Sequence Description Alias PCC hrr Kfl00418_0110 no hits & (original description: no original description) kfl00418_0110_v1.1 0.9162638264212294 3 Kfl00020_0160 (at1g56290 : 308.0) CwfJ-like family protein; CONTAINS InterPro DOMAIN/s: Cwf19-like, C-terminal domain-1 (InterPro:IPR006768), Cwf19-like protein, C-terminal domain-2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein / zinc finger (CCCH-type) family protein (TAIR:AT5G56900.2); Has 2474 Blast hits to 2009 proteins in 284 species: Archae - 2; Bacteria - 39; Metazoa - 1047; Fungi - 300; Plants - 173; Viruses - 2; Other Eukaryotes - 911 (source: NCBI BLink). & (reliability: 616.0) & (original description: no original description) kfl00020_0160_v1.1 0.9085463945923693 5 Kfl00692_0060 no hits & (original description: no original description) kfl00692_0060_v1.1 0.8998592454694322 8 Kfl00250_0040 (at4g15570 : 192.0) Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.; MAGATAMA 3 (MAA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction, pollen tube guidance, embryo sac development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G16800.1); Has 6636 Blast hits to 6003 proteins in 1303 species: Archae - 237; Bacteria - 1922; Metazoa - 1300; Fungi - 1113; Plants - 639; Viruses - 442; Other Eukaryotes - 983 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description) kfl00250_0040_v1.1 0.893075763406622 15 Kfl00284_0020 (at3g21480 : 127.0) BRCT domain-containing DNA repair protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT4G03130.1); Has 730 Blast hits to 680 proteins in 204 species: Archae - 4; Bacteria - 146; Metazoa - 309; Fungi - 49; Plants - 100; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description) kfl00284_0020_v1.1 0.8855868731969864 20 Kfl00418_0120 no hits & (original description: no original description) kfl00418_0120_v1.1 0.8849162194052796 6 Kfl00061_0120 (at1g65660 : 655.0) Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells.; SWELLMAP 1 (SMP1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT4G37120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1310.0) & (original description: no original description) kfl00061_0120_v1.1 0.8847431830120956 7 Kfl00067_0030 (at5g42400 : 213.0) Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.; SET domain protein 25 (SDG25); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 5838 Blast hits to 5683 proteins in 501 species: Archae - 3; Bacteria - 461; Metazoa - 2434; Fungi - 507; Plants - 1016; Viruses - 2; Other Eukaryotes - 1415 (source: NCBI BLink). & (q8s4p6|ez1_maize : 89.7) Polycomb protein EZ1 (Enhancer of zeste protein 1) - Zea mays (Maize) & (reliability: 426.0) & (original description: no original description) kfl00067_0030_v1.1 0.883431948564612 21 Kfl00370_0120 no hits & (original description: no original description) kfl00370_0120_v1.1 0.8821632016593082 9 Kfl00245_0060 no hits & (original description: no original description) kfl00245_0060_v1.1 0.8807452653512209 10 Kfl00012_0230 no hits & (original description: no original description) kfl00012_0230_v1.1 0.8798663057688717 18 Kfl00018_0560 no hits & (original description: no original description) kfl00018_0560_v1.1 0.879485560833929 14 Kfl00557_0070 (at3g12640 : 82.0) RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Splicing factor PWI (InterPro:IPR002483); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G24350.1); Has 3110 Blast hits to 3077 proteins in 726 species: Archae - 48; Bacteria - 800; Metazoa - 1243; Fungi - 266; Plants - 328; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink). & (reliability: 164.0) & (original description: no original description) kfl00557_0070_v1.1 0.8779519127173911 13 Kfl00034_0250 no hits & (original description: no original description) kfl00034_0250_v1.1 0.8773280129643045 14 Kfl00285_0010 (at5g23150 : 115.0) Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances AG function.; ENHANCER OF AG-4 2 (HUA2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT5G08230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description) kfl00285_0010_v1.1 0.876167671483488 18 Kfl00050_0270 (at1g03910 : 575.0) EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2). & (reliability: 1150.0) & (original description: no original description) kfl00050_0270_v1.1 0.8730711109826494 16 Kfl00432_0070 (at1g16800 : 598.