Sequence Description Alias PCC hrr evm.model.contig_2284.12 no hits & (original description: no original description) 0.9305185220966689 18 evm.model.contig_554.7 (at3g12150 : 159.0) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description) 0.9280545495315102 24 evm.model.contig_537.2 no hits & (original description: no original description) 0.9267507094148033 17 evm.model.contig_2051.36 no hits & (original description: no original description) 0.9264339689993295 4 evm.model.contig_532.1 (at2g27580 : 94.4) A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1). & (q9llx1|isap1_orysa : 82.0) Multiple stress-responsive zinc-finger protein ISAP1 (Stress-associated protein 1) (OsISAP1) - Oryza sativa (Rice) & (reliability: 171.8) & (original description: no original description) 0.9217429897553426 29 evm.model.contig_747.3 no hits & (original description: no original description) 0.9207645112971451 23 evm.model.contig_4433.3 no hits & (original description: no original description) 0.918657719526409 62 evm.model.contig_461.6 (original description: no original description) 0.9182171187689758 13 evm.model.contig_2173.15 no hits & (original description: no original description) 0.9179143946407518 9 evm.model.contig_508.4 no hits & (original description: no original description) 0.9177418777151547 23 evm.model.contig_3392.5 (at1g26370 : 321.0) RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 9899 Blast hits to 9180 proteins in 1561 species: Archae - 2; Bacteria - 3369; Metazoa - 2309; Fungi - 1230; Plants - 848; Viruses - 465; Other Eukaryotes - 1676 (source: NCBI BLink). & (reliability: 626.0) & (original description: no original description) 0.9157678264270376 11 evm.model.contig_4514.3 no hits & (original description: no original description) 0.9085730316945231 27 evm.model.contig_2404.8 no hits & (original description: no original description) 0.9056544129835584 13 evm.model.contig_2491.1 no hits & (original description: no original description) 0.9053155448057981 44 evm.model.contig_105.1 (at2g22730 : 98.2) Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G65687.1); Has 17716 Blast hits to 17664 proteins in 2057 species: Archae - 323; Bacteria - 13331; Metazoa - 891; Fungi - 1841; Plants - 194; Viruses - 0; Other Eukaryotes - 1136 (source: NCBI BLink). & (reliability: 196.4) & (original description: no original description) 0.9043395770375804 50 evm.model.contig_2032.13 (at5g24840 : 177.0) tRNA (guanine-N-7) methyltransferase; FUNCTIONS IN: tRNA (guanine-N7-)-methyltransferase activity; INVOLVED IN: acetate biosynthetic process from carbon monoxide, methanol oxidation, tRNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N-7) methyltransferase (InterPro:IPR003358); BEST Arabidopsis thaliana protein match is: tRNA (guanine-N-7) methyltransferase (TAIR:AT5G17660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description) 0.902455662463992 16 evm.model.contig_2301.3 (at5g16040 : 109.0) Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G02510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 218.0) & (original description: no original description) 0.9023018506517817 17 evm.model.contig_2032.29 (at1g78620 : 146.0) Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description) 0.9014614327292175 26 evm.model.contig_2400.2 no hits & (original description: no original description) 0.901052085245805 19 evm.model.contig_3408.1 no hits & (original description: no original description) 0.9003238916776872 23 evm.model.contig_720.2 no hits & (original description: no original description) 0.900290214171075 46 evm.model.contig_3624.5 no hits & (original description: no original description) 0.8955435406426918 22 evm.model.contig_3557.3 no hits & (original description: no original description) 0.8939475643426116 92 evm.model.contig_4572.1 (at2g32400 : 97.8) Glr5; glutamate receptor 5 (GLR5); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.4 (TAIR:AT1G05200.2); Has 6965 Blast hits to 6802 proteins in 627 species: Archae - 64; Bacteria - 977; Metazoa - 4763; Fungi - 0; Plants - 634; Viruses - 0; Other Eukaryotes - 527 (source: NCBI BLink). & (q7xp59|glr31_orysa : 81.6) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 195.6) & (original description: no original description) 0.8896540218553968 99 evm.model.contig_3423.37 (at3g27530 : 100.0) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein.; golgin candidate 6 (GC6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, Golgi vesicle transport, vesicle fusion with Golgi apparatus; LOCATED IN: cytosol, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uso1/p115 like vesicle tethering protein, C-terminal (InterPro:IPR006955), Armadillo-type fold (InterPro:IPR016024), Uso1/p115 like vesicle tethering protein, head region (InterPro:IPR006953); Has 8674 Blast hits to 6651 proteins in 794 species: Archae - 167; Bacteria - 1154; Metazoa - 4083; Fungi - 784; Plants - 382; Viruses - 31; Other Eukaryotes - 2073 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description) 0.8877408311231412 92 evm.model.contig_606.9 no hits & (original description: no original description) 0.887461437738584 28 evm.model.contig_3494.4 no hits & (original description: no original description) 0.8860566852238183 58 evm.model.contig_175.1 no hits & (original description: no original description) 0.8857982978317882 29 evm.model.contig_2446.2 no hits & (original description: no original description) 0.885759381148021 43 evm.model.contig_2358.2 (at3g62600 : 100.0) J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity.; ATERDJ3B; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, PAMP-induced immunity; LOCATED IN: plasma membrane, endoplasmic reticulum lumen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G08910.1); Has 27934 Blast hits to 27869 proteins in 3473 species: Archae - 187; Bacteria - 10337; Metazoa - 4624; Fungi - 2578; Plants - 2760; Viruses - 17; Other Eukaryotes - 7431 