Sequence Description Alias PCC hrr evm.model.contig_527.3 no hits & (original description: no original description) 0.950066529366898 1 evm.model.contig_2020.24 no hits & (original description: no original description) 0.9371552410683393 4 evm.model.contig_4436.2 no hits & (original description: no original description) 0.9293252743833308 4 evm.model.contig_2038.1 (at4g02570 : 261.0) Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.; cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, conserved site (InterPro:IPR016157), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1). & (reliability: 522.0) & (original description: no original description) 0.9291682849215592 4 evm.model.contig_653.4 no hits & (original description: no original description) 0.9276456060492284 7 evm.model.contig_2172.5 (at5g21326 : 103.0) Ca2+regulated serine-threonine protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 3 (TAIR:AT2G26980.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 97.4) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 198.0) & (original description: no original description) 0.9269051012791801 28 evm.model.contig_547.2 no hits & (original description: no original description) 0.9251416589811653 8 evm.model.contig_3422.7 no hits & (original description: no original description) 0.9227504208890138 25 evm.model.contig_2084.18 no hits & (original description: no original description) 0.9207441561312874 9 evm.model.contig_3416.13 (at5g03430 : 187.0) phosphoadenosine phosphosulfate (PAPS) reductase family protein; FUNCTIONS IN: transferase activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Molybdopterin binding (InterPro:IPR001453); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description) 0.9186398514958569 12 evm.model.contig_2020.37 (at2g17520 : 254.0) Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants.; IRE1A; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), KEN domain, ribonuclease activator (InterPro:IPR010513), PUG domain (InterPro:IPR006567), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: inositol requiring 1-1 (TAIR:AT5G24360.1); Has 104790 Blast hits to 103944 proteins in 4127 species: Archae - 110; Bacteria - 12550; Metazoa - 37627; Fungi - 10369; Plants - 27162; Viruses - 328; Other Eukaryotes - 16644 (source: NCBI BLink). & (reliability: 508.0) & (original description: no original description) 0.9180119460865522 72 evm.model.contig_498.3 (at4g08350 : 215.0) global transcription factor group A2 (GTA2); FUNCTIONS IN: transcription elongation regulator activity, structural constituent of ribosome, sequence-specific DNA binding transcription factor activity; INVOLVED IN: translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: ribosome, intracellular; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription elongation factor Spt5 (InterPro:IPR017071), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), KOW (InterPro:IPR005824), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), Transcription elongation factor Spt5, NGN domain (InterPro:IPR005100); BEST Arabidopsis thaliana protein match is: Transcription elongation factor Spt5 (TAIR:AT2G34210.1); Has 14630 Blast hits to 9620 proteins in 607 species: Archae - 121; Bacteria - 647; Metazoa - 6069; Fungi - 2592; Plants - 1061; Viruses - 307; Other Eukaryotes - 3833 (source: NCBI BLink). & (reliability: 430.0) & (original description: no original description) 0.9178825928886922 12 evm.model.contig_2015.8 (at4g38890 : 95.9) FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink). & (reliability: 191.8) & (original description: no original description) 0.9149660851452479 26 evm.model.contig_462.8 no hits & (original description: no original description) 0.9146015504507681 22 evm.model.contig_3427.11 no hits & (original description: no original description) 0.9117664530929137 15 evm.model.contig_458.10 no hits & (original description: no original description) 0.9111335581110928 16 evm.model.contig_519.4 no hits & (original description: no original description) 0.9095052734510666 17 evm.model.contig_2341.1 (at1g75660 : 358.0) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.; 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). & (reliability: 716.0) & (original description: no original description) 0.9062573282980069 19 evm.model.contig_4401.6 (at1g18260 : 92.8) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description) 0.9057720171932742 19 evm.model.contig_2032.16 (q9mun1|cysa_mesvi : 154.0) Probable sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) (Sulfate-transporting ATPase) - Mesostigma viride & (at1g65410 : 112.0) Encodes a member of NAP subfamily of transporters. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; non-intrinsic ABC protein 11 (NAP11); FUNCTIONS IN: transporter activity, ATPase activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: non-intrinsic ABC protein 3 (TAIR:AT1G67940.1); Has 424474 Blast hits to 380294 proteins in 4085 species: Archae - 7338; Bacteria - 330543; Metazoa - 9238; Fungi - 6335; Plants - 5254; Viruses - 18; Other Eukaryotes - 65748 (source: NCBI BLink). & (reliability: 224.0) & (original description: no original description) 0.9055557120472469 20 evm.model.contig_589.4 no hits & (original description: no original description) 0.9047885703072072 31 evm.model.contig_441.31 (at5g12130 : 186.0) PIGMENT DEFECTIVE 149 (PDE149); CONTAINS InterPro DOMAIN/s: Integral membrane protein TerC (InterPro:IPR005496), Integral membrane protein TerC, riboswitch-linked (InterPro:IPR022369); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description) 0.9032858987144637 22 evm.model.contig_2251.5 no hits & (original description: no original description) 0.9027555637871514 23 evm.model.contig_4424.7 no hits & (original description: no original description) 0.9024318276990718 90 evm.model.contig_3396.4 (at2g27490 : 120.0) AT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA.; ATCOAE; FUNCTIONS IN: ATP binding, dephospho-CoA kinase activity; INVOLVED IN: coenzyme A biosynthetic process; LOCATED IN: peroxisome, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dephospho-CoA kinase (InterPro:IPR001977); Has 7074 Blast hits to 7073 proteins in 2608 species: Archae - 1; Bacteria - 4684; Metazoa - 251; Fungi - 135; Plants - 58; Viruses - 0; Other Eukaryotes - 1945 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.9012207746516997 25 evm.model.contig_2033.15 (at1g12580 : 191.0) phosphoenolpyruvate carboxylase-related kinase 1 (PEPKR1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 34 (TAIR:AT5G19360.1); Has 122716 Blast hits to 120722 proteins in 3168 species: Archae - 154; Bacteria - 14954; Metazoa - 44101; Fungi - 12932; Plants - 28847; Viruses - 523; Other Eukaryotes - 21205 (source: NCBI BLink). & (p53684|cdpk3_orysa : 184.0) Calcium-dependent protein kinase, isoform 11 (EC 2.7.11.1) (CDPK 11) - Oryza sativa (Rice) & (reliability: 382.0) & (original description: no original description) 0.8970031408091417 53 evm.model.contig_477.9 no hits & (original description: no original description) 0.8963377736620439 27 evm.model.contig_2139.16 (at4g02460 : 155.0) Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.; POSTMEIOTIC SEGREGATION 1 (PMS1); FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), MutL, C-terminal, dimerisation (InterPro:IPR014790), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Post Meiotic Segregation 2 (InterPro:IPR015434), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 (TAIR:AT4G09140.1); Has 10471 Blast hits to 7086 proteins in 2377 species: Archae - 138; Bacteria - 7516; Metazoa - 568; Fungi - 666; Plants - 148; Viruses - 0; Other Eukaryotes - 1435 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description) 0.8962548702899221 94 evm.model.contig_2118.3 (at2g05590 : 98.6) TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT4G39870.2); Has 907 Blast hits to 899 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 117; Plants - 118; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink). & (reliability: 193.4) & (original description: no original description) 0.8959151163213912 29 evm.model.contig_517.6 (at3g59630 : 96.7) diphthamide synthesis DPH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Diphthamide synthesis, DPH1/DHP2 (InterPro:IPR002728), Diphthamide synthesis, DHP2 (InterPro:IPR010014); BEST Arabidopsis thaliana protein match is: diphthamide synthesis DPH2 family protein (TAIR:AT5G62030.1); Has 995 Blast hits to 948 proteins in 287 species: Archae - 127; Bacteria - 0; Metazoa - 243; Fungi - 308; Plants - 94; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 193.4) & (original description: no original description) 0.8958123011272794 30 evm.model.contig_469.9 no hits & (original description: no original description) 0.8933287230797592 31 evm.model.contig_566.7 no hits & (original description: no original description) 0.8922596024938073 86 evm.model.contig_3450.14 no hits & (original description: no original description) 0.889863086323287 45 evm.model.contig_2032.19 no hits & (original description: no original description) 0.8896190042981379 34 evm.model.contig_2093.6 (at5g58030 : 159.0) Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Trs31 (InterPro:IPR016696); Has 560 Blast hits to 545 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 