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1); Has 9771 Blast hits to 8579 proteins in 1344 species: Archae - 197; Bacteria - 2032; Metazoa - 2727; Fungi - 1277; Plants - 815; Viruses - 364; Other Eukaryotes - 2359 (source: NCBI BLink). & (reliability: 1196.0) & (original description: no original description) kfl00432_0070_v1.1 0.8724422172410815 17 Kfl00744_0030 no hits & (original description: no original description) kfl00744_0030_v1.1 0.8694290259161761 18 Kfl00705_0025 no hits & (original description: no original description) kfl00705_0025_v1.1 0.866539663406143 27 Kfl00069_0090 (at2g38780 : 168.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description) kfl00069_0090_v1.1 0.866133991145749 20 Kfl00016_0200 no hits & (original description: no original description) kfl00016_0200_v1.1 0.865576749974463 21 Kfl00024_0420 no hits & (original description: no original description) kfl00024_0420_v1.1 0.8603260922907945 22 Kfl00233_0070 (at4g25610 : 99.4) C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); Has 400 Blast hits to 392 proteins in 117 species: Archae - 0; Bacteria - 39; Metazoa - 136; Fungi - 49; Plants - 38; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description) kfl00233_0070_v1.1 0.8601754192208589 23 Kfl00157_0140 (at1g24706 : 704.0) Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.; THO2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THO complex, subunitTHOC2, C-region (InterPro:IPR021418), THO complex, subunitTHOC2, N-region (InterPro:IPR021726). & (reliability: 1408.0) & (original description: no original description) kfl00157_0140_v1.1 0.8598033819940887 43 Kfl00304_0050 (at3g63400 : 226.0) Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1). & (q39613|cyph_catro : 217.0) Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 452.0) & (original description: no original description) kfl00304_0050_v1.1 0.8582899187850698 25 Kfl00032_0200 (at5g25070 : 84.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 168.0) & (original description: no original description) kfl00032_0200_v1.1 0.855374267027382 26 Kfl00081_0140 (at3g15120 : 365.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48-related / CDC48-related (TAIR:AT1G05910.1); Has 80986 Blast hits to 58843 proteins in 3591 species: Archae - 1718; Bacteria - 20912; Metazoa - 22400; Fungi - 8848; Plants - 5536; Viruses - 480; Other Eukaryotes - 21092 (source: NCBI BLink). & (q96372|cdc48_capan : 155.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 730.0) & (original description: no original description) kfl00081_0140_v1.1 0.8548290518232401 27 Kfl00113_0070 no hits & (original description: no original description) kfl00113_0070_v1.1 0.8548072561115969 28 Kfl00478_0020 no hits & (original description: no original description) kfl00478_0020_v1.1 0.8547543713957754 29 Kfl00251_0120 (at1g04300 : 475.0) TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2). & (reliability: 950.0) & (original description: no original description) kfl00251_0120_v1.1 0.8497215222388433 47 Kfl00096_0110 (q7eyv7|parp1_orysa : 838.0) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1) (ADPRT 1) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) - Oryza sativa (Rice) & (at2g31320 : 836.0) Abiotic Stress-inducible gene.; poly(ADP-ribose) polymerase 2 (PARP2); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity, NAD or NADH binding, DNA binding, zinc ion binding; INVOLVED IN: DNA repair, response to oxidative stress, response to abscisic acid stimulus, protein amino acid ADP-ribosylation, response to abiotic stimulus; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PADR1 (InterPro:IPR012982), Zinc finger, PARP-type (InterPro:IPR001510), WGR (InterPro:IPR008893), Poly(ADP-ribose) polymerase, regulatory domain (InterPro:IPR004102), NAD+ ADP-ribosyltransferase (InterPro:IPR008288), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (TAIR:AT5G22470.1); Has 1243 Blast hits to 1018 proteins in 163 species: Archae - 0; Bacteria - 14; Metazoa - 746; Fungi - 100; Plants - 173; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink). & (reliability: 1672.0) & (original description: no original description) kfl00096_0110_v1.1 0.8490692594537166 31 Kfl00217_0010 no hits & (original description: no original description) kfl00217_0010_v1.1 0.8488551991066082 32 Kfl00121_0010 (at3g16840 : 451.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 60083 Blast hits to 51461 proteins in 3186 species: Archae - 589; Bacteria - 20345; Metazoa - 13239; Fungi - 7387; Plants - 3446; Viruses - 273; Other Eukaryotes - 14804 (source: NCBI BLink). & (q41382|rh7_spiol : 141.