Sequence Description Alias PCC hrr evm.model.contig_2092.5 no hits & (original description: no original description) 0.9531272612185719 1 evm.model.contig_2347.3 (at3g15460 : 210.0) Ribosomal RNA processing Brix domain protein; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT1G52930.1); Has 415 Blast hits to 413 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 66; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). & (reliability: 420.0) & (original description: no original description) 0.9403487701220219 13 evm.model.contig_2022.14 no hits & (original description: no original description) 0.9395967739453519 14 evm.model.contig_2286.2 no hits & (original description: no original description) 0.9384965749091642 5 evm.model.contig_467.6 no hits & (original description: no original description) 0.9314624515142899 65 evm.model.contig_2274.4 no hits & (original description: no original description) 0.927855029823299 10 evm.model.contig_3409.1 no hits & (original description: no original description) 0.9265598250701514 43 evm.model.contig_2056.6 no hits & (original description: no original description) 0.9258703501663407 56 evm.model.contig_455.5 (q9fns4|mbb1_chlre : 103.0) PsbB mRNA maturation factor Mbb1, chloroplast precursor - Chlamydomonas reinhardtii & (at3g17040 : 87.8) It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.; high chlorophyll fluorescent 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, RNA processing, regulation of translation; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1). & (reliability: 175.6) & (original description: no original description) 0.9248007270403792 31 evm.model.contig_2298.3 no hits & (original description: no original description) 0.9190061629711034 10 evm.model.contig_2020.23 no hits & (original description: no original description) 0.9185553202304169 87 evm.model.contig_2068.22 no hits & (original description: no original description) 0.914390774932962 26 evm.model.contig_3451.12 (at4g37880 : 245.0) LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G22690.2); Has 833 Blast hits to 829 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 364; Fungi - 234; Plants - 138; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). & (reliability: 490.0) & (original description: no original description) 0.912073419916205 15 evm.model.contig_2142.6 no hits & (original description: no original description) 0.9115609963148484 36 evm.model.contig_4424.7 no hits & (original description: no original description) 0.9109466429403473 59 evm.model.contig_2104.6 (at5g19150 : 181.0) pfkB-like carbohydrate kinase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, carbohydrate kinase-related (InterPro:IPR000631); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 362.0) & (original description: no original description) 0.9105134899726213 19 evm.model.contig_623.4 no hits & (original description: no original description) 0.9098422351196289 71 evm.model.contig_3405.2 no hits & (original description: no original description) 0.9083335135721992 97 evm.model.contig_4456.20 (at4g35410 : 171.0) Clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: associated protein 19 (TAIR:AT2G17380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o50016|ap2s1_maize : 119.0) AP-2 complex subunit sigma-1 (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin assembly protein 2 small chain) - Zea mays (Maize) & (reliability: 342.0) & (original description: no original description) 0.9078890380435694 22 evm.model.contig_2031.16 (at1g18070 : 402.0) Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3). & (q41803|ef1a_maize : 270.0) Elongation factor 1-alpha (EF-1-alpha) - Zea mays (Maize) & (reliability: 804.0) & (original description: no original description) 0.9077680716487658 23 evm.model.contig_2494.34 no hits & (original description: no original description) 0.9076516084985737 78 evm.model.contig_2157.4 no hits & (original description: no original description) 0.9073244192262795 65 evm.model.contig_719.2 no hits & (original description: no original description) 0.9060585649695968 27 evm.model.contig_2112.5 no hits & (original description: no original description) 0.906046457203908 28 evm.model.contig_3468.7 no hits & (original description: no original description) 0.9047361977532002 30 evm.model.contig_503.2 (at3g13235 : 204.0) ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase aspartic (InterPro:IPR021109), Ubiquitin subgroup (InterPro:IPR019956), Peptidase aspartic, eukaryotic predicted (InterPro:IPR019103), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060). & (reliability: 408.0) & (original description: no original description) 0.903257582912749 45 evm.model.contig_2298.2 no hits & (original description: no original description) 0.9011101303118397 48 evm.model.contig_4555.1 no hits & (original description: no original description) 0.8998263867147449 72 evm.model.contig_4492.1 (at4g08550 : 107.0) electron carriers;protein disulfide oxidoreductases; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: glutaredoxin-related (TAIR:AT3G11920.1); Has 5684 Blast hits to 4425 proteins in 725 species: Archae - 19; Bacteria - 1130; Metazoa - 1053; Fungi - 285; Plants - 562; Viruses - 105; Other Eukaryotes - 2530 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description) 0.8982712509849616 53 evm.model.contig_3401.8 no hits & (original description: no original description) 0.8981026648411535 70 evm.model.contig_3423.20 no hits & (original description: no original description) 0.8980922806031122 62 