Sequence Description Alias PCC hrr evm.model.contig_4512.6 (at2g21270 : 194.0) ubiquitin fusion degradation 1 (UFD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G38930.2); Has 705 Blast hits to 703 proteins in 222 species: Archae - 8; Bacteria - 2; Metazoa - 165; Fungi - 211; Plants - 127; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink). & (reliability: 388.0) & (original description: no original description) 0.9689637189077734 1 evm.model.contig_3388.5 (at5g19530 : 161.0) Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.; ACAULIS 5 (ACL5); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 4823 Blast hits to 4823 proteins in 1442 species: Archae - 170; Bacteria - 2608; Metazoa - 258; Fungi - 194; Plants - 443; Viruses - 0; Other Eukaryotes - 1150 (source: NCBI BLink). & (o48660|spde_nicsy : 117.0) Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) (Aminopropyltransferase) - Nicotiana sylvestris (Wood tobacco) & (reliability: 322.0) & (original description: no original description) 0.9660329154371349 2 evm.model.contig_3401.2 no hits & (original description: no original description) 0.9655498781702552 3 evm.model.contig_2065.8 (at1g30270 : 282.0) Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylating AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9.; CBL-interacting protein kinase 23 (CIPK23); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 9 (TAIR:AT1G01140.1); Has 132391 Blast hits to 130112 proteins in 4449 species: Archae - 167; Bacteria - 15551; Metazoa - 48688; Fungi - 13416; Plants - 32041; Viruses - 531; Other Eukaryotes - 21997 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 269.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 564.0) & (original description: no original description) 0.9569160242921388 15 evm.model.contig_3388.9 no hits & (original description: no original description) 0.9565497131469933 13 evm.model.contig_3508.5 (at1g80600 : 92.8) Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).; HOPW1-1-interacting 1 (WIN1); FUNCTIONS IN: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity, copper ion binding; INVOLVED IN: defense response to bacterium; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Acetylornithine/succinylornithine aminotransferase (InterPro:IPR004636), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ornithine-delta-aminotransferase (TAIR:AT5G46180.1); Has 36928 Blast hits to 36904 proteins in 2775 species: Archae - 735; Bacteria - 23598; Metazoa - 655; Fungi - 914; Plants - 410; Viruses - 17; Other Eukaryotes - 10599 (source: NCBI BLink). & (reliability: 185.6) & (original description: no original description) 0.9563037762885835 6 evm.model.contig_2102.4 no hits & (original description: no original description) 0.9537511543551803 7 evm.model.contig_3415.7 no hits & (original description: no original description) 0.9506218895871674 11 evm.model.contig_4467.1 (at3g13340 : 276.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G55680.1). & (reliability: 552.0) & (original description: no original description) 0.9491255388000214 9 evm.model.contig_2060.1 no hits & (original description: no original description) 0.9478295518920576 16 evm.model.contig_4402.15 no hits & (original description: no original description) 0.9474746575988764 37 evm.model.contig_693.13 no hits & (original description: no original description) 0.9432709664244577 28 evm.model.contig_2031.12 (at5g23340 : 143.0) RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description) 0.9411712910075481 54 evm.model.contig_4462.5 (at4g35800 : 1580.0) Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.; RNA polymerase II large subunit (NRPB1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, transcription from RNA polymerase II promoter; LOCATED IN: nucleus, chloroplast, DNA-directed RNA polymerase II, core complex, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase II, heptapeptide repeat, eukaryotic (InterPro:IPR000684), RNA polymerase Rpb1, domain 7 (InterPro:IPR007073), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 6 (InterPro:IPR007075); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 181834 Blast hits to 82224 proteins in 9254 species: Archae - 731; Bacteria - 33255; Metazoa - 56600; Fungi - 34284; Plants - 19037; Viruses - 3576; Other Eukaryotes - 34351 (source: NCBI BLink). & (gnl|cdd|68872 : 252.0) no description available & (q9mus6|rpoc1_mesvi : 128.0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) - Mesostigma viride & (gnl|cdd|37260 : 87.4) no description available & (reliability: 3160.0) & (original description: no original description) 0.9399914907071604 42 evm.model.contig_2342.2 no hits & (original description: no original description) 0.9373674131425281 24 evm.model.contig_454.6 (at3g57230 : 