Sequence Description Alias PCC hrr evm.model.contig_503.4 (at5g13840 : 377.0) FIZZY-related 3 (FZR3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: FIZZY-related 2 (TAIR:AT4G22910.1). & (reliability: 752.0) & (original description: no original description) 0.9454222990612356 7 evm.model.contig_2494.15 (at1g07615 : 160.0) GTP-binding protein Obg/CgtA; FUNCTIONS IN: magnesium ion binding, GTP binding, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP1/OBG family protein (TAIR:AT5G18570.1); Has 28571 Blast hits to 22114 proteins in 2954 species: Archae - 681; Bacteria - 18882; Metazoa - 872; Fungi - 715; Plants - 429; Viruses - 2; Other Eukaryotes - 6990 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description) 0.9438182088714212 2 evm.model.contig_4527.1 (at3g06010 : 582.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 442.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (gnl|cdd|68872 : 96.6) no description available & (reliability: 1164.0) & (original description: no original description) 0.9365616278320279 36 evm.model.contig_2310.1 (original description: no original description) 0.934524187632096 34 evm.model.contig_457.2 (at1g77300 : 166.0) Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.Required for ovule, embryo sac, anther and pollen development.; EARLY FLOWERING IN SHORT DAYS (EFS); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific); INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: SET domain group 26 (TAIR:AT1G76710.2); Has 6227 Blast hits to 6009 proteins in 532 species: Archae - 3; Bacteria - 662; Metazoa - 2557; Fungi - 556; Plants - 1120; Viruses - 3; Other Eukaryotes - 1326 (source: NCBI BLink). & (gnl|cdd|68872 : 103.0) no description available & (reliability: 332.0) & (original description: no original description) 0.9248068209092499 6 evm.model.contig_508.4 no hits & (original description: no original description) 0.9219168527987432 17 evm.model.contig_441.3 no hits & (original description: no original description) 0.9193402539743626 40 evm.model.contig_2279.7 no hits & (original description: no original description) 0.9181839591180913 12 evm.model.contig_2057.8 no hits & (original description: no original description) 0.9170208379062199 10 evm.model.contig_2029.4 no hits & (original description: no original description) 0.9147204782722796 53 evm.model.contig_686.1 no hits & (original description: no original description) 0.914560229439531 13 evm.model.contig_651.4 no hits & (original description: no original description) 0.9140020072843884 15 evm.model.contig_662.3 (at1g12370 : 315.0) encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele; photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 2452 Blast hits to 2448 proteins in 660 species: Archae - 33; Bacteria - 979; Metazoa - 129; Fungi - 60; Plants - 123; Viruses - 39; Other Eukaryotes - 1089 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description) 0.9136428457721109 34 evm.model.contig_547.2 no hits & (original description: no original description) 0.9122048855247663 17 evm.model.contig_2280.4 (at5g48220 : 113.0) Aldolase-type TIM barrel family protein; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Indole-3-glycerol phosphate synthase, conserved site (InterPro:IPR001468), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT2G04400.1). & (reliability: 226.0) & (original description: no original description) 0.9117053962730064 19 evm.model.contig_3532.6 no hits & (original description: no original description) 0.9110969767324414 20 evm.model.contig_4432.11 (at5g03905 : 102.0) Iron-sulphur cluster biosynthesis family protein; FUNCTIONS IN: iron-sulfur cluster binding, structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: chloroplast-localized ISCA-like protein (TAIR:AT1G10500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.9103291356917738 91 evm.model.contig_547.1 (at2g26140 : 618.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 4 (ftsh4); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 11 (TAIR:AT5G53170.1); Has 39775 Blast hits to 37259 proteins in 3240 species: Archae - 1584; Bacteria - 15744; Metazoa - 5149; Fungi - 3764; Plants - 3335; Viruses - 40; Other Eukaryotes - 10159 (source: NCBI BLink). & (q5z974|ftsh_orysa : 375.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1236.0) & (original description: no original description) 0.9101989442121764 81 evm.model.contig_451.3 no hits & (original description: no original description) 0.9072013973508142 56 evm.model.contig_2241.1 no hits & (original description: no original description) 0.9042874460401078 27 evm.model.contig_3422.7 no hits & (original description: no original description) 0.9038065044832533 67 evm.model.contig_2019.5 (at1g79810 : 91.3) Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.; REVERSAL OF THE DET PHENOTYPE 3 (TED3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, peroxisome organization, photomorphogenesis; LOCATED IN: cytosol, peroxisome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Pex, N-terminal (InterPro:IPR006845), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 182.6) & (original description: no original description) 0.9033232194937353 29 evm.model.contig_483.1 (at5g26980 : 139.0) member of SYP4 Gene Family; syntaxin of plants 41 (SYP41); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 43 (TAIR:AT3G05710.2); Has 2253 Blast hits to 2241 proteins in 274 species: Archae - 0; Bacteria - 54; Metazoa - 961; Fungi - 480; Plants - 362; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description) 0.9028338375068281 88 evm.model.contig_2663.9 no hits & (original description: no original description) 0.9022299361048864 32 evm.model.contig_2020.24 no hits & (original description: no original description) 0.8999230135920129 46 evm.model.contig_531.2 (at5g24810 : 438.0) ABC1 family protein; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2). & (reliability: 876.0) & (original description: no original description) 0.8995278231279127 86 evm.model.contig_772.1 (at5g35080 : 92.4) INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description) 0.8979500043253343 83 evm.model.contig_2137.1 no hits & (original description: no original description) 0.8976210112152458 38 evm.model.contig_3433.1 (o78328|dxs_capan : 748.0) Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor (EC 2.2.1.7) (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (CapTKT2) - Capsicum annuum (Bell pepper) & (at4g15560 : 744.0) Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis; CLOROPLASTOS ALTERADOS 1 (CLA1); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826), Transketolase-like, C-terminal (InterPro:IPR015941), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 1-deoxy-D-xylulose 5-phosphate synthase 1 (TAIR:AT3G21500.2); Has 24450 Blast hits to 24392 proteins in 2940 species: Archae - 267; Bacteria - 15281; Metazoa - 526; Fungi - 278; Plants - 446; Viruses - 0; Other Eukaryotes - 7652 (source: NCBI BLink). & (reliability: 1488.0) & (original description: no original description) 0.8964940399445914 41 evm.model.contig_503.10 no hits & (original description: no original description) 0.8962525497530727 43 evm.model.contig_4488.10 (at1g16445 : 97.4) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Putative rRNA methylase (InterPro:IPR010719); Has 1208 Blast hits to 1208 proteins in 621 species: Archae - 2; Bacteria - 1139; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). & (reliability: 194.8) & (original description: no original description) 0.8946982725423189 46 evm.model.contig_4436.2 no hits & (original description: no original description) 0.8936522130972172 50 evm.model.contig_574.1 no hits & (original description: no original description) 0.8919048926946441 52 evm.model.contig_531.3 no hits & (original description: no original description) 0.8913454299821205 63 evm.model.contig_2115.2 (q9g4f5|cysa_cucsa : 130.0) Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) (Sulfate-transporting ATPase) - Cucumis sativus (Cucumber) & (at1g65410 : 122.0) Encodes a member of NAP subfamily of transporters. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; non-intrinsic ABC protein 11 (NAP11); FUNCTIONS IN: transporter activity, ATPase activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: non-intrinsic ABC protein 3 (TAIR:AT1G67940.1); Has 424474 Blast hits to 380294 proteins in 4085 species: Archae - 7338; Bacteria - 330543; Metazoa - 9238; Fungi - 6335; Plants - 5254; Viruses - 18; Other Eukaryotes - 65748 (source: NCBI BLink). & (reliability: 244.0) & (original description: no original description) 0.887553645509763 68 evm.model.contig_652.1 no hits & (original description: no original description) 0.8870896128961684 68 evm.model.contig_2157.20 no hits & (original description: no original description) 0.8868850161853454 92 evm.model.contig_2126.17 no hits & (original description: no original description) 0.8860733922035173 71 evm.model.contig_462.8 no hits & (original description: no original description) 0.8848775094723702 91 evm.model.contig_2019.12 no hits & (original description: no original description) 0.8832718141790284 77 evm.model.contig_443.2 no hits & (original description: no original description) 0.8831306398891732 77 evm.model.contig_3494.2 no hits & (original description: no original description) 0.8827982484420978 75 evm.model.contig_3544.1 "(at4g15110 : 514.0) member of CYP97B; ""cytochrome P450, family 97, subfamily B, polypeptide 3"" (CYP97B3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 97, subfamily A, polypeptide 3 (TAIR:AT1G31800.1); Has 31568 Blast hits to 31460 proteins in 1570 species: Archae - 46; Bacteria - 3266; Metazoa - 11509; Fungi - 6986; Plants - 8573; Viruses - 6; Other Eukaryotes - 1182 (source: NCBI BLink). & (o48921|c97b2_soybn : 513.0) Cytochrome P450 97B2 (EC 1.14.-.-) - Glycine max (Soybean) & (reliability: 1028.0) & (original description: no original description)" 0.8827625465240022 76 evm.model.contig_2173.15 no hits & (original description: no original description) 0.8827534420331368 77 evm.model.contig_660.1 no hits & (original description: no original description) 0.8817584312031113 81 evm.model.contig_3562.1 no hits & (original description: no original description) 0.8772843169016992 90 evm.model.contig_3468.12 (q43468|stip_soybn : 100.0) Heat shock protein STI (Stress-inducible protein) (GmSTI) - Glycine max (Soybean) & (at4g12400 : 94.0) stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 188.0) & (original description: no original description) 0.8747388979902982 97