Sequence Description Alias PCC hrr evm.model.contig_474.1 (at3g56690 : 117.0) encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined.; Cam interacting protein 111 (CIP111); FUNCTIONS IN: ATPase activity, calmodulin binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 63578 Blast hits to 32942 proteins in 3240 species: Archae - 2541; Bacteria - 24762; Metazoa - 9322; Fungi - 6853; Plants - 5967; Viruses - 72; Other Eukaryotes - 14061 (source: NCBI BLink). & (p54774|cdc48_soybn : 110.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 234.0) & (original description: no original description) 0.9535841654382436 16 evm.model.contig_503.12 (at1g50250 : 579.0) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.; FTSH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, protein binding, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT5G42270.1); Has 39789 Blast hits to 37355 proteins in 3308 species: Archae - 1512; Bacteria - 16133; Metazoa - 4957; Fungi - 3666; Plants - 3305; Viruses - 34; Other Eukaryotes - 10182 (source: NCBI BLink). & (q5z974|ftsh_orysa : 578.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1158.0) & (original description: no original description) 0.9478548788775731 46 evm.model.contig_4431.10 no hits & (original description: no original description) 0.9444559826798677 32 evm.model.contig_3478.8 no hits & (original description: no original description) 0.9420452526602838 43 evm.model.contig_2246.4 no hits & (original description: no original description) 0.9407799331239897 5 evm.model.contig_527.21 no hits & (original description: no original description) 0.9394857340642188 19 evm.model.contig_2120.1 no hits & (original description: no original description) 0.9362611860896425 7 evm.model.contig_2098.15 no hits & (original description: no original description) 0.9335099399999823 63 evm.model.contig_2079.7 no hits & (original description: no original description) 0.9334360133276062 9 evm.model.contig_2020.26 no hits & (original description: no original description) 0.9287058622910349 61 evm.model.contig_3491.14 no hits & (original description: no original description) 0.9278482445928656 13 evm.model.contig_4487.6 (at3g50530 : 187.0) CDPK-related kinase; CDPK-related kinase (CRK); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: CDPK-related kinase 1 (TAIR:AT2G41140.1). & (p53681|crk_dauca : 185.0) CDPK-related protein kinase (EC 2.7.11.1) (PK421) - Daucus carota (Carrot) & (reliability: 374.0) & (original description: no original description) 0.9272788870325465 79 evm.model.contig_527.2 no hits & (original description: no original description) 0.9247933344511547 40 evm.model.contig_3494.6 (at5g06420 : 114.0) Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT1G01350.1); Has 883 Blast hits to 880 proteins in 224 species: Archae - 0; Bacteria - 1; Metazoa - 340; Fungi - 209; Plants - 163; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description) 0.923977972487546 75 evm.model.contig_2127.5 no hits & (original description: no original description) 0.922840517475631 27 evm.model.contig_467.6 no hits & (original description: no original description) 0.9226320962671645 98 evm.model.contig_484.3 no hits & (original description: no original description) 0.9226048587686564 90 evm.model.contig_2157.12 (original description: no original description) 0.9208305046237908 97 evm.model.contig_482.8 no hits & (original description: no original description) 0.9202543681355165 26 evm.model.contig_493.2 no hits & (original description: no original description) 0.9171632950323045 57 evm.model.contig_4456.3 no hits & (original description: no original description) 0.9168712498142727 74 evm.model.contig_2262.6 no hits & (original description: no original description) 0.9141071997240277 49 evm.model.contig_2190.4 no hits & (original description: no original description) 0.9121552408776571 34 evm.model.contig_2347.3 (at3g15460 : 210.0) Ribosomal RNA processing Brix domain protein; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT1G52930.1); Has 415 Blast hits to 413 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 66; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). & (reliability: 420.0) & (original description: no original description) 0.9121501939053693 83 evm.model.contig_2017.9 no hits & (original description: no original description) 0.9120506085957527 44 evm.model.contig_4438.20 (at3g44680 : 541.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 513.