Sequence Description Alias PCC hrr evm.model.contig_3450.2 no hits & (original description: no original description) 0.9785574583263806 2 evm.model.contig_4432.23 no hits & (original description: no original description) 0.9744115305638988 2 evm.model.contig_2052.8 (at5g35170 : 156.0) adenylate kinase family protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Domain of unknown function DUF1995 (InterPro:IPR018962), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenosine monophosphate kinase (TAIR:AT5G47840.1); Has 15140 Blast hits to 14955 proteins in 5116 species: Archae - 100; Bacteria - 10012; Metazoa - 1330; Fungi - 481; Plants - 477; Viruses - 0; Other Eukaryotes - 2740 (source: NCBI BLink). & (p43188|kadc_maize : 134.0) Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP transphosphorylase) - Zea mays (Maize) & (reliability: 312.0) & (original description: no original description) 0.972471477924094 3 evm.model.contig_496.8 (at4g00550 : 344.0) encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.; digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6dw74|dgdg1_lotja : 342.0) Digalactosyldiacylglycerol synthase 1, chloroplast precursor (EC 2.4.1.241) - Lotus japonicus & (reliability: 688.0) & (original description: no original description) 0.970809740079382 4 evm.model.contig_479.20 (o22506|glna2_dauca : 436.0) Glutamine synthetase, chloroplast precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (GS2) - Daucus carota (Carrot) & (at5g35630 : 426.0) chloroplastic glutamine synthetase; glutamine synthetase 2 (GS2); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthase clone F11 (TAIR:AT1G66200.1); Has 8236 Blast hits to 8234 proteins in 2572 species: Archae - 144; Bacteria - 3324; Metazoa - 415; Fungi - 259; Plants - 1746; Viruses - 3; Other Eukaryotes - 2345 (source: NCBI BLink). & (reliability: 852.0) & (original description: no original description) 0.9674762156406209 6 evm.model.contig_3445.9 (at5g16810 : 97.8) Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Protein kinase-like domain (InterPro:IPR011009); Has 87 Blast hits to 87 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 19; Plants - 57; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). & (reliability: 195.6) & (original description: no original description) 0.9672434045888219 6 evm.model.contig_4438.9 no hits & (original description: no original description) 0.9649975895364408 7 evm.model.contig_4410.9 no hits & (original description: no original description) 0.9639573499022858 8 evm.model.contig_2075.4 (p23400|trxm_chlre : 102.0) Thioredoxin M-type, chloroplast precursor (TRX-M) (Thioredoxin CH2) - Chlamydomonas reinhardtii & (at1g50320 : 92.8) encodes a prokaryotic thioredoxin; thioredoxin X (THX); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 20779 Blast hits to 19654 proteins in 2968 species: Archae - 276; Bacteria - 11383; Metazoa - 2412; Fungi - 1075; Plants - 1697; Viruses - 7; Other Eukaryotes - 3929 (source: NCBI BLink). & (reliability: 185.6) & (original description: no original description) 0.9633403986466245 9 evm.model.contig_2132.4 no hits & (original description: no original description) 0.9625115472121927 10 evm.model.contig_2023.2 (at4g00370 : 417.0) Encodes an inorganic phosphate transporter (PHT4;4).; ANTR2; FUNCTIONS IN: organic anion transmembrane transporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 4;1 (TAIR:AT2G29650.1); Has 37886 Blast hits to 37799 proteins in 2473 species: Archae - 506; Bacteria - 30466; Metazoa - 2514; Fungi - 1637; Plants - 427; Viruses - 0; Other Eukaryotes - 2336 (source: NCBI BLink). & (reliability: 834.0) & (original description: no original description) 0.9619868879568004 11 evm.model.contig_3422.6 no hits & (original description: no original description) 0.9593623804626843 12 evm.model.contig_2293.10 no hits & (original description: no original description) 0.9569797794980179 13 evm.model.contig_2656.2 no hits & (original description: no original description) 0.9557706272677695 14 evm.model.contig_662.2 (at3g01090 : 169.0) encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase; SNF1 kinase homolog 10 (KIN10); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q02723|rkin1_secce : 162.0) Carbon catabolite derepressing protein kinase (EC 2.7.11.1) - Secale cereale (Rye) & (reliability: 332.0) & (original description: no original description) 0.9552681948510479 15 evm.model.contig_2116.3 no hits & (original description: no original description) 0.9541079370039233 16 evm.model.contig_2190.3 (at5g19680 : 183.0) Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G22320.