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (reliability: 902.0) & (original description: no original description) kfl00121_0010_v1.1 0.8475796379840157 33 Kfl00085_0010 no hits & (original description: no original description) kfl00085_0010_v1.1 0.8465153838585423 64 Kfl00012_0510 (at5g24630 : 135.0) This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.; brassinosteroid-insensitive4 (BIN4); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: cotyledon vascular system, cotyledon, root tip, leaf trichome, leaf; Has 3628 Blast hits to 2405 proteins in 320 species: Archae - 6; Bacteria - 1196; Metazoa - 1107; Fungi - 390; Plants - 165; Viruses - 17; Other Eukaryotes - 747 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description) kfl00012_0510_v1.1 0.8459646122915916 35 Kfl00166_0220 (at3g45630 : 268.0) RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1); Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0; Bacteria - 612; Metazoa - 421; Fungi - 369; Plants - 161; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink). & (reliability: 536.0) & (original description: no original description) kfl00166_0220_v1.1, kfl00166_0220_v1.1 0.8451642569229815 36 Kfl00351_0050 no hits & (original description: no original description) kfl00351_0050_v1.1 0.8414125492123516 37 Kfl00154_0100 (at1g04860 : 134.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 2 (UBP2); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 1 (TAIR:AT2G32780.1); Has 10400 Blast hits to 6714 proteins in 274 species: Archae - 0; Bacteria - 50; Metazoa - 5279; Fungi - 1927; Plants - 1459; Viruses - 5; Other Eukaryotes - 1680 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description) kfl00154_0100_v1.1 0.8411649015344476 45 Kfl00072_0320 (at1g52500 : 254.0) Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Encodes a formamidopyrimidine-DNA glycosylase that has abasic lyase activity and is able to nick double- stranded oligonucleotides containing 8-oxo-7,8-dihydroguanine (8-oxoG) in vitro.; MUTM homolog-1 (MMH-1); CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), DNA glycosylase/AP lyase, H2TH DNA-binding (InterPro:IPR015886), DNA glycosylase/AP lyase, catalytic domain (InterPro:IPR012319), DNA glycosylase/AP lyase (InterPro:IPR000191); Has 11102 Blast hits to 10156 proteins in 2240 species: Archae - 10; Bacteria - 5065; Metazoa - 1812; Fungi - 570; Plants - 321; Viruses - 42; Other Eukaryotes - 3282 (source: NCBI BLink). & (reliability: 508.0) & (original description: no original description) kfl00072_0320_v1.1 0.8410848919472692 39 Kfl00398_0120 (at3g52210 : 179.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mRNA capping; LOCATED IN: cellular_component unknown; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G20650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6k833|mces2_orysa : 164.0) mRNA cap guanine-N7 methyltransferase 2 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 2) (mRNA cap methyltransferase 2) - Oryza sativa (Rice) & (reliability: 358.0) & (original description: no original description) kfl00398_0120_v1.1 0.8371735350629077 46 Kfl00027_0100 (at5g41790 : 86.3) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 172.6) & (original description: no original description) kfl00027_0100_v1.1, kfl00027_0100_v1.1 0.8348423551648432 41 Kfl00433_0080 (at1g33390 : 423.0) Over-expression of this gene results in stem fasciation. The predicted amino acid sequence reveals the presence of two domains (DEXH-box or DEAD-box helicase and DUF1065 domain) and fragments of two more domains (HrpA domain and HA2 domain).; FASCIATED STEM 4 (FAS4); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 16056 Blast hits to 9082 proteins in 1556 species: Archae - 2; Bacteria - 6415; Metazoa - 3625; Fungi - 2171; Plants - 1181; Viruses - 334; Other Eukaryotes - 2328 (source: NCBI BLink). & (reliability: 846.0) & (original description: no original description) kfl00433_0080_v1.1 0.8314469621293364 49 Kfl00060_0310 (p37707|b2_dauca : 119.0) B2 protein - Daucus carota (Carrot) & (at5g42050 : 109.0) DCD (Development and Cell Death) domain protein; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G27090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 218.0) & (original description: no original description) kfl00060_0310_v1.1 0.8296761375550504 43 Kfl00310_0060 no hits & (original description: no original description) kfl00310_0060_v1.1 0.8295393393013875 56 Kfl00135_0180 (at1g11060 : 93.6) WAPL (Wings apart-like protein regulation of heterochromatin) protein; BEST Arabidopsis thaliana protein match is: WAPL (Wings apart-like protein regulation of heterochromatin) protein (TAIR:AT1G61030.1); Has 319 Blast hits to 253 proteins in 105 species: Archae - 2; Bacteria - 73; Metazoa - 168; Fungi - 7; Plants - 48; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description) kfl00135_0180_v1.1 0.8258337804835084 45 Kfl00032_0470 (at2g32240 : 102.