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1082.0) & (original description: no original description) 0.9119851245922113 53 evm.model.contig_2494.34 no hits & (original description: no original description) 0.9114023119883857 73 evm.model.contig_503.13 (at5g61460 : 315.0) Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; hypersensitive to MMS, irradiation and MMC (MIM); FUNCTIONS IN: ATP binding; INVOLVED IN: double-strand break repair, sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 6A (TAIR:AT5G07660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description) 0.9111056743863337 64 evm.model.contig_2259.6 (q6zix2|smt1_orysa : 277.0) Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C-methyltransferase 1) (Sterol C-methyltransferase 1) - Oryza sativa (Rice) & (at5g13710 : 276.0) SMT1 controls the level of cholesterol in plants; sterol methyltransferase 1 (SMT1); CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 3 (TAIR:AT1G76090.1); Has 12253 Blast hits to 12250 proteins in 2286 species: Archae - 352; Bacteria - 8578; Metazoa - 91; Fungi - 457; Plants - 727; Viruses - 0; Other Eukaryotes - 2048 (source: NCBI BLink). & (reliability: 552.0) & (original description: no original description) 0.9103684504215533 86 evm.model.contig_2056.10 (at4g24810 : 226.0) similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147); Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G50330.1). & (reliability: 452.0) & (original description: no original description) 0.9096653432172079 45 evm.model.contig_2707.2 no hits & (original description: no original description) 0.9080441388057826 75 evm.model.contig_4461.3 no hits & (original description: no original description) 0.907953138436046 50 evm.model.contig_2296.15 no hits & (original description: no original description) 0.9073512392653013 72 evm.model.contig_542.13 (at1g09280 : 85.9) CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). & (reliability: 171.8) & (original description: no original description) 0.9068306649257579 53 evm.model.contig_482.14 no hits & (original description: no original description) 0.9023742990085254 63 evm.model.contig_448.25 (p25868|ubc7_wheat : 224.0) Ubiquitin-conjugating enzyme E2 7 (EC 6.3.2.19) (Ubiquitin-protein ligase 7) (Ubiquitin carrier protein 7) - Triticum aestivum (Wheat) & (at5g59300 : 223.0) ubiquitin conjugating enzyme E2; ubiquitin carrier protein 7 (UBC7); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 13 (TAIR:AT3G46460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 446.0) & (original description: no original description) 0.9016241985057271 66 evm.model.contig_510.11 no hits & (original description: no original description) 0.9012792238629236 67 evm.model.contig_2064.3 no hits & (original description: no original description) 0.8976229715023639 76 evm.model.contig_2116.6 no hits & (original description: no original description) 0.8959267752493938 82 evm.model.contig_3800.4 (at5g55260 : 384.0) Encodes a protein with similarity to the catalytic subunit of the mammalian PPX protein phospatase.; protein phosphatase X 2 (PPX2); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase X 1 (TAIR:AT4G26720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q9xgt7|pp2a3_orysa : 352.0) Serine/threonine-protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.16) - Oryza sativa (Rice) & (reliability: 768.0) & (original description: no original description) 0.8952538564939174 81 evm.model.contig_2142.2 no hits & (original description: no original description) 0.8934330409540072 98 evm.model.contig_4450.1 no hits & (original description: no original description) 0.8933576019279197 90 evm.model.contig_3495.5 no hits & (original description: no original description) 0.8932964646026212 91 evm.model.contig_4456.20 (at4g35410 : 171.0) Clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: associated protein 19 (TAIR:AT2G17380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o50016|ap2s1_maize : 119.0) AP-2 complex subunit sigma-1 (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin assembly protein 2 small chain) - Zea mays (Maize) & (reliability: 342.0) & (original description: no original description) 0.8929617908471884 94 evm.model.contig_2347.5 no hits & (original description: no original description) 0.8929279365203608 95 evm.model.contig_480.1 (original description: no original description) 0.8922037257001635 96 evm.model.contig_2083.7 no hits & (original description: no original description) 0.8905625440140476 100