199; Plants - 63; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description) 0.8885784550364285 35 evm.model.contig_2059.16 (at4g31170 : 90.1) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-like, ATMRK (InterPro:IPR015783), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G24360.1). & (reliability: 180.2) & (original description: no original description) 0.8871932328926052 82 evm.model.contig_3426.17 no hits & (original description: no original description) 0.8868327791277985 37 evm.model.contig_3509.8 no hits & (original description: no original description) 0.88675268136614 39 evm.model.contig_544.6 (at1g18260 : 88.2) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 172.6) & (original description: no original description) 0.8862586859947308 39 evm.model.contig_4424.8 no hits & (original description: no original description) 0.8859213497922678 40 evm.model.contig_3397.3 no hits & (original description: no original description) 0.8852950565265717 89 evm.model.contig_3564.2 no hits & (original description: no original description) 0.885165985059936 92 evm.model.contig_2448.1 no hits & (original description: no original description) 0.8850885783976445 43 evm.model.contig_2098.14 no hits & (original description: no original description) 0.8849791764035579 71 evm.model.contig_600.3 no hits & (original description: no original description) 0.8844354452974003 49 evm.model.contig_763.2 (at1g09770 : 221.0) Member of MYB3R- and R2R3- type MYB- encoding genes. Essential for plant innate immunity. Interacts with MOS4 and PRL1.; cell division cycle 5 (CDC5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response signaling pathway, resistance gene-dependent, defense response to bacterium, defense response to fungus, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3351 (InterPro:IPR021786), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-4 (TAIR:AT5G11510.1); Has 13137 Blast hits to 10813 proteins in 768 species: Archae - 14; Bacteria - 356; Metazoa - 3570; Fungi - 914; Plants - 4936; Viruses - 8; Other Eukaryotes - 3339 (source: NCBI BLink). & (reliability: 442.0) & (original description: no original description) 0.8836112850061317 90 evm.model.contig_747.4 no hits & (original description: no original description) 0.8831948259024738 47 evm.model.contig_2628.1 no hits & (original description: no original description) 0.8829238775017497 48 evm.model.contig_2048.6 no hits & (original description: no original description) 0.8816452207879741 54 evm.model.contig_479.7 (at1g65040 : 262.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G16090.1); Has 7753 Blast hits to 7726 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 2329; Fungi - 701; Plants - 3577; Viruses - 25; Other Eukaryotes - 1121 (source: NCBI BLink). & (reliability: 524.0) & (original description: no original description) 0.8802433633229372 66 evm.model.contig_2284.22 no hits & (original description: no original description) 0.8801964425398473 52 evm.model.contig_2139.1 (at3g08720 : 201.0) Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.; Arabidopsis thaliana protein kinase 19 (ATPK19); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, C-terminal (InterPro:IPR017892), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: protein-serine kinase 1 (TAIR:AT3G08730.1); Has 133901 Blast hits to 131707 proteins in 4554 species: Archae - 204; Bacteria - 15943; Metazoa - 48718; Fungi - 13429; Plants - 32816; Viruses - 561; Other Eukaryotes - 22230 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 120.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 402.0) & (original description: no original description) 0.879219292804801 54 evm.model.contig_4464.8 no hits & (original description: no original description) 0.8782370458384511 55 evm.model.contig_4429.6 no hits & (original description: no original description) 0.8771320069992794 56 evm.model.contig_4509.1 (at1g33320 : 182.0) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, cystathionine gamma-synthase activity, catalytic activity; INVOLVED IN: methionine biosynthetic process, cellular amino acid metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT3G01120.1); Has 20280 Blast hits to 20270 proteins in 2456 species: Archae - 214; Bacteria - 11714; Metazoa - 220; Fungi - 816; Plants - 267; Viruses - 0; Other Eukaryotes - 7049 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description) 0.8757178421627826 58 evm.model.contig_653.3 no hits & (original description: no original description) 0.8756923558255314 59 evm.model.contig_4456.4 no hits & (original description: no original description) 0.8752363718872922 