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 366.0) & (original description: no original description) 0.953483772454272 17 evm.model.contig_2102.19 no hits & (original description: no original description) 0.9522965570430502 18 evm.model.contig_2062.4 no hits & (original description: no original description) 0.9510264692961872 19 evm.model.contig_2396.1 no hits & (original description: no original description) 0.9506194376697278 20 evm.model.contig_2259.5 no hits & (original description: no original description) 0.9505587123676348 21 evm.model.contig_3431.7 no hits & (original description: no original description) 0.9488056052796058 22 evm.model.contig_3387.8 no hits & (original description: no original description) 0.9481125862729297 23 evm.model.contig_3495.2 (at1g09340 : 335.0) Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.; chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink). & (reliability: 670.0) & (original description: no original description) 0.9474225061669317 24 evm.model.contig_2114.12 no hits & (original description: no original description) 0.9465789116023121 25 evm.model.contig_468.10 (at1g50430 : 256.0) Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype.; DWARF 5 (DWF5); FUNCTIONS IN: sterol delta7 reductase activity; INVOLVED IN: sterol biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: integral to endoplasmic reticulum membrane, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol reductase, conserved site (InterPro:IPR018083), Ergosterol biosynthesis ERG4/ERG24 (InterPro:IPR001171); BEST Arabidopsis thaliana protein match is: Ergosterol biosynthesis ERG4/ERG24 family (TAIR:AT3G52940.1); Has 974 Blast hits to 971 proteins in 205 species: Archae - 0; Bacteria - 51; Metazoa - 266; Fungi - 402; Plants - 150; Viruses - 3; Other Eukaryotes - 102 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description) 0.9462582600244933 26 evm.model.contig_2271.4 no hits & (original description: no original description) 0.9462142630502542 27 evm.model.contig_2666.1 (at4g16580 : 179.0) Protein phosphatase 2C family protein; FUNCTIONS IN: phosphoprotein phosphatase activity, catalytic activity; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Sporulation stage II, protein E C-terminal (InterPro:IPR010822); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G66720.1); Has 838 Blast hits to 828 proteins in 210 species: Archae - 0; Bacteria - 2; Metazoa - 184; Fungi - 235; Plants - 232; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). & (reliability: 358.0) & (original description: no original description) 0.9458645759898713 28 evm.model.contig_2016.2 no hits & (original description: no original description) 0.9440032383924085 29 evm.model.contig_3495.1 no hits & (original description: no original description) 0.9439820359112732 30 evm.model.contig_469.2 no hits & (original description: no original description) 0.9400833942500364 31 evm.model.contig_532.10 (at2g32480 : 195.0) Metalloprotease essential for plastid development. Located in the inner membrane of chloroplasts.; ARABIDOPSIS SERIN PROTEASE (ARASP); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis, chloroplast organization; LOCATED IN: chloroplast, plastid, chloroplast inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: Peptidase M50 family protein (TAIR:AT1G05140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 390.0) & (original description: no original description) 0.9400516885762251 32 evm.model.contig_445.1 (at1g49580 : 130.0) Calcium-dependent protein kinase (CDPK) family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G19100.1); Has 118201 Blast hits to 116445 proteins in 3162 species: Archae - 162; Bacteria - 14319; Metazoa - 43815; Fungi - 12645; Plants - 25821; Viruses - 463; Other Eukaryotes - 20976 (source: NCBI BLink). & (p53681|crk_dauca : 129.0) CDPK-related protein kinase (EC 2.7.11.1) (PK421) - Daucus carota (Carrot) & (reliability: 260.0) & (original description: no original description) 0.9394724838827856 33 evm.model.contig_2293.14 no hits & (original description: no original description) 0.9366917140391109 34 evm.model.contig_2354.2 (p51061|capp2_soybn : 700.0) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase) (PEPC) - Glycine max (Soybean) & (at1g53310 : 694.0) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.; phosphoenolpyruvate carboxylase 1 (PPC1); FUNCTIONS IN: protein binding, phosphoenolpyruvate carboxylase activity; INVOLVED IN: response to salt stress, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 3 (TAIR:AT3G14940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1388.0) & (original description: no original description) 0.9363355892308874 35 evm.model.contig_2386.3 (q5n941|dmi1_orysa : 133.0) Probable ion channel DMI1, chloroplast precursor - Oryza sativa (Rice) & (at5g49960 : 116.0) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description) 0.9331732196897655 36 evm.model.contig_2279.6 no hits & (original description: no original description) 0.9327259367438082 37 