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description) 0.8854329897696247 85 evm.model.contig_4448.4 no hits & (original description: no original description) 0.8851003140230114 72 evm.model.contig_3689.1 (at1g79900 : 118.0) encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol; BAC2; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G46800.1); Has 25782 Blast hits to 14100 proteins in 457 species: Archae - 0; Bacteria - 6; Metazoa - 10775; Fungi - 7497; Plants - 4679; Viruses - 6; Other Eukaryotes - 2819 (source: NCBI BLink). & (reliability: 236.0) & (original description: no original description) 0.882908359379515 81 evm.model.contig_2272.4 (at3g13550 : 140.0) Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.; FUSCA 9 (FUS9); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 29 (TAIR:AT2G16740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description) 0.8828024123651916 34 evm.model.contig_2246.3 no hits & (original description: no original description) 0.8815808104630645 35 evm.model.contig_465.7 (at5g52580 : 139.0) RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195), Protein of unknown function DUF3548 (InterPro:IPR021935); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G27100.2). & (reliability: 278.0) & (original description: no original description) 0.8794275352972079 87 evm.model.contig_4407.12 no hits & (original description: no original description) 0.8776502924998594 39 evm.model.contig_4483.2 no hits & (original description: no original description) 0.8759131326166867 42 evm.model.contig_3494.3 no hits & (original description: no original description) 0.8753690838682615 43 evm.model.contig_4405.5 no hits & (original description: no original description) 0.8690445183291896 69 evm.model.contig_2015.25 (at1g07040 : 186.0) unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description) 0.868349481706193 50 evm.model.contig_2157.14 (at2g45330 : 96.7) embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation, embryo development ending in seed dormancy; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: RNA 2'-phosphotransferase, Tpt1 / KptA family (TAIR:AT5G23600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 193.4) & (original description: no original description) 0.8677628604043508 90 evm.model.contig_3407.15 no hits & (original description: no original description) 0.8677166856901859 52 evm.model.contig_2096.13 no hits & (original description: no original description) 0.8672227440070774 67 evm.model.contig_2622.7 no hits & (original description: no original description) 0.8646479794331332 55 evm.model.contig_458.3 (at3g49180 : 90.9) ROOT INITIATION DEFECTIVE 3 (RID3); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 42486 Blast hits to 21489 proteins in 714 species: Archae - 48; Bacteria - 7251; Metazoa - 15456; Fungi - 9258; Plants - 4698; Viruses - 0; Other Eukaryotes - 5775 (source: NCBI BLink). & (reliability: 181.8) & (original description: no original description) 0.8643829511291388 57 evm.model.contig_3469.1 no hits & (original description: no original description) 0.8632715268714162 70 evm.model.contig_507.2 no hits & (original description: no original description) 0.8629103470486811 59 evm.model.contig_2024.13 no hits & (original description: no original description) 0.8592422769627578 62 evm.model.contig_650.2 (at2g38560 : 135.0) Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.; transcript elongation factor IIS (TFIIS); CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor, IIS (InterPro:IPR016492), Transcription elongation factor, TFIIS (InterPro:IPR006289), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1858 Blast hits to 1830 proteins in 294 species: Archae - 58; Bacteria - 2; Metazoa - 702; Fungi - 370; Plants - 279; Viruses - 52; Other Eukaryotes - 395 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description) 0.8570458737022503 65 evm.model.contig_514.1 (at1g53400 : 88.2) Ubiquitin domain-containing protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin domain-containing protein (TAIR:AT5G45740.1); Has 319 Blast hits to 318 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 63; Plants - 89; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). & (reliability: 176.4) & (original description: no original description) 0.8563506852541579 68 evm.model.contig_3502.2 no hits & (original description: no original description) 0.8555944048475151 71 evm.model.contig_4440.3 (q7x7l3|elp3_orysa : 778.0) Probable histone acetyltransferase ELP3 (EC 2.3.1.48) (Elongator component 3) (Elongation protein 3) - Oryza sativa (Rice) & (at5g50320 : 767.0) A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1ñELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Two lines with RNAi constructs directed against HAG3 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.; ELONGATA 3 (ELO3); CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Histone acetyltransferase ELP3 (InterPro:IPR005910), Radical SAM (InterPro:IPR007197), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1534.0) & (original description: no original description) 0.8555649170417621 72 evm.model.contig_3486.7 no hits & (original description: no original description) 0.8495368017835947 80 evm.model.contig_2494.14 no hits & (original description: no original description) 0.8476023239748575 82 evm.model.contig_3395.1 no hits & (original description: no original description) 0.8475221278059488 83 evm.model.contig_614.3 no hits & (original description: no original description) 0.8454288943248243 86 evm.model.contig_2173.5 no hits & (original description: no original description) 0.8409675370020087 94 evm.model.contig_29.1 no hits & (original description: no original description) 0.8402646037567125 99 evm.model.contig_2281.12 no hits & (original description: no original description) 0.8392519629665269 97 evm.model.contig_2025.65 no hits & (original description: no original description) 0.8391692671597537 98