Sequence Description Alias PCC hrr evm.model.contig_468.8 (at1g79690 : 110.0) nudix hydrolase homolog 3 (NUDT3); FUNCTIONS IN: dipeptidyl-peptidase activity, hydrolase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), Peptidase M49, dipeptidyl-peptidase III (InterPro:IPR005317), NUDIX hydrolase domain (InterPro:IPR000086); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description) 0.9704003148911522 1 evm.model.contig_3423.25 no hits & (original description: no original description) 0.9671696371337598 19 evm.model.contig_2104.11 no hits & (original description: no original description) 0.9663075213699487 4 evm.model.contig_533.5 (at1g80950 : 119.0) Phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: calcineurin B subunit-related (TAIR:AT2G45670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description) 0.9643041700687562 11 evm.model.contig_2468.3 (original description: no original description) 0.9640389853853903 6 evm.model.contig_2070.11 no hits & (original description: no original description) 0.9583649191884512 12 evm.model.contig_554.8 (at2g44740 : 128.0) cyclin p4;1 (CYCP4;1); CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN P4;2 (TAIR:AT5G61650.1); Has 1474 Blast hits to 1416 proteins in 218 species: Archae - 0; Bacteria - 18; Metazoa - 247; Fungi - 710; Plants - 236; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description) 0.9577957629182441 12 evm.model.contig_2019.3 no hits & (original description: no original description) 0.9568430019037524 42 evm.model.contig_2275.2 no hits & (original description: no original description) 0.9563361482045356 9 evm.model.contig_2293.12 (at2g47760 : 244.0) asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 488.0) & (original description: no original description) 0.9561538393137933 10 evm.model.contig_2157.15 no hits & (original description: no original description) 0.9541001019265881 55 evm.model.contig_3404.5 no hits & (original description: no original description) 0.9536305699117474 52 evm.model.contig_559.2 no hits & (original description: no original description) 0.9526455870179529 54 evm.model.contig_517.5 no hits & (original description: no original description) 0.9523009478493323 24 evm.model.contig_604.7 (at1g02740 : 86.7) MRG family protein; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), Tudor-like, plant (InterPro:IPR014002), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT4G37280.1); Has 1083 Blast hits to 947 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 790; Fungi - 163; Plants - 70; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). & (reliability: 173.4) & (original description: no original description) 0.9516258693600906 15 evm.model.contig_2059.27 (at2g29080 : 620.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 3 (ftsh3); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 10 (TAIR:AT1G07510.1); Has 42068 Blast hits to 39734 proteins in 3332 species: Archae - 1581; Bacteria - 17420; Metazoa - 4814; Fungi - 3774; Plants - 3280; Viruses - 30; Other Eukaryotes - 11169 (source: NCBI BLink). & (q5z974|ftsh_orysa : 422.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1216.0) & (original description: no original description) 0.9504695950841355 28 evm.model.contig_3416.18 no hits & (original description: no original description) 0.9492760017066266 75 evm.model.contig_2051.7 (at2g45620 : 187.0) Nucleotidyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT3G45750.1); Has 1962 Blast hits to 1846 proteins in 232 species: Archae - 0; Bacteria - 9; Metazoa - 921; Fungi - 372; Plants - 185; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description) 0.9488022967311308 50 evm.model.contig_2030.3 no hits & (original description: no original description) 0.94762029094141 37 evm.model.contig_3456.1 no hits & (original description: no original description) 0.9464774124127863 73 evm.model.contig_2126.1 (at1g69523 : 150.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G69526.2); Has 8414 Blast hits to 8405 proteins in 1811 species: Archae - 286; Bacteria - 5877; Metazoa - 213; Fungi - 292; Plants - 233; Viruses - 0; Other Eukaryotes - 1513 (source: NCBI BLink). & (reliability: 300.0) & (original description: no original description) 0.9464188064835171 36 evm.model.contig_2289.1 (at4g26480 : 129.0) RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G56140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description) 0.9461429347744594 68 evm.model.contig_2057.2 (q94hl5|t2ag_orysa : 89.4) Transcription initiation factor IIA gamma chain (TFIIA-gamma) - Oryza sativa (Rice) & (at4g24440 : 85.5) transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 553 Blast hits to 553 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 162; Plants - 188; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description) 0.9457287134640533 88 evm.model.contig_3451.6 (at4g16440 : 202.0) Encodes a [FeFe]-hydrogenase-like protein named Gollum (for Growth in different Oxygen LeveLs inflUences Morphogenesis). Heterologous expression of Gollum in E. coli indicates that it probably contains two [Fe-S] clusters with different magnetic properties. Sequence alignment analysis indicates that these two clusters would be topologically equivalent to the mesial and proximal [Fe-S] centers of [FeFe]-hydrogenases. Knockdown mutants (RNAi) show a dwarf phenotype at the normal atmospheric partial oxygen pressure of 21 kPa. This dwarf phenotype could be rescued by growing the plant under low oxygen pressure (5kPa), suggesting a role for this gene in oxygen sensing.; ferredoxin hydrogenases; CONTAINS InterPro DOMAIN/s: Iron hydrogenase, large subunit, C-terminal (InterPro:IPR004108), Iron hydrogenase (InterPro:IPR009016), Iron hydrogenase, small subunit-like (InterPro:IPR003149); Has 2574 Blast hits to 2544 proteins in 612 species: Archae - 1; Bacteria - 1826; Metazoa - 221; Fungi - 188; Plants - 72; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink). & (reliability: 404.0) & (original description: no original description) 0.9454891989374274 88 evm.model.contig_650.5 no hits & (original description: no original description) 0.9448842886109433 71 evm.model.contig_465.6 no hits & (original description: no original description) 0.9443550045125677 99 evm.model.contig_865.2 (at4g24730 : 105.0) Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transporter, high affinity nitrate, Nar2 (InterPro:IPR016605); BEST Arabidopsis thaliana protein match is: nitrate transmembrane transporters (TAIR:AT5G50200.1). & (reliability: 210.0) & (original description: no original description) 0.9443479571102046 36 evm.model.contig_3412.4 no hits & (original description: no original description) 0.9435664026094898 86 evm.model.contig_2044.12 (at1g08840 : 403.0) embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD/REP type (InterPro:IPR000212), DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1). & (reliability: 806.0) & (original description: no original description) 0.9432685804524218 29 evm.model.contig_3532.7 no hits & (original description: no original description) 0.9431023801117009 36 evm.model.contig_498.15 (at5g24030 : 130.0) Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.; SLAC1 homologue 3 (SLAH3); FUNCTIONS IN: transporter activity; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 2 (TAIR:AT4G27970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 260.0) & (original description: no original description) 0.9429179841512352 31 evm.model.contig_431.5 (at5g64610 : 180.0) Encodes an enzyme with histone acetyltransferase activity. HAM1 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM1. HAM1 acetylates histone H4 lysine 5.; histone acetyltransferase of the MYST family 1 (HAM1); FUNCTIONS IN: histone acetyltransferase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Chromo domain (InterPro:IPR000953), MOZ/SAS-like protein (InterPro:IPR002717); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the MYST family 2 (TAIR:AT5G09740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q8li34|myst1_orysa : 180.0) Putative MYST-like histone acetyltransferase 1 (EC 2.3.1.48) - Oryza sativa (Rice) & (reliability: 360.0) & (original description: no original description) 0.9427110639289144 32 evm.model.contig_4402.1 no hits & (original description: no original description) 0.9427061155380436 65 evm.model.contig_2157.20 no hits & (original description: no original description) 0.9419908666713905 35 evm.model.contig_3800.3 no hits & (original description: no original description) 0.9418084855900448 56 evm.model.contig_3601.12 no hits & (original description: no original description) 0.9418039541997685 56 evm.model.contig_3521.6 (at5g44750 : 233.0) Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).; REV1; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair, response to UV-B, response to DNA damage stimulus; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963), DNA repair protein, Rev1 (InterPro:IPR012112), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA/RNA polymerases superfamily protein (TAIR:AT1G49980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 466.0) & (original description: no original description) 0.9413172912117146 89 evm.model.contig_4408.22 (at3g01090 : 211.0) encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase; SNF1 kinase homolog 10 (KIN10); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p28582|cdpk_dauca : 194.0) Calcium-dependent protein kinase (EC 2.7.11.1) (CDPK) - Daucus carota (Carrot) & (reliability: 416.0) & (original description: no original description) 0.9403010289987731 53 evm.model.contig_2027.5 (at2g34570 : 82.8) maternal effect embryo arrest 21 (MEE21); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984); Has 718 Blast hits to 716 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 251; Plants - 108; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink). & (reliability: 165.6) & (original description: no original description) 0.939996118248417 62 evm.model.contig_2171.3 (at1g03140 : 120.0) splicing factor Prp18 family protein; INVOLVED IN: RNA splicing; LOCATED IN: spliceosomal complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), Splicing factor motif (InterPro:IPR003648), Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54590.1); Has 624 Blast hits to 613 proteins in 206 species: Archae - 0; Bacteria - 5; Metazoa - 235; Fungi - 175; Plants - 58; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.938911241487371 59 evm.model.contig_568.1 no hits & (original description: no original description) 0.9387789194483478 97 evm.model.contig_600.4 no hits & (original description: no original description) 0.938360733285324 43 evm.model.contig_496.17 no hits & (original description: no original description) 0.9381737524195078 44 evm.model.contig_2157.16 no hits & (original description: no original description) 0.937451910185585 75 evm.model.contig_479.15 no hits & (original description: no original description) 0.936555210227211 46 evm.model.contig_683.4 (at5g18640 : 97.4) alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G18630.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 194.8) & (original description: no original description) 0.9363712992400179 47 evm.model.contig_3515.4 no hits & (original description: no original description) 0.9354779377319735 89 evm.model.contig_4456.18 no hits & (original description: no original description) 0.9350209660659659 49 evm.model.contig_500.2 (original description: no original description) 0.934883980679443 97 evm.model.contig_435.4 no hits & (original description: no original description) 0.9339185214412764 59 evm.model.contig_3409.5 no hits & (original description: no original description) 0.9337797208880468 59 evm.model.contig_3416.10 (at5g19910 : 115.0) MED31; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med31 (InterPro:IPR008831). & (reliability: 230.0) & (original description: no original description) 0.9326904233755854 72 evm.model.contig_604.6 (q9g4f5|cysa_cucsa : 114.0) Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) (Sulfate-transporting ATPase) - Cucumis sativus (Cucumber) & (at1g65410 : 108.0) Encodes a member of NAP subfamily of transporters. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; non-intrinsic ABC protein 11 (NAP11); FUNCTIONS IN: transporter activity, ATPase activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: non-intrinsic ABC protein 3 (TAIR:AT1G67940.1); Has 424474 Blast hits to 380294 proteins in 4085 species: Archae - 7338; Bacteria - 330543; Metazoa - 9238; Fungi - 6335; Plants - 5254; Viruses - 18; Other Eukaryotes - 65748 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) 0.932402885454376 89 evm.model.contig_3396.7 (at2g34660 : 863.0) encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.; multidrug resistance-associated protein 2 (MRP2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 1 (TAIR:AT1G30400.2). & (q6yuu5|mdr_orysa : 246.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 1726.0) & (original description: no original description) 0.9319053418549978 71 evm.model.contig_2025.41 (original description: no original description) 0.9314124045926279 61 evm.model.contig_4448.17 (at3g19950 : 129.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description) 0.9312520036554606 68 evm.model.contig_2020.26 no hits & (original description: no original description) 0.9312031185854369 63 evm.model.contig_2181.8 no hits & (original description: no original description) 0.9308762917079233 64 evm.model.contig_508.7 no hits & (original description: no original description) 0.9308582715545387 65 evm.model.contig_2262.7 (at4g27080 : 144.0) putative protein; PDI-like 5-4 (PDIL5-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: PDI-like 5-3 (TAIR:AT3G20560.1); Has 8490 Blast hits to 6181 proteins in 1071 species: Archae - 57; Bacteria - 1584; Metazoa - 3355; Fungi - 1092; Plants - 1073; Viruses - 5; Other Eukaryotes - 1324 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description) 0.9304309595419198 93 evm.model.contig_662.3 (at1g12370 : 315.0) encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele; photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 2452 Blast hits to 2448 proteins in 660 species: Archae - 33; Bacteria - 979; Metazoa - 129; Fungi - 60; Plants - 123; Viruses - 39; Other Eukaryotes - 1089 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description) 0.9304239163195599 68 evm.model.contig_4410.11 (at3g11920 : 132.0) glutaredoxin-related; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: intracellular signaling pathway, cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), DEP domain (InterPro:IPR000591), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: electron carriers;protein disulfide oxidoreductases (TAIR:AT4G08550.1); Has 2850 Blast hits to 2806 proteins in 762 species: Archae - 4; Bacteria - 1389; Metazoa - 366; Fungi - 36; Plants - 426; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description) 0.9304238518714114 69 evm.model.contig_538.7 (original description: no original description) 0.9299554429528349 77 evm.model.contig_666.4 (at3g27925 : 235.0) Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.; DegP protease 1 (DEGP1); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis, protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Trypsin family protein with PDZ domain (TAIR:AT5G39830.1); Has 16838 Blast hits to 16778 proteins in 2643 species: Archae - 108; Bacteria - 11023; Metazoa - 354; Fungi - 149; Plants - 421; Viruses - 7; Other Eukaryotes - 4776 (source: NCBI BLink). & (reliability: 470.0) & (original description: no original description) 0.9290378318670525 86 evm.model.contig_2343.11 (at4g04180 : 239.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (p54774|cdc48_soybn : 121.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 478.0) & (original description: no original description) 0.9286302327505981 75 evm.model.contig_2029.4 no hits & (original description: no original description) 0.9283872465157417 79 evm.model.contig_2157.8 no hits & (original description: no original description) 0.9268835694822648 83 evm.model.contig_4404.5 no hits & (original description: no original description) 0.9262189540112645 85 evm.model.contig_441.1 (at4g36280 : 201.0) Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: compromised recognition of TCV 1 (TAIR:AT4G36290.1); Has 498 Blast hits to 482 proteins in 78 species: Archae - 0; Bacteria - 36; Metazoa - 219; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). & (gnl|cdd|68872 : 194.0) no description available & (gnl|cdd|39774 : 85.2) no description available & (reliability: 390.0) & (original description: no original description) 0.9260675381269222 86 evm.model.contig_4402.15 no hits & (original description: no original description) 0.9259207239340275 95 evm.model.contig_4419.1 (at4g24630 : 99.4) DHHC-type zinc finger family protein; FUNCTIONS IN: receptor activity, zinc ion binding; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Plexin-like fold (InterPro:IPR016201); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G50020.2); Has 5142 Blast hits to 5136 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 2201; Fungi - 738; Plants - 841; Viruses - 0; Other Eukaryotes - 1362 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description) 0.925763302981053 88 evm.model.contig_3405.1 no hits & (original description: no original description) 0.9246944075743389 93 evm.model.contig_652.1 no hits & (original description: no original description) 0.9231975097317324 99