Sequence Description Alias PCC hrr evm.model.contig_516.8 (at2g47420 : 348.0) Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink). & (reliability: 696.0) & (original description: no original description) 0.9328066436585154 2 evm.model.contig_2090.23 (at3g49660 : 297.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (p93107|pf20_chlre : 118.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 542.0) & (original description: no original description) 0.9260736983919158 4 evm.model.contig_3409.1 no hits & (original description: no original description) 0.920085480080071 59 evm.model.contig_4401.6 (at1g18260 : 92.8) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description) 0.9188011097377922 6 evm.model.contig_2251.5 no hits & (original description: no original description) 0.9186717709889152 5 evm.model.contig_618.3 (at5g51740 : 127.0) Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 6369 Blast hits to 6329 proteins in 1292 species: Archae - 10; Bacteria - 4324; Metazoa - 65; Fungi - 153; Plants - 45; Viruses - 0; Other Eukaryotes - 1772 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description) 0.9136307064055594 20 evm.model.contig_479.16 (at3g27870 : 338.0) ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G68710.1); Has 13753 Blast hits to 12595 proteins in 1702 species: Archae - 134; Bacteria - 4536; Metazoa - 3490; Fungi - 2070; Plants - 981; Viruses - 3; Other Eukaryotes - 2539 (source: NCBI BLink). & (reliability: 634.0) & (original description: no original description) 0.9111650617205668 75 evm.model.contig_2300.6 no hits & (original description: no original description) 0.9105277794232927 18 evm.model.contig_2270.1 (at5g24850 : 303.0) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.; cryptochrome 3 (CRY3); FUNCTIONS IN: FMN binding, DNA binding, DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome, DASH (InterPro:IPR014133), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: photolyase/blue-light receptor 2 (TAIR:AT2G47590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q651u1|cryd_orysa : 298.0) Cryptochrome DASH, chloroplast/mitochondrial precursor - Oryza sativa (Rice) & (reliability: 606.0) & (original description: no original description) 0.9065350907710719 9 evm.model.contig_4555.1 no hits & (original description: no original description) 0.9049671829065294 65 evm.model.contig_2015.8 (at4g38890 : 95.9) FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink). & (reliability: 191.8) & (original description: no original description) 0.9038553549889257 39 evm.model.contig_458.10 no hits & (original description: no original description) 0.9037919605327113 21 evm.model.contig_3397.3 no hits & (original description: no original description) 0.9022116538137948 49 evm.model.contig_3437.8 (at3g10660 : 136.0) predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%.; calmodulin-domain protein kinase cdpk isoform 2 (CPK2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium dependent protein kinase 1 (TAIR:AT5G04870.1); Has 145304 Blast hits to 132515 proteins in 4265 species: Archae - 224; Bacteria - 17128; Metazoa - 53382; Fungi - 18632; Plants - 28672; Viruses - 609; Other Eukaryotes - 26657 (source: NCBI BLink). & (p53681|crk_dauca : 133.0) CDPK-related protein kinase (EC 2.7.11.1) (PK421) - Daucus carota (Carrot) & (reliability: 268.0) & (original description: no original description) 0.900557540352769 15 evm.model.contig_517.6 (at3g59630 : 96.7) diphthamide synthesis DPH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Diphthamide synthesis, DPH1/DHP2 (InterPro:IPR002728), Diphthamide synthesis, DHP2 (InterPro:IPR010014); BEST Arabidopsis thaliana protein match is: diphthamide synthesis DPH2 family protein (TAIR:AT5G62030.1); Has 995 Blast hits to 948 proteins in 287 species: Archae - 127; Bacteria - 0; Metazoa - 243; Fungi - 308; Plants - 94; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 193.4) & (original description: no original description) 0.8950817657167349 25 evm.model.contig_503.2 (at3g13235 : 204.0) ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase aspartic (InterPro:IPR021109), Ubiquitin subgroup (InterPro:IPR019956), Peptidase aspartic, eukaryotic predicted (InterPro:IPR019103), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060). & (reliability: 408.0) & (original description: no original description) 0.8939936322067918 59 evm.model.contig_3606.2 (at2g38130 : 144.0) Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.; ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description) 0.8917300821730194 19 evm.model.contig_2286.2 no hits & (original description: no original description) 