evm.model.contig_4594.1 no hits & (original description: no original description) 0.9326715985140691 38 evm.model.contig_3433.5 (at1g60550 : 308.0) enoyl-CoA hydratase/isomerase D (ECHID); FUNCTIONS IN: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity, catalytic activity; INVOLVED IN: vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Naphthoate synthase (InterPro:IPR010198), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: enoyl-CoA hydratase/isomerase A (TAIR:AT4G16210.1); Has 35699 Blast hits to 35688 proteins in 2278 species: Archae - 489; Bacteria - 23573; Metazoa - 1539; Fungi - 813; Plants - 522; Viruses - 0; Other Eukaryotes - 8763 (source: NCBI BLink). & (reliability: 616.0) & (original description: no original description) 0.9307121017078271 39 evm.model.contig_2347.10 no hits & (original description: no original description) 0.9302424746892766 40 evm.model.contig_2271.3 no hits & (original description: no original description) 0.9282751274911657 41 evm.model.contig_510.16 (at5g24940 : 153.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G10740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description) 0.9261097600664595 42 evm.model.contig_3420.3 no hits & (original description: no original description) 0.9258140813538022 47 evm.model.contig_734.2 no hits & (original description: no original description) 0.9241602063785403 44 evm.model.contig_4413.8 no hits & (original description: no original description) 0.924129240411795 45 evm.model.contig_2656.1 (gnl|cdd|68872 : 105.0) no description available & (p16016|cahc_spiol : 84.7) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) - Spinacia oleracea (Spinach) & (at5g14740 : 81.3) Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.; carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 5023 Blast hits to 5008 proteins in 1512 species: Archae - 36; Bacteria - 3889; Metazoa - 60; Fungi - 203; Plants - 352; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink). & (reliability: 162.6) & (original description: no original description) 0.9240433122953452 46 evm.model.contig_469.1 no hits & (original description: no original description) 0.9228590358984508 48 evm.model.contig_2056.12 no hits & (original description: no original description) 0.9191721247582012 48 evm.model.contig_2083.4 (at3g21300 : 137.0) RNA methyltransferase family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), 23S rRNA methyltransferase/RumA (InterPro:IPR001566), (Uracil-5)-methyltransferase (InterPro:IPR010280), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G28450.2); Has 10349 Blast hits to 9632 proteins in 2576 species: Archae - 226; Bacteria - 8529; Metazoa - 196; Fungi - 218; Plants - 136; Viruses - 7; Other Eukaryotes - 1037 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description) 0.9185093158440183 58 evm.model.contig_2142.7 (at4g32360 : 305.0) Pyridine nucleotide-disulphide oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Adrenodoxin reductase (InterPro:IPR000759), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NADH-dependent glutamate synthase 1 (TAIR:AT5G53460.3); Has 9342 Blast hits to 9327 proteins in 2028 species: Archae - 136; Bacteria - 6683; Metazoa - 218; Fungi - 274; Plants - 105; Viruses - 0; Other Eukaryotes - 1926 (source: NCBI BLink). & (reliability: 610.0) & (original description: no original description) 0.9180578137420603 50 evm.model.contig_3587.4 (at2g43360 : 406.0) Catalyzes the conversion of dethiobiotin to biotin.; BIOTIN AUXOTROPH 2 (BIO2); CONTAINS InterPro DOMAIN/s: Biotin/thiamin synthesis-associated protein (InterPro:IPR010722), Aldolase-type TIM barrel (InterPro:IPR013785), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197), Biotin synthase (InterPro:IPR002684); Has 5366 Blast hits to 5366 proteins in 2012 species: Archae - 191; Bacteria - 4453; Metazoa - 6; Fungi - 120; Plants - 75; Viruses - 0; Other Eukaryotes - 521 (source: NCBI BLink). & (reliability: 812.0) & (original description: no original description) 0.9177256786516291 51 evm.model.contig_2098.8 no hits & (original description: no original description) 0.9176468293944239 52 evm.model.contig_3442.1 no hits & (original description: no original description) 0.9171241546060942 53 evm.model.contig_4487.11 (at4g17100 : 219.0) EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998). & (reliability: 438.0) & (original description: no original description) 0.9167664994307905 97 evm.model.contig_3631.1 no hits & (original description: no original description) 0.9158620325628233 97 evm.model.contig_3488.10 no hits & (original description: no original description) 0.9157466386128233 56 evm.model.contig_2086.1 (at5g13410 : 221.0) FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G19830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 442.0) & (original description: no