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) kfl00032_0470_v1.1 0.8244639243417712 46 Kfl00217_0030 no hits & (original description: no original description) kfl00217_0030_v1.1 0.8233368578385296 47 Kfl00086_0160 (at1g60900 : 89.7) U2 snRNP auxilliary factor, large subunit, splicing factor; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT4G36690.4); Has 95343 Blast hits to 42389 proteins in 1915 species: Archae - 82; Bacteria - 12197; Metazoa - 47091; Fungi - 9469; Plants - 8106; Viruses - 663; Other Eukaryotes - 17735 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description) kfl00086_0160_v1.1 0.8232709465090671 48 Kfl00006_0210 no hits & (original description: no original description) kfl00006_0210_v1.1 0.8212732300527815 49 Kfl00010_0280 (at3g06010 : 961.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 486.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1922.0) & (original description: no original description) kfl00010_0280_v1.1 0.8200278553334622 50 Kfl00402_0100 (at1g27320 : 112.0) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.; histidine kinase 3 (HK3); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 124308 Blast hits to 110912 proteins in 3043 species: Archae - 772; Bacteria - 110408; Metazoa - 31; Fungi - 2185; Plants - 2022; Viruses - 28; Other Eukaryotes - 8862 (source: NCBI BLink). & (o49230|etr1_braol : 92.0) Ethylene receptor (EC 2.7.13.3) - Brassica oleracea (Wild cabbage) & (reliability: 224.0) & (original description: no original description) kfl00402_0100_v1.1 0.8197761983036249 51 Kfl00037_0230 (at2g33730 : 806.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink). & (p46942|db10_nicsy : 283.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 1612.0) & (original description: no original description) kfl00037_0230_v1.1 0.8194238859464504 59 Kfl00758_0010 (at5g41020 : 172.0) myb family transcription factor; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description) kfl00758_0010_v1.1 0.818896791464991 53 Kfl00832_0030 (at5g17900 : 199.0) microfibrillar-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Micro-fibrillar-associated 1, C-terminal (InterPro:IPR009730); BEST Arabidopsis thaliana protein match is: microfibrillar-associated protein-related (TAIR:AT4G08580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description) kfl00832_0030_v1.1 0.8160919899250654 54 Kfl00332_0060 (at3g49400 : 130.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781). & (reliability: 260.0) & (original description: no original description) kfl00332_0060_v1.1 0.8139976866077047 61 Kfl00855_0020 no hits & (original description: no original description) kfl00855_0020_v1.1 0.8132434673813619 56 Kfl00084_0070 (at2g35800 : 570.0) mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate carrier (InterPro:IPR001993), EF-hand-like domain (InterPro:IPR011992), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G26360.1); Has 17569 Blast hits to 12630 proteins in 423 species: Archae - 0; Bacteria - 12; Metazoa - 7266; Fungi - 5152; Plants - 3396; Viruses - 0; Other Eukaryotes - 1743 (source: NCBI BLink). & (p29518|bt1_maize : 90.5) Protein brittle-1, chloroplast precursor - Zea mays (Maize) & (reliability: 1140.0) & (original description: no original description) kfl00084_0070_v1.1 0.8089551763159856 57 Kfl00260_0150 (at3g55070 : 442.0) LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein (TAIR:AT4G37880.1); Has 813 Blast hits to 810 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 254; Plants - 147; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 884.0) & (original description: no original description) kfl00260_0150_v1.1 0.8076149371446057 60 Kfl00941_0010 no hits & (original description: no original description) kfl00941_0010_v1.1 0.8071266998421434 61 Kfl00035_0130 no hits & (original description: no original description) kfl00035_0130_v1.1 0.8050100803211396 62 Kfl00151_0290 (at3g56720 : 84.3) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. & (reliability: 168.6) & (original description: no original description) kfl00151_0290_v1.1 0.8046692870127837 63 Kfl00026_0110 no hits & (original description: no original description) kfl00026_0110_v1.1 0.8037341356098109 64 Kfl00160_0210 (at5g19300 : 265.0) CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description) kfl00160_0210_v1.1 0.8033262986416798 66 Kfl00201_0030 (at3g01610 : 296.0) AAA-type ATPase - Over 90% homologous to CDC48a; cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink). & (q96372|cdc48_capan : 287.