0.8880841157349785 94 evm.model.contig_2157.17 no hits & (original description: no original description) 0.8867308898520627 21 evm.model.contig_618.2 (at3g26560 : 1023.0) ATP-dependent RNA helicase, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Domain of unknown function DUF1605 (InterPro:IPR011709), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.2); Has 53052 Blast hits to 35825 proteins in 3176 species: Archae - 195; Bacteria - 13845; Metazoa - 17201; Fungi - 5520; Plants - 3365; Viruses - 1203; Other Eukaryotes - 11723 (source: NCBI BLink). & (reliability: 2046.0) & (original description: no original description) 0.8858337156192944 22 evm.model.contig_2020.24 no hits & (original description: no original description) 0.8856398526772117 74 evm.model.contig_3811.1 no hits & (original description: no original description) 0.8852533168579381 24 evm.model.contig_600.3 no hits & (original description: no original description) 0.8847450826699136 48 evm.model.contig_2157.1 no hits & (original description: no original description) 0.8838539890712315 31 evm.model.contig_2064.7 no hits & (original description: no original description) 0.881370904978035 71 evm.model.contig_719.2 no hits & (original description: no original description) 0.8813348597886852 51 evm.model.contig_2110.7 no hits & (original description: no original description) 0.880751840332608 30 evm.model.contig_2092.5 no hits & (original description: no original description) 0.8802935318495753 56 evm.model.contig_458.6 (at5g01230 : 276.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: FtsJ-like methyltransferase family protein (TAIR:AT4G25730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 552.0) & (original description: no original description) 0.8797785155428328 84 evm.model.contig_2096.23 (at2g13440 : 734.0) glucose-inhibited division family A protein; FUNCTIONS IN: FAD binding; INVOLVED IN: tRNA processing, tRNA wobble uridine modification; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-inhibited division protein A-related (InterPro:IPR002218), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Glucose-inhibited division protein A (InterPro:IPR004416), Glucose-inhibited division protein A-related, conserved site (InterPro:IPR020595); Has 12829 Blast hits to 12787 proteins in 2525 species: Archae - 2; Bacteria - 6632; Metazoa - 144; Fungi - 175; Plants - 52; Viruses - 0; Other Eukaryotes - 5824 (source: NCBI BLink). & (reliability: 1468.0) & (original description: no original description) 0.8773882859183628 36 evm.model.contig_3450.11 no hits & (original description: no original description) 0.8771617588533475 37 evm.model.contig_527.3 no hits & (original description: no original description) 0.8761843154157168 45 evm.model.contig_3451.12 (at4g37880 : 245.0) LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G22690.2); Has 833 Blast hits to 829 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 364; Fungi - 234; Plants - 138; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). & (reliability: 490.0) & (original description: no original description) 0.8757502729797948 74 evm.model.contig_469.9 no hits & (original description: no original description) 0.8754427812289486 53 evm.model.contig_3427.11 no hits & (original description: no original description) 0.8748914499031594 43 evm.model.contig_2341.1 (at1g75660 : 358.0) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.; 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). & (reliability: 716.0) & (original description: no original description) 0.8746348411774603 60 evm.model.contig_2448.1 no hits & (original description: no original description) 0.873726360020897 46 evm.model.contig_2343.2 (at2g04620 : 80.5) Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 161.0) & (original description: no original description) 0.8728946566896879 65 evm.model.contig_4515.4 no hits & (original description: no original description) 0.8724711483187717 48 evm.model.contig_3509.8 no hits & (original description: no original description) 0.8723501848425886 68 evm.model.contig_2038.1 (at4g02570 : 261.0) Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.; cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, conserved site (InterPro:IPR016157), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1). & (reliability: 522.0) & (original description: no original description) 0.8701433772962442 59 evm.model.contig_3464.3 (q6xz79|scrk1_maize : 122.0) Fructokinase-1 (EC 2.7.1.4) (ZmFRK1) - Zea mays (Maize) & (at1g66430 : 120.0) pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G51830.1); Has 20370 Blast hits to 20366 proteins in 2496 species: Archae - 409; Bacteria - 15079; Metazoa - 242; Fungi - 159; Plants - 598; Viruses - 0; Other Eukaryotes - 3883 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.8685718253624526 53 evm.model.contig_493.4 no hits & (original description: no original description) 0.8663907299200045 85 evm.model.contig_2104.6 (at5g19150 : 181.0) pfkB-like carbohydrate kinase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, carbohydrate kinase-related (InterPro:IPR000631); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 362.0) & (original description: no original description) 0.8663654193578862 84 evm.model.contig_4464.8 no hits & (original description: no original description) 0.8663326523449696 59 evm.model.contig_3425.9 no hits & (original description: no original description) 0.8658465987434153 60 evm.model.contig_604.4 no hits & (original description: no original description) 0.8633208131273344 98 evm.model.contig_2284.16 (at1g59760 : 812.0) RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink). & (reliability: 1624.0) & (original description: no original description) 0.860593431982902 70 evm.model.contig_4436.5 no hits & (original description: no original description) 0.8591476567798959 72 evm.model.contig_594.4 no hits & (original description: no original description) 0.8587412659872168 74 evm.model.contig_2081.4 (at5g62050 : 122.0) essential factor for protein sorting and assembly into membranes; homolog of yeast oxidase assembly 1 (OXA1) (OXA1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into mitochondrial inner membrane, protein complex assembly; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Membrane insertion protein, OxaA/YidC (InterPro:IPR001708), Membrane insertion protein, OxaA/YidC, core (InterPro:IPR020001); BEST Arabidopsis thaliana protein match is: inner membrane protein OXA1-like (TAIR:AT2G46470.1); Has 6982 Blast hits to 6979 proteins in 2374 species: Archae - 0; Bacteria - 4991; Metazoa - 235; Fungi - 246; Plants - 190; Viruses - 0; Other Eukaryotes - 1320 (source: NCBI BLink). & (reliability: 244.0) & (original description: no original description) 0.8587336929316634 75 evm.model.contig_2279.13 no hits & (original description: no original description) 0.8586887031783298 76 evm.model.contig_4425.4 (at2g18510 : 226.0) embryo defective 2444 (emb2444); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 66829 Blast hits to 41224 proteins in 1633 species: Archae - 50; Bacteria - 5635; Metazoa - 30219; Fungi - 10282; Plants - 12025; Viruses - 917; Other Eukaryotes - 7701 (source: NCBI BLink). & (gnl|cdd|68872 : 85.1) no description available & (reliability: 452.0) & (original description: no original description) 0.8581715052076627 77 evm.model.contig_4404.7 no hits & (original description: no original description) 0.8570742700930823 82 evm.model.contig_2146.8 (at1g02410 : 192.0) cytochrome c oxidase assembly protein CtaG / Cox11 family; FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533); Has 2749 Blast hits to 2749 proteins in 659 species: Archae - 0; Bacteria - 997; Metazoa - 98; Fungi - 130; Plants - 41; Viruses - 0; Other Eukaryotes - 1483 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description) 0.853787661512762 87 evm.model.contig_4456.4 no hits & (original description: no original description) 0.8530971472593005 98 evm.model.contig_2139.1 (at3g08720 : 201.0) Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.; Arabidopsis thaliana protein kinase 19 (ATPK19); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, C-terminal (InterPro:IPR017892), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: protein-serine kinase 1 (TAIR:AT3G08730.1); Has 133901 Blast hits to 131707 proteins in 4554 species: Archae - 204; Bacteria - 15943; Metazoa - 48718; Fungi - 13429; Plants - 32816; Viruses - 561; Other Eukaryotes - 22230 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 120.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 402.0) & (original description: no original description) 0.8513203807363994 91 evm.model.contig_3442.13 no hits & (original description: no original description) 0.8509499666011677 94 evm.model.contig_452.16 (at3g19210 : 335.0) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination.; homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1). & (q7g8y3|isw2_orysa : 184.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 670.0) & (original description: no original description) 0.8492513469893914 97 evm.model.contig_3606.3 no hits & (original description: no original description) 0.8492368543101538 98 evm.model.contig_3532.6 no hits & (original description: no original description) 0.8491912044593048 99