Sequence Description Alias PCC hrr evm.model.contig_662.3 (at1g12370 : 315.0) encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele; photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 2452 Blast hits to 2448 proteins in 660 species: Archae - 33; Bacteria - 979; Metazoa - 129; Fungi - 60; Plants - 123; Viruses - 39; Other Eukaryotes - 1089 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description) 0.9533878597185664 1 evm.model.contig_3416.2 no hits & (original description: no original description) 0.9361019432700863 31 evm.model.contig_3416.3 (at5g20410 : 257.0) Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation.; monogalactosyldiacylglycerol synthase 2 (MGD2); CONTAINS InterPro DOMAIN/s: Monogalactosyldiacylglycerol synthase (InterPro:IPR009695), Glycosyl transferase, family 28, C-terminal (InterPro:IPR007235); BEST Arabidopsis thaliana protein match is: monogalactosyldiacylglycerol synthase type C (TAIR:AT2G11810.1); Has 1572 Blast hits to 1572 proteins in 585 species: Archae - 0; Bacteria - 1385; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). & (reliability: 514.0) & (original description: no original description) 0.9324232773510717 12 evm.model.contig_2051.10 (at4g05530 : 164.0) Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA.; indole-3-butyric acid response 1 (IBR1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: root hair elongation, indolebutyric acid metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q75kh3|grdh_orysa : 89.0) Glucose and ribitol dehydrogenase homolog (EC 1.1.1.-) - Oryza sativa (Rice) & (reliability: 328.0) & (original description: no original description) 0.925920626860339 4 evm.model.contig_3560.7 no hits & (original description: no original description) 0.9257575499005194 6 evm.model.contig_3487.6 (at2g04845 : 128.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 393 Blast hits to 383 proteins in 188 species: Archae - 0; Bacteria - 98; Metazoa - 122; Fungi - 80; Plants - 36; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description) 0.9248671311906442 59 evm.model.contig_2172.5 (at5g21326 : 103.0) Ca2+regulated serine-threonine protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 3 (TAIR:AT2G26980.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 97.4) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 198.0) & (original description: no original description) 0.923633084948793 34 evm.model.contig_3544.1 "(at4g15110 : 514.0) member of CYP97B; ""cytochrome P450, family 97, subfamily B, polypeptide 3"" (CYP97B3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 97, subfamily A, polypeptide 3 (TAIR:AT1G31800.1); Has 31568 Blast hits to 31460 proteins in 1570 species: Archae - 46; Bacteria - 3266; Metazoa - 11509; Fungi - 6986; Plants - 8573; Viruses - 6; Other Eukaryotes - 1182 (source: NCBI BLink). & (o48921|c97b2_soybn : 513.0) Cytochrome P450 97B2 (EC 1.14.-.-) - Glycine max (Soybean) & (reliability: 1028.0) & (original description: no original description)" 0.9226968024607574 8 evm.model.contig_498.15 (at5g24030 : 130.0) Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.; SLAC1 homologue 3 (SLAH3); FUNCTIONS IN: transporter activity; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 2 (TAIR:AT4G27970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 260.0) & (original description: no original description) 0.9216492372784761 63 evm.model.contig_3397.3 no hits & (original description: no original description) 0.9213475626686861 16 evm.model.contig_2115.2 (q9g4f5|cysa_cucsa : 130.0) Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) (Sulfate-transporting ATPase) - Cucumis sativus (Cucumber) & (at1g65410 : 122.0) Encodes a member of NAP subfamily of transporters. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; non-intrinsic ABC protein 11 (NAP11); FUNCTIONS IN: transporter activity, ATPase activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: non-intrinsic ABC protein 3 (TAIR:AT1G67940.1); Has 424474 Blast hits to 380294 proteins in 4085 species: Archae - 7338; Bacteria - 330543; Metazoa - 9238; Fungi - 6335; Plants - 5254; Viruses - 18; Other Eukaryotes - 65748 (source: NCBI BLink). & (reliability: 244.0) & (original description: no original description) 0.9203500276116952 11 evm.model.contig_652.1 no hits & (original description: no original description) 0.9198427157980296 12 evm.model.contig_429.5 no hits & (original description: no original description) 0.9160663191335098 40 evm.model.contig_3405.5 no hits & (original description: no original description) 0.915811556645159 15 evm.model.contig_2157.20 no hits & (original description: no original description) 0.9144187458122611 24 evm.model.contig_2310.1 (original description: no original description) 0.914222304144891 97 evm.model.contig_3422.7 no hits & (original description: no original description) 0.9116705018985575 44 evm.model.contig_442.7 (at5g48570 : 107.0) FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: rotamase FKBP 1 (TAIR:AT3G25230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43207|fkb70_wheat : 102.0) 70 kDa peptidyl-prolyl isomerase (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) - Triticum aestivum (Wheat) & (reliability: 212.0) & (original description: no original description) 0.911145965441109 73 evm.model.contig_3597.6 (at5g41360 : 736.0) Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.; homolog of Xeroderma pigmentosum complementation group B 2 (XPB2); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV-B, N-terminal protein