Sequence Description Alias PCC hrr evm.model.contig_4404.15 (at1g78280 : 174.0) transferases, transferring glycosyl groups; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06550.1); Has 1510 Blast hits to 1497 proteins in 307 species: Archae - 0; Bacteria - 312; Metazoa - 658; Fungi - 137; Plants - 199; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description) 0.8949792299890715 29 evm.model.contig_591.2 no hits & (original description: no original description) 0.8920669972215252 48 evm.model.contig_3643.1 no hits & (original description: no original description) 0.8894835530206162 49 evm.model.contig_2075.8 (at4g03430 : 345.0) Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.; EMBRYO DEFECTIVE 2770 (EMB2770); FUNCTIONS IN: binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold, response to abiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Ubiquitin supergroup (InterPro:IPR019955), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: beta-galactosidase 14 (TAIR:AT4G38590.1); Has 3874 Blast hits to 2098 proteins in 386 species: Archae - 98; Bacteria - 366; Metazoa - 1194; Fungi - 916; Plants - 656; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink). & (gnl|cdd|68872 : 86.2) no description available & (reliability: 690.0) & (original description: no original description) 0.8881201546398465 11 evm.model.contig_653.3 no hits & (original description: no original description) 0.8873675470904043 7 evm.model.contig_457.2 (at1g77300 : 166.0) Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.Required for ovule, embryo sac, anther and pollen development.; EARLY FLOWERING IN SHORT DAYS (EFS); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific); INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: SET domain group 26 (TAIR:AT1G76710.2); Has 6227 Blast hits to 6009 proteins in 532 species: Archae - 3; Bacteria - 662; Metazoa - 2557; Fungi - 556; Plants - 1120; Viruses - 3; Other Eukaryotes - 1326 (source: NCBI BLink). & (gnl|cdd|68872 : 103.0) no description available & (reliability: 332.0) & (original description: no original description) 0.8853306664214459 40 evm.model.contig_2057.12 (at3g06483 : 292.0) Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1α subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor. PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily.; pyruvate dehydrogenase kinase (PDK); FUNCTIONS IN: ATP binding, pyruvate dehydrogenase (acetyl-transferring) kinase activity, histidine phosphotransfer kinase activity; INVOLVED IN: signal transduction, peptidyl-histidine phosphorylation, phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, core (InterPro:IPR005467), Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, mitochondrial (InterPro:IPR018955), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); Has 1925 Blast hits to 1799 proteins in 531 species: Archae - 0; Bacteria - 712; Metazoa - 467; Fungi - 468; Plants - 102; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink). & (reliability: 584.0) & (original description: no original description) 0.8846666521385107 19 evm.model.contig_574.1 no hits & (original description: no original description) 0.8840210457030281 48 evm.model.contig_4483.8 no hits & (original description: no original description) 0.8837387654006925 54 evm.model.contig_450.5 no hits & (original description: no original description) 0.881409966040853 68 evm.model.contig_4443.2 no hits & (original description: no original description) 0.8790915521526168 52 evm.model.contig_438.2 no hits & (original description: no original description) 0.8784768316778087 21 evm.model.contig_3426.17 no hits & (original description: no original description) 0.8781002038409765 22 evm.model.contig_3450.24 no hits & (original description: no original description) 0.8775767335552254 30 evm.model.contig_4500.2 (at5g41080 : 99.0) PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description) 0.8688156774281462 40 evm.model.contig_2296.11 no hits & (original description: no original description) 0.8680861382235937 19 evm.model.contig_3602.1 no hits & (original description: no original description) 0.8678566863618089 44 evm.model.contig_3384.15 no hits & (original description: no original description) 0.8670725206957458 87 evm.model.contig_438.8 no hits & (original description: no original description) 0.8664830860081782 23 evm.model.contig_4413.2 no hits & (original description: no original description) 0.8659491528342017 29 evm.model.contig_3438.5 (at3g05210 : 162.0) encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10.; ERCC1; FUNCTIONS IN: 5'-flap endonuclease activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), DNA repair protein rad10 (InterPro:IPR004579), RuvA domain 2-like (InterPro:IPR010994); Has 658 Blast hits to 452 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 153; Plants - 44; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink). & (reliability: 324.0) & (original description: no original description) 0.8656782913024752 94 evm.model.contig_2084.18 no hits & (original description: no original description) 0.8644056066953666 67 evm.model.contig_3486.7 no hits & (original description: no original description) 0.8615595441475399 30 evm.model.contig_3538.1 no hits & (original description: no original description) 0.8603585697235262 30 evm.model.contig_2272.2 (at1g45160 : 146.