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 572.0) & (original description: no original description) kfl00201_0030_v1.1, kfl00201_0030_v1.1, kfl00201_0030_v1.1 0.8017833097353066 67 Kfl00026_0200 no hits & (original description: no original description) kfl00026_0200_v1.1 0.7995891228336269 68 Kfl00211_0090 (at5g53800 : 184.0) unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description) kfl00211_0090_v1.1 0.7969797067257773 70 Kfl00395_0140 no hits & (original description: no original description) kfl00395_0140_v1.1 0.796809520751002 71 Kfl00014_0350 no hits & (original description: no original description) kfl00014_0350_v1.1 0.795246475702775 73 Kfl00374_0105 no hits & (original description: no original description) kfl00374_0105_v1.1 0.7926753675201352 75 Kfl00621_0040 (at1g25540 : 97.8) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense.; PHYTOCHROME AND FLOWERING TIME 1 (PFT1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: in 8 processes; LOCATED IN: mediator complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25, von Willebrand factor type A (InterPro:IPR021419); Has 143907 Blast hits to 47238 proteins in 2114 species: Archae - 36; Bacteria - 15136; Metazoa - 49480; Fungi - 14034; Plants - 10447; Viruses - 822; Other Eukaryotes - 53952 (source: NCBI BLink). & (reliability: 195.6) & (original description: no original description) kfl00621_0040_v1.1 0.7889175594295222 77 Kfl00082_0160 no hits & (original description: no original description) kfl00082_0160_v1.1 0.7886878669924938 78 Kfl00038_0010 (at3g59990 : 605.0) Encodes a MAP2 like methionine aminopeptidase; methionine aminopeptidase 2B (MAP2B); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: protein processing; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24A, methionine aminopeptidase, subfamily 2 (InterPro:IPR002468), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site (InterPro:IPR018349), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 2A (TAIR:AT2G44180.1). & (reliability: 1210.0) & (original description: no original description) kfl00038_0010_v1.1 0.788041330471087 80 Kfl00304_0030 no hits & (original description: no original description) kfl00304_0030_v1.1 0.7846235417873547 84 Kfl00233_0200 (at3g52610 : 170.0) unknown protein; Has 68 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 340.0) & (original description: no original description) kfl00233_0200_v1.1 0.7844473458777754 85 Kfl00489_0020 (at1g13690 : 145.0) AtE1 - stimulates the ATPase activity of DnaK/DnaJ; ATPase E1 (ATE1); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 14554 Blast hits to 12500 proteins in 724 species: Archae - 8; Bacteria - 1323; Metazoa - 7103; Fungi - 1824; Plants - 2936; Viruses - 0; Other Eukaryotes - 1360 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description) kfl00489_0020_v1.1 0.7834444440064489 86 Kfl00022_0230 no hits & (original description: no original description) kfl00022_0230_v1.1 0.7819388437131806 87 Kfl00147_0210 (at5g58130 : 87.4) Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation.; REPRESSOR OF SILENCING 3 (ROS3); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 14321 Blast hits to 7664 proteins in 903 species: Archae - 313; Bacteria - 6242; Metazoa - 2615; Fungi - 1429; Plants - 503; Viruses - 131; Other Eukaryotes - 3088 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description) kfl00147_0210_v1.1 0.7782912366346179 90 Kfl00157_0130 no hits & (original description: no original description) kfl00157_0130_v1.1 0.7758201707411652 94 Kfl00673_0070 (at1g55300 : 175.0) TBP-associated factor 7 (TAF7); FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TAFII55 protein, conserved region (InterPro:IPR006751); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 350.0) & (original description: no original description) kfl00673_0070_v1.1 0.7741076842329678 95 Kfl01005_0010 (at2g48120 : 97.8) The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.; PALE CRESS (PAC); Has 299 Blast hits to 297 proteins in 71 species: Archae - 0; Bacteria - 13; Metazoa - 176; Fungi - 25; Plants - 43; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). & (reliability: 195.6) & (original description: no original description) kfl01005_0010_v1.1 0.7738682960798579 96 Kfl00684_0090 (at4g02400 : 189.0) U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink). & (reliability: 378.0) & (original description: no original description) kfl00684_0090_v1.1 0.7736673382753922 98