original description) 0.9156648020500983 57 evm.model.contig_2219.4 (at3g09150 : 112.0) Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.; ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 224.0) & (original description: no original description) 0.9125384545031419 58 evm.model.contig_4441.1 no hits & (original description: no original description) 0.9110025472286871 59 evm.model.contig_2502.19 (at1g74470 : 564.0) Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate.; Pyridine nucleotide-disulphide oxidoreductase family protein; FUNCTIONS IN: geranylgeranyl reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Geranylgeranyl reductase (InterPro:IPR010253), Geranylgeranyl reductase, plant/cyanobacteria (InterPro:IPR011774), Geranylgeranyl reductase, plant/prokaryotic (InterPro:IPR011777); Has 4540 Blast hits to 4539 proteins in 1185 species: Archae - 562; Bacteria - 2644; Metazoa - 5; Fungi - 25; Plants - 302; Viruses - 0; Other Eukaryotes - 1002 (source: NCBI BLink). & (reliability: 1128.0) & (original description: no original description) 0.9096570174697796 60 evm.model.contig_3475.1 no hits & (original description: no original description) 0.9092696021005205 61 evm.model.contig_3413.2 (at4g37680 : 119.0) heptahelical transmembrane protein HHP4; heptahelical protein 4 (HHP4); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 5 (TAIR:AT4G38320.1). & (reliability: 238.0) & (original description: no original description) 0.9087871788599355 76 evm.model.contig_3699.5 no hits & (original description: no original description) 0.9069332868485271 63 evm.model.contig_4488.2 no hits & (original description: no original description) 0.9066733380131844 64 evm.model.contig_3462.3 no hits & (original description: no original description) 0.9061674619104476 65 evm.model.contig_2022.9 no hits & (original description: no original description) 0.9054163427610069 81 evm.model.contig_4456.12 no hits & (original description: no original description) 0.9052176557245247 67 evm.model.contig_2062.19 (at3g24430 : 234.0) encodes a MRP-like protein with a nucleotide-binding domain.; HIGH-CHLOROPHYLL-FLUORESCENCE 101 (HCF101); FUNCTIONS IN: ATP binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mrp, conserved site (InterPro:IPR000808), Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376), Protein of unknown function DUF59 (InterPro:IPR002744), ATPase-like, ParA/MinD (InterPro:IPR019591); BEST Arabidopsis thaliana protein match is: IND1(iron-sulfur protein required for NADH dehydrogenase)-like (TAIR:AT4G19540.1); Has 16372 Blast hits to 16340 proteins in 2775 species: Archae - 600; Bacteria - 10162; Metazoa - 436; Fungi - 428; Plants - 202; Viruses - 0; Other Eukaryotes - 4544 (source: NCBI BLink). & (reliability: 468.0) & (original description: no original description) 0.9043067089685924 68 evm.model.contig_561.1 no hits & (original description: no original description) 0.9041883042065455 69 evm.model.contig_479.21 no hits & (original description: no original description) 0.9029773480560501 70 evm.model.contig_3486.4 (at3g19830 : 179.0) NTMC2T5.2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: N-terminal-transmembrane-C2 domain type 5.1 (TAIR:AT1G50260.1); Has 1308 Blast hits to 1143 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 350; Fungi - 235; Plants - 647; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). & (reliability: 358.0) & (original description: no original description) 0.9027439295101409 71 evm.model.contig_2059.1 (at3g63140 : 146.0) Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.; chloroplast stem-loop binding protein of 41 kDa (CSP41A); FUNCTIONS IN: mRNA binding, poly(U) RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast RNA binding (TAIR:AT1G09340.1); Has 1047 Blast hits to 1047 proteins in 372 species: Archae - 70; Bacteria - 649; Metazoa - 6; Fungi - 5; Plants - 106; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description) 0.9023408765154097 90 evm.model.contig_4591.1 no hits & (original description: no original description) 0.9017252826704373 88 evm.model.contig_3423.15 no hits & (original description: no original description) 0.901637571827663 90 evm.model.contig_477.14 no hits & (original description: no original description) 0.9009956932249852 75 evm.model.contig_2493.3 (p27523|cb23_horvu : 90.9) Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor (CAB) - Hordeum vulgare (Barley) & (at5g54270 : 87.4) Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).; light-harvesting chlorophyll B-binding protein 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description) 0.9000818806542712 88 evm.model.contig_4425.7 no hits & (original description: no original description) 0.8976025221710616 77 evm.model.contig_491.7 no hits & (original description: no original description) 0.8936534131979491 94 evm.model.contig_3388.8 (at3g11040 : 138.0) Glycosyl hydrolase family 85 ; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 85 (InterPro:IPR005201), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 85 (TAIR:AT5G05460.1); Has 486 Blast hits to 477 proteins in 213 species: Archae - 0; Bacteria - 256; Metazoa - 108; Fungi - 38; Plants - 49; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 276.0) & (original description: no original description) 0.8932178008851325 82 evm.model.contig_4456.11 (at5g61990 : 169.0) Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q76c99|rf1_orysa : 139.