myristoylation; EXPRESSED IN: whole plant; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: homolog of xeroderma pigmentosum complementation group B 1 (TAIR:AT5G41370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1472.0) & (original description: no original description) 0.9099892785322656 44 evm.model.contig_503.10 no hits & (original description: no original description) 0.9087118401350035 24 evm.model.contig_4488.10 (at1g16445 : 97.4) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Putative rRNA methylase (InterPro:IPR010719); Has 1208 Blast hits to 1208 proteins in 621 species: Archae - 2; Bacteria - 1139; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). & (reliability: 194.8) & (original description: no original description) 0.9086407397446253 25 evm.model.contig_2033.23 no hits & (original description: no original description) 0.9074279563922584 26 evm.model.contig_479.15 no hits & (original description: no original description) 0.9073963907874439 78 evm.model.contig_2062.25 no hits & (original description: no original description) 0.9063359928540817 50 evm.model.contig_611.15 no hits & (original description: no original description) 0.9053424274596639 63 evm.model.contig_2044.12 (at1g08840 : 403.0) embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD/REP type (InterPro:IPR000212), DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1). & (reliability: 806.0) & (original description: no original description) 0.9049344818353747 91 evm.model.contig_451.3 no hits & (original description: no original description) 0.9038877222455444 64 evm.model.contig_514.2 no hits & (original description: no original description) 0.9027766672926355 68 evm.model.contig_2029.4 no hits & (original description: no original description) 0.9013135041229745 91 evm.model.contig_4404.25 (at5g63320 : 84.0) Encodes NPX1 (Nuclear Protein X1), a nuclear factor regulating abscisic acid responses.; nuclear protein X1 (NPX1); FUNCTIONS IN: protein binding, transcription repressor activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: bromodomain and extraterminal domain protein 9 (TAIR:AT5G14270.2); Has 5825 Blast hits to 4645 proteins in 254 species: Archae - 0; Bacteria - 2; Metazoa - 3479; Fungi - 996; Plants - 604; Viruses - 2; Other Eukaryotes - 742 (source: NCBI BLink). & (reliability: 168.0) & (original description: no original description) 0.9010267168799272 42 evm.model.contig_498.9 no hits & (original description: no original description) 0.8990907713287732 67 evm.model.contig_2015.8 (at4g38890 : 95.9) FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink). & (reliability: 191.8) & (original description: no original description) 0.8977864181016858 53 evm.model.contig_476.4 (at4g24160 : 125.0) Encodes a soluble lysophosphatidic acid acyltransferase with additional triacylglycerol lipase and phosphatidylcholine hydrolyzing enzymatic activities. Plays a pivotal role in maintaining the lipid homeostasis by regulating both phospholipid and neutral lipid levels.; alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G64670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description) 0.8977518450886959 63 evm.model.contig_2019.12 no hits & (original description: no original description) 0.8964226900653993 48 evm.model.contig_4454.6 no hits & (original description: no original description) 0.8948761458303116 74 evm.model.contig_516.8 (at2g47420 : 348.0) Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink). & (reliability: 696.0) & (original description: no original description) 0.8933093009247678 55 evm.model.contig_2186.9 no hits & (original description: no original description) 0.8919502035101048 59 evm.model.contig_2306.1 (at5g04360 : 153.0) Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.; limit dextrinase (LDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1); Has 6260 Blast hits to 6253 proteins in 1613 species: Archae - 73; Bacteria - 5462; Metazoa - 45; Fungi - 1; Plants - 262; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink). & (reliability: 282.0) & (original description: no original description) 0.8913454299821205 63 evm.model.contig_3532.5 no hits & (original description: no original description) 0.8906290827420573 65 evm.model.contig_600.3 no hits & (original description: no original description) 0.8900442087730134 66 evm.model.contig_618.1 no hits & (original description: no original description) 0.8895631132899965 70 evm.model.contig_3564.2 no hits & (original description: no original description) 0.8891772788862627 79 evm.model.contig_462.8 no hits & (original description: no original description) 0.8890736530727932 80 evm.model.contig_2276.5 no hits & (original description: no original description) 0.8883670932690234 77 evm.model.contig_2059.16 (at4g31170 : 90.1) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-like, ATMRK (InterPro:IPR015783), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G24360.1). & (reliability: 180.2) & (original description: no original description) 0.8880463973775004 78 evm.model.contig_4584.1 no hits & (original description: no original description) 0.8862926795709158 82 evm.model.contig_4436.2 no hits & (original description: no original description) 0.8862204164930105 83 evm.model.contig_3532.6 no hits & (original description: no original description) 0.8837753805707552 86 evm.model.contig_3562.1 no hits & (original description: no original description) 0.8794333920255114 96 evm.model.contig_4501.5 no hits & (original description: no original description) 0.8790653638839305 98