60 evm.model.contig_4515.4 no hits & (original description: no original description) 0.8745202227928639 61 evm.model.contig_4425.4 (at2g18510 : 226.0) embryo defective 2444 (emb2444); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 66829 Blast hits to 41224 proteins in 1633 species: Archae - 50; Bacteria - 5635; Metazoa - 30219; Fungi - 10282; Plants - 12025; Viruses - 917; Other Eukaryotes - 7701 (source: NCBI BLink). & (gnl|cdd|68872 : 85.1) no description available & (reliability: 452.0) & (original description: no original description) 0.8736860406224054 62 evm.model.contig_2025.43 (original description: no original description) 0.873377654287049 63 evm.model.contig_2139.2 no hits & (original description: no original description) 0.8728946566896879 65 evm.model.contig_469.14 no hits & (original description: no original description) 0.8725411777936115 66 evm.model.contig_3620.1 no hits & (original description: no original description) 0.871948484324302 75 evm.model.contig_2017.12 (at3g28030 : 250.0) Required for repair of pyrimidine-pyrimidinone (6-4) dimers.; ULTRAVIOLET HYPERSENSITIVE 3 (UVH3); FUNCTIONS IN: protein binding, nuclease activity; INVOLVED IN: DNA repair, response to UV-B, response to heat, non-photoreactive DNA repair; LOCATED IN: nucleus; EXPRESSED IN: stem, leaf whorl, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), Xeroderma pigmentosum group G protein (InterPro:IPR001044), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G01880.1); Has 8115 Blast hits to 5779 proteins in 624 species: Archae - 528; Bacteria - 414; Metazoa - 2441; Fungi - 1496; Plants - 576; Viruses - 71; Other Eukaryotes - 2589 (source: NCBI BLink). & (q9sxq6|fen1a_orysa : 80.9) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a) - Oryza sativa (Rice) & (reliability: 500.0) & (original description: no original description) 0.8714281424672001 69 evm.model.contig_566.6 (at3g58800 : 139.0) unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description) 0.8698327344505201 71 evm.model.contig_2025.30 no hits & (original description: no original description) 0.8693181170801924 86 evm.model.contig_3606.2 (at2g38130 : 144.0) Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.; ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description) 0.8653332039042759 77 evm.model.contig_4601.4 no hits & (original description: no original description) 0.86527928692556 78 evm.model.contig_4413.2 no hits & (original description: no original description) 0.8647183223834753 79 evm.model.contig_2505.5 no hits & (original description: no original description) 0.8625511049178206 83 evm.model.contig_618.3 (at5g51740 : 127.0) Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 6369 Blast hits to 6329 proteins in 1292 species: Archae - 10; Bacteria - 4324; Metazoa - 65; Fungi - 153; Plants - 45; Viruses - 0; Other Eukaryotes - 1772 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description) 0.8617622938680914 84 evm.model.contig_2284.16 (at1g59760 : 812.0) RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink). & (reliability: 1624.0) & (original description: no original description) 0.8609966834330159 85 evm.model.contig_2132.2 no hits & (original description: no original description) 0.8600618689544097 90 evm.model.contig_4532.1 no hits & (original description: no original description) 0.8597817021815539 87 evm.model.contig_823.1 no hits & (original description: no original description) 0.859548030132308 88 evm.model.contig_3450.11 no hits & (original description: no original description) 0.8576815806757576 91 evm.model.contig_583.8 no hits & (original description: no original description) 0.8569509786140904 92 evm.model.contig_3811.1 no hits & (original description: no original description) 0.8561448844635235 94 evm.model.contig_4418.18 (gnl|cdd|68872 : 118.0) no description available & (at3g51620 : 86.7) PAP/OAS1 substrate-binding domain superfamily; BEST Arabidopsis thaliana protein match is: nucleotidyltransferases (TAIR:AT3G61690.1); Has 386 Blast hits to 356 proteins in 104 species: Archae - 0; Bacteria - 4; Metazoa - 102; Fungi - 40; Plants - 181; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). & (reliability: 173.4) & (original description: no original description) 0.8560690702410605 96 evm.model.contig_2279.13 no hits & (original description: no original description) 0.8552880686381071 97 evm.model.contig_4560.1 (at2g44580 : 94.7) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 189.4) & (original description: no original description) 0.8550301593549403 98 evm.model.contig_589.3 no hits & (original description: no original description) 0.8548033354378778 99