Sequence Description Alias PCC hrr evm.model.contig_2421.9 (at5g39710 : 153.0) EMBRYO DEFECTIVE 2745 (EMB2745); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 65335 Blast hits to 15466 proteins in 320 species: Archae - 6; Bacteria - 88; Metazoa - 1398; Fungi - 1479; Plants - 59659; Viruses - 0; Other Eukaryotes - 2705 (source: NCBI BLink). & (q76c99|rf1_orysa : 131.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 306.0) & (original description: no original description) 0.9468491433197856 2 evm.model.contig_3478.12 (at2g41140 : 114.0) Encodes CDPK-related kinase 1 (CRK1).; CDPK-related kinase 1 (CRK1); FUNCTIONS IN: calcium-dependent protein serine/threonine phosphatase activity, calmodulin-dependent protein kinase activity, kinase activity, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G56760.1); Has 116311 Blast hits to 114570 proteins in 3026 species: Archae - 154; Bacteria - 14640; Metazoa - 43033; Fungi - 12673; Plants - 24419; Viruses - 507; Other Eukaryotes - 20885 (source: NCBI BLink). & (p53681|crk_dauca : 111.0) CDPK-related protein kinase (EC 2.7.11.1) (PK421) - Daucus carota (Carrot) & (reliability: 228.0) & (original description: no original description) 0.937063872473458 3 evm.model.contig_4475.3 no hits & (original description: no original description) 0.9358072076564218 3 evm.model.contig_2619.1 no hits & (original description: no original description) 0.9203382096224658 4 evm.model.contig_2672.1 (at2g25170 : 447.0) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.; PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 397.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 892.0) & (original description: no original description) 0.9118087447284081 12 evm.model.contig_4447.4 (at2g20650 : 293.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G28370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 586.0) & (original description: no original description) 0.9048087358402988 8 evm.model.contig_4416.5 no hits & (original description: no original description) 0.9014957875226478 8 evm.model.contig_528.3 no hits & (original description: no original description) 0.9013181410944814 58 evm.model.contig_2272.6 no hits & (original description: no original description) 0.8983390118496862 17 evm.model.contig_2039.2 no hits & (original description: no original description) 0.8977705239963706 17 evm.model.contig_2149.9 no hits & (original description: no original description) 0.8922591549782224 15 evm.model.contig_4475.2 no hits & (original description: no original description) 0.8913725512902412 15 evm.model.contig_4407.1 no hits & (original description: no original description) 0.8906403827184143 30 evm.model.contig_4449.10 (at3g45780 : 97.1) Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.; phototropin 1 (PHOT1); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 8 processes; LOCATED IN: internal side of plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: phototropin 2 (TAIR:AT5G58140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 190.2) & (original description: no original description) 0.8800207160540201 49 evm.model.contig_623.8 no hits & (original description: no original description) 0.87861378059902 34 evm.model.contig_3613.2 no hits & (original description: no original description) 0.8730880955762914 16 evm.model.contig_3528.3 no hits & (original description: no original description) 0.8707796300797862 39 evm.model.contig_3402.8 (at5g20270 : 85.5) heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors; heptahelical transmembrane protein1 (HHP1); FUNCTIONS IN: receptor activity; INVOLVED IN: response to salt stress, response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical transmembrane protein2 (TAIR:AT4G30850.2); Has 2727 Blast hits to 2656 proteins in 794 species: Archae - 0; Bacteria - 1143; Metazoa - 823; Fungi - 356; Plants - 236; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description) 0.8696187582311646 18 evm.model.contig_4524.1 (original description: no original description) 0.8686181329489319 25 evm.model.contig_2238.1 no hits & (original description: no original description) 0.8672656505265646 28 evm.model.contig_3806.2 no hits & (original description: no original description) 0.8671737059710044 99 evm.model.contig_2238.2 no hits & (original description: no original description) 0.8654013178030628 27 evm.model.contig_2036.12 no hits & (original description: no original description) 0.8627459611808089 35 evm.model.contig_2133.1 no hits & (original description: no original description) 0.8615205666725468 24 evm.model.contig_431.4 (at1g18890 : 114.0) encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro.; calcium-dependent protein kinase 1 (CDPK1); FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity; INVOLVED IN: response to water deprivation, response to salt stress, protein amino acid phosphorylation, N-terminal protein myristoylation, abscisic acid mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 30 (TAIR:AT1G74740.1); Has 125370 Blast hits to 119826 proteins in 3847 species: Archae - 176; Bacteria - 14154; Metazoa - 46310; Fungi - 16874; Plants - 24900; Viruses - 438; Other Eukaryotes - 22518 (source: NCBI BLink). & (q75v63|sapk3_orysa : 104.0) Serine/threonine-protein kinase SAPK3 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 3) (Protein kinase REK) - Oryza sativa (Rice) & (reliability: 212.0) & (original description: no original description) 0.8612607445892134 25 evm.model.contig_2073.1 no hits & (original description: no original description) 0.8598318587104612 54 evm.model.contig_651.5 no hits & (original description: no original description) 0.8578456256895424 27 evm.model.contig_4740.1 no hits & (original description: no original description) 0.8570743825958905 39 evm.model.contig_4484.2 (at1g61950 : 110.0) member of Calcium Dependent Protein Kinase; calcium-dependent protein kinase 19 (CPK19); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 21 (TAIR:AT4G04720.1); Has 133224 Blast hits to 125450 proteins in 3926 species: Archae - 174; Bacteria - 14115; Metazoa - 49308; Fungi - 18158; Plants - 27356; Viruses - 479; Other Eukaryotes - 23634 (source: NCBI BLink). & (q43531|ccamk_lillo : 109.0) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (EC 2.7.11.17) (LlCCaMK) - Lilium longiflorum (Trumpet lily) & (reliability: 216.0) & (original description: no original description) 0.8534041085145493 90 evm.model.contig_4638.1 no hits & (original description: no original description) 0.8518270523294571 33 evm.model.contig_2051.31 (at1g01140 : 246.0) Encodes a CBL-interacting protein kinase with similarity to SOS2; CBL-interacting protein kinase 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1); Has 130572 Blast hits to 128490 proteins in 4426 species: Archae - 165; Bacteria - 15544; Metazoa - 48044; Fungi - 13206; Plants - 31490; Viruses - 522; Other Eukaryotes - 21601 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 239.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 492.0) & (original description: no original description) 0.8512082549024318 98 evm.model.contig_769.1 no hits & (original description: no original description) 0.8479023937601081 43 evm.model.contig_2082.1 no hits & (original description: no original description) 0.845794317947176 37 evm.model.contig_429.12 (q6k1c4|cax3_orysa : 193.0) Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (OsCAX3) - Oryza sativa (Rice) & (at3g51860 : 184.0) cation exchanger 3 (CAX3); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 1 (TAIR:AT2G38170.1); Has 3567 Blast hits to 3405 proteins in 1022 species: Archae - 24; Bacteria - 2167; Metazoa - 14; Fungi - 725; Plants - 252; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description) 0.8443846129735668 38 evm.model.contig_2348.4 no hits & (original description: no original description) 0.8424876149808793 41 evm.model.contig_3441.3 no hits & (original description: no original description) 0.8397108629275783 42 evm.model.contig_865.4 no hits & (original description: no original description) 0.8370974308826716 43 evm.model.contig_4495.8 no hits & (original description: no original description) 0.835219809148975 44 evm.model.contig_4406.13 no hits & (original description: no original description) 0.8349926059417969 45 evm.model.contig_4550.1 no hits & (original description: no original description) 0.8285339931944421 53 evm.model.contig_2518.4 (original description: no original description) 0.8249825995748733 57 evm.model.contig_2036.10 (original description: no original description) 0.8202608157109132 61 evm.model.contig_3601.2 no hits & (original description: no original description) 0.8179209414551664 63 evm.model.contig_3573.3 no hits & (original description: no original description) 0.8172016598476458 64 evm.model.contig_4491.10 no hits & (original description: no original description) 0.8127869431553353 67 evm.model.contig_2122.16 (at5g09930 : 522.0) member of GCN subfamily; GENERAL CONTROL NON-REPRESSIBLE 2 (GCN2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 5 (TAIR:AT5G64840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1044.0) & (original description: no original description) 0.808169400271462 87 evm.model.contig_530.7 no hits & (original description: no original description) 0.8049517715836454 79 evm.model.contig_2179.7 no hits & (original description: no original description) 0.8044239209487736 81 evm.model.contig_2190.6 no hits & (original description: no original description) 0.8032565119477955 86 evm.model.contig_522.13 (at5g57960 : 365.0) GTP-binding protein, HflX; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HflX (InterPro:IPR016496), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding protein, HflX (TAIR:AT3G49725.1); Has 31952 Blast hits to 30531 proteins in 2948 species: Archae - 298; Bacteria - 25096; Metazoa - 510; Fungi - 190; Plants - 240; Viruses - 0; Other Eukaryotes - 5618 (source: NCBI BLink). & (reliability: 730.0) & (original description: no original description) 0.8021273709251957 83 evm.model.contig_620.3 no hits & (original description: no original description) 0.7966874344639973 89 evm.model.contig_2279.17 (at5g58490 : 112.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G02400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p51104|dfra_diaca : 101.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 214.0) & (original description: no original description) 0.7955032983384027 91 evm.model.contig_2147.3 (original description: no original description) 0.7950946865390083 92 evm.model.contig_2036.9 (original description: no original description) 0.7941923870093229 94 evm.model.contig_2024.22 no hits & (original description: no original description) 0.7938261810793457 95