evm.model.contig_455.1 no hits & (original description: no original description) 0.8980864104648163 41 evm.model.contig_2015.8 (at4g38890 : 95.9) FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink). & (reliability: 191.8) & (original description: no original description) 0.8971292294278985 57 evm.model.contig_2500.5 no hits & (original description: no original description) 0.896797774221503 49 evm.model.contig_2347.5 no hits & (original description: no original description) 0.8952865352075262 68 evm.model.contig_2083.7 no hits & (original description: no original description) 0.8931050581892666 84 evm.model.contig_2504.3 no hits & (original description: no original description) 0.8917738643886929 89 evm.model.contig_2064.7 no hits & (original description: no original description) 0.8905334263505766 58 evm.model.contig_542.8 (at5g08415 : 384.0) Radical SAM superfamily protein; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, lipoic acid synthase activity, iron-sulfur cluster binding, lipoate synthase activity, catalytic activity; INVOLVED IN: lipoic acid biosynthetic process, lipoate biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Lipoate synthase (InterPro:IPR003698), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 768.0) & (original description: no original description) 0.8897565836592 59 evm.model.contig_3413.5 no hits & (original description: no original description) 0.8896241237676606 60 evm.model.contig_481.15 (at1g71140 : 172.0) MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15150.1); Has 10143 Blast hits to 10059 proteins in 1990 species: Archae - 227; Bacteria - 7201; Metazoa - 146; Fungi - 330; Plants - 1347; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description) 0.8870863035805415 65 evm.model.contig_2081.4 (at5g62050 : 122.0) essential factor for protein sorting and assembly into membranes; homolog of yeast oxidase assembly 1 (OXA1) (OXA1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into mitochondrial inner membrane, protein complex assembly; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Membrane insertion protein, OxaA/YidC (InterPro:IPR001708), Membrane insertion protein, OxaA/YidC, core (InterPro:IPR020001); BEST Arabidopsis thaliana protein match is: inner membrane protein OXA1-like (TAIR:AT2G46470.1); Has 6982 Blast hits to 6979 proteins in 2374 species: Archae - 0; Bacteria - 4991; Metazoa - 235; Fungi - 246; Plants - 190; Viruses - 0; Other Eukaryotes - 1320 (source: NCBI BLink). & (reliability: 244.0) & (original description: no original description) 0.8865278612615423 66 evm.model.contig_480.1 (original description: no original description) 0.8858881334611397 92 evm.model.contig_623.5 no hits & (original description: no original description) 0.8857795006632321 99 evm.model.contig_2098.14 no hits & (original description: no original description) 0.8855510854389722 69 evm.model.contig_2120.1 no hits & (original description: no original description) 0.8836633259404695 81 evm.model.contig_683.3 no hits & (original description: no original description) 0.8832560175014322 76 evm.model.contig_4432.12 (at3g16565 : 155.0) alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding; FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, alanine-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: alanyl-tRNA aminoacylation, tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc, core domain (InterPro:IPR018165); BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase (TAIR:AT1G50200.1); Has 8903 Blast hits to 8903 proteins in 2729 species: Archae - 421; Bacteria - 5979; Metazoa - 328; Fungi - 222; Plants - 105; Viruses - 0; Other Eukaryotes - 1848 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description) 0.8816978747715303 77 evm.model.contig_2300.6 no hits & (original description: no original description) 0.881505218985338 78 evm.model.contig_2157.1 no hits & (original description: no original description) 0.8811028628359341 80 evm.model.contig_2096.17 (at2g42160 : 83.2) BRAP2 RING ZnF UBP domain-containing protein 1 (BRIZ1); FUNCTIONS IN: catalytic activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCA1-associated 2 (InterPro:IPR011422), Zinc finger, UBP-type (InterPro:IPR001607), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G26000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description) 0.880698803982339 84 evm.model.contig_2008.4 no hits & (original description: no original description) 0.8798746154872694 85 evm.model.contig_2139.2 no hits & (original description: no original description) 0.8797785155428328 84 evm.model.contig_2098.9 (at3g62270 : 130.0) HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT2G47160.1); Has 2572 Blast hits to 1412 proteins in 199 species: Archae - 0; Bacteria - 14; Metazoa - 1904; Fungi - 316; Plants - 231; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink). & (reliability: 260.0) & (original description: no original description) 0.879751667531935 85 evm.model.contig_2143.3 no hits & (original description: no original description) 0.8785833975030843 88 evm.model.contig_618.1 no hits & (original description: no original description) 0.8784992565375656 89 evm.model.contig_516.8 (at2g47420 : 348.0) Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink). & (reliability: 696.0) & (original description: no original description) 0.8767116933377894 95 evm.model.contig_463.4 (at1g01910 : 218.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: anion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description) 0.8745282669515209 100