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 338.0) & (original description: no original description) 0.8930717710261149 83 evm.model.contig_4404.30 no hits & (original description: no original description) 0.8930219255498396 93 evm.model.contig_3468.1 (at5g11500 : 174.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532). & (reliability: 348.0) & (original description: no original description) 0.8921055958637636 86 evm.model.contig_3605.2 (at1g80380 : 219.0) encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.; P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. & (reliability: 438.0) & (original description: no original description) 0.8918792666492812 87 evm.model.contig_3490.1 (at3g14390 : 125.0) Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT5G11880.1); Has 13020 Blast hits to 12980 proteins in 2586 species: Archae - 150; Bacteria - 7800; Metazoa - 435; Fungi - 194; Plants - 400; Viruses - 27; Other Eukaryotes - 4014 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description) 0.8915829907250118 88 evm.model.contig_493.29 no hits & (original description: no original description) 0.8915572475391381 89 evm.model.contig_2031.20 (at3g14415 : 415.0) Aldolase-type TIM barrel family protein; FUNCTIONS IN: glycolate oxidase activity, oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G14420.2). & (p05414|gox_spiol : 413.0) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) - Spinacia oleracea (Spinach) & (reliability: 830.0) & (original description: no original description) 0.8913041749525651 90 evm.model.contig_2051.35 (p49362|gcspb_flapr : 1084.0) Glycine dehydrogenase [decarboxylating] B, mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase B) (Glycine cleavage system P-protein B) - Flaveria pringlei & (at2g26080 : 1070.0) glycine decarboxylase P-protein 2 (GLDP2); FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: oxidation reduction, glycine decarboxylation via glycine cleavage system, glycine metabolic process; LOCATED IN: mitochondrion, glycine cleavage complex, chloroplast, chloroplast envelope; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Glycine cleavage system P-protein-like (InterPro:IPR020581), Glycine cleavage system P-protein (InterPro:IPR003437), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine cleavage system P-protein, N-terminal (InterPro:IPR020580); BEST Arabidopsis thaliana protein match is: glycine decarboxylase P-protein 1 (TAIR:AT4G33010.1); Has 12461 Blast hits to 11458 proteins in 1938 species: Archae - 256; Bacteria - 5279; Metazoa - 139; Fungi - 214; Plants - 99; Viruses - 0; Other Eukaryotes - 6474 (source: NCBI BLink). & (reliability: 2140.0) & (original description: no original description) 0.8878525076423909 93 evm.model.contig_517.3 (at3g09580 : 247.0) FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2908 Blast hits to 2906 proteins in 704 species: Archae - 36; Bacteria - 1433; Metazoa - 261; Fungi - 51; Plants - 352; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink). & (reliability: 494.0) & (original description: no original description) 0.8874747967399416 94 evm.model.contig_852.1 no hits & (original description: no original description) 0.8868573981174499 95 evm.model.contig_4620.1 no hits & (original description: no original description) 0.8863787041983194 96 evm.model.contig_611.13 (at2g18390 : 213.0) Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.; TITAN 5 (TTN5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1B (TAIR:AT5G14670.1); Has 10006 Blast hits to 10000 proteins in 420 species: Archae - 13; Bacteria - 39; Metazoa - 4544; Fungi - 1627; Plants - 1505; Viruses - 3; Other Eukaryotes - 2275 (source: NCBI BLink). & (p49076|arf_maize : 139.0) ADP-ribosylation factor - Zea mays (Maize) & (reliability: 426.0) & (original description: no original description) 0.8849390766919929 97 evm.model.contig_2052.9 (at4g17740 : 175.0) Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9160 Blast hits to 9150 proteins in 1973 species: Archae - 0; Bacteria - 5658; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description) 0.884700580147361 98 evm.model.contig_4448.11 no hits & (original description: no original description) 0.884585616395941 99