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17850.1); Has 126537 Blast hits to 124799 proteins in 4593 species: Archae - 166; Bacteria - 15103; Metazoa - 47179; Fungi - 12961; Plants - 29525; Viruses - 530; Other Eukaryotes - 21073 (source: NCBI BLink). & (p47997|g11a_orysa : 102.0) Protein kinase G11A (EC 2.7.11.1) - Oryza sativa (Rice) & (reliability: 272.0) & (original description: no original description) 0.8591748657150204 62 evm.model.contig_2303.7 no hits & (original description: no original description) 0.8568921328233855 50 evm.model.contig_4399.2 no hits & (original description: no original description) 0.8548485902485469 36 evm.model.contig_3497.5 no hits & (original description: no original description) 0.8547950656138491 50 evm.model.contig_507.6 (at1g76040 : 145.0) member of Calcium Dependent Protein Kinase; calcium-dependent protein kinase 29 (CPK29); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 21 (TAIR:AT4G04720.1); Has 142530 Blast hits to 132137 proteins in 3984 species: Archae - 133; Bacteria - 14530; Metazoa - 52901; Fungi - 18639; Plants - 31038; Viruses - 504; Other Eukaryotes - 24785 (source: NCBI BLink). & (p53684|cdpk3_orysa : 142.0) Calcium-dependent protein kinase, isoform 11 (EC 2.7.11.1) (CDPK 11) - Oryza sativa (Rice) & (reliability: 268.0) & (original description: no original description) 0.8526511302786236 40 evm.model.contig_748.2 no hits & (original description: no original description) 0.8512063803776801 91 evm.model.contig_550.5 (at2g39670 : 127.0) Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6992 Blast hits to 6986 proteins in 2311 species: Archae - 11; Bacteria - 5102; Metazoa - 1; Fungi - 1; Plants - 134; Viruses - 5; Other Eukaryotes - 1738 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description) 0.8487009188799319 44 evm.model.contig_500.6 no hits & (original description: no original description) 0.8485649497277 46 evm.model.contig_2190.6 no hits & (original description: no original description) 0.8447217574536132 50 evm.model.contig_2131.2 (q651u1|cryd_orysa : 149.0) Cryptochrome DASH, chloroplast/mitochondrial precursor - Oryza sativa (Rice) & (at5g24850 : 139.0) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.; cryptochrome 3 (CRY3); FUNCTIONS IN: FMN binding, DNA binding, DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome, DASH (InterPro:IPR014133), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: photolyase/blue-light receptor 2 (TAIR:AT2G47590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description) 0.8434753669254896 71 evm.model.contig_2421.8 no hits & (original description: no original description) 0.8423233559819805 57 evm.model.contig_3635.2 no hits & (original description: no original description) 0.8416781595205106 59 evm.model.contig_512.8 (at5g15770 : 117.0) Encodes a putative glucose-6-phosphate acetyltransferase involved in UDP-N-acetylglucosamine biosynthesis.; glucose-6-phosphate acetyltransferase 1 (GNA1); FUNCTIONS IN: glucosamine 6-phosphate N-acetyltransferase activity, N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 806 Blast hits to 799 proteins in 307 species: Archae - 17; Bacteria - 208; Metazoa - 186; Fungi - 170; Plants - 47; Viruses - 3; Other Eukaryotes - 175 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description) 0.8369496533442321 67 evm.model.contig_431.7 no hits & (original description: no original description) 0.8362949703166763 69 evm.model.contig_3438.2 no hits & (original description: no original description) 0.8360837431124185 70 evm.model.contig_3401.11 (at5g10480 : 129.0) Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).; PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1). & (reliability: 258.0) & (original description: no original description) 0.8336222392628972 74 evm.model.contig_3683.1 no hits & (original description: no original description) 0.8309862028659954 78 evm.model.contig_3423.12 no hits & (original description: no original description) 0.8302710282142174 81 evm.model.contig_620.3 no hits & (original description: no original description) 0.829135814387161 85 evm.model.contig_3396.5 (at5g40200 : 356.0) Encodes a putative DegP protease.; DegP protease 9 (DegP9); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP protease 2 (TAIR:AT2G47940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 712.0) & (original description: no original description) 0.8290645653838478 86 evm.model.contig_4483.6 no hits & (original description: no original description) 0.8288746671331861 87 evm.model.contig_769.1 no hits & (original description: no original description) 0.826252107756915 91 evm.model.contig_435.16 no hits & (original description: no original description) 0.8260234298024873 93 evm.model.contig_545.15 no hits & (original description: no original description) 0.8217961799269762 94 evm.model.contig_458.11 (at1g33270 : 99.4) Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Patatin (InterPro:IPR002641); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description) 0.8195774251371931 100