92.4) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.; AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7191 Blast hits to 7190 proteins in 917 species: Archae - 0; Bacteria - 14; Metazoa - 643; Fungi - 316; Plants - 6129; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). & (q6ep49|mad27_orysa : 89.4) MADS-box transcription factor 27 (OsMADS27) (RMADS218) - Oryza sativa (Rice) & (reliability: 184.8) & (original description: no original description) 0.9366575224879875 32 evm.model.contig_2251.4 no hits & (original description: no original description) 0.9360614813514008 17 evm.model.contig_2133.2 (original description: no original description) 0.9360351646312103 55 evm.model.contig_4435.8 (at5g15450 : 745.0) Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype.; casein lytic proteinase B3 (CLPB3); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 709.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1490.0) & (original description: no original description) 0.93504489851019 19 evm.model.contig_4553.1 no hits & (original description: no original description) 0.9297690172267437 20 evm.model.contig_3575.2 (q03943|im30_pea : 158.0) Membrane-associated 30 kDa protein, chloroplast precursor (M30) - Pisum sativum (Garden pea) & (at1g65260 : 151.0) Encodes a protein required for thylakoid membrane formation.; plastid transcriptionally active 4 (PTAC4); INVOLVED IN: vesicle organization, thylakoid membrane organization; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PspA/IM30 (InterPro:IPR007157); Has 3123 Blast hits to 3108 proteins in 1139 species: Archae - 38; Bacteria - 2412; Metazoa - 160; Fungi - 68; Plants - 89; Viruses - 95; Other Eukaryotes - 261 (source: NCBI BLink). & (reliability: 302.0) & (original description: no original description) 0.9281771106014939 21 evm.model.contig_2494.18 (at5g39440 : 152.0) SNF1-related protein kinase 1.3 (SnRK1.3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 134559 Blast hits to 132128 proteins in 4775 species: Archae - 156; Bacteria - 15425; Metazoa - 49691; Fungi - 13625; Plants - 32691; Viruses - 538; Other Eukaryotes - 22433 (source: NCBI BLink). & (q75h77|sapka_orysa : 149.0) Serine/threonine-protein kinase SAPK10 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 10) - Oryza sativa (Rice) & (reliability: 290.0) & (original description: no original description) 0.9281039882043797 34 evm.model.contig_639.3 (original description: no original description) 0.9269858163632093 23 evm.model.contig_723.1 (gnl|cdd|68872 : 153.0) no description available & (at3g04240 : 95.9) Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene.; secret agent (SEC); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 114710 Blast hits to 35863 proteins in 2480 species: Archae - 3197; Bacteria - 54774; Metazoa - 16661; Fungi - 4580; Plants - 3873; Viruses - 0; Other Eukaryotes - 31625 (source: NCBI BLink). & (gnl|cdd|39774 : 90.6) no description available & (o82422|spy_horvu : 88.2) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-) (HvSPY) - Hordeum vulgare (Barley) & (reliability: 191.8) & (original description: no original description) 0.9263106339026471 33 evm.model.contig_2024.16 (p05434|catr_chlre : 126.0) Caltractin (Centrin) (20 kDa calcium-binding protein) - Chlamydomonas reinhardtii & (at5g37780 : 109.0) encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.; calmodulin 1 (CAM1); CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 4 (TAIR:AT1G66410.1); Has 29914 Blast hits to 22079 proteins in 1723 species: Archae - 3; Bacteria - 127; Metazoa - 13080; Fungi - 6590; Plants - 6083; Viruses - 0; Other Eukaryotes - 4031 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.9259429482704509 63 evm.model.contig_578.3 no hits & (original description: no original description) 0.9253397857511076 27 evm.model.contig_3438.4 no hits & (original description: no original description) 0.9244076841368555 27 evm.model.contig_3410.2 (at4g04885 : 83.6) Encodes PCFS4 (Pcf11p-similar protein 4), a homolog of yeast polyadenylation factor Protein 1 of Cleavage Factor (Pcf11p). Regulates FCA (AT4G16280) mRNA polyadenylation. Promotes flowering time.; PCF11P-similar protein 4 (PCFS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: positive regulation of flower development, mRNA polyadenylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: shoot apical meristem, sepal, gynoecium, stamen, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Pre-mRNA cleavage complex II (TAIR:AT1G66500.1); Has 656 Blast hits to 406 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 279; Plants - 120; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.9236379152966459 57 evm.model.contig_3511.3 (at5g35980 : 220.0) yeast YAK1-related gene 1 (YAK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17750.1); Has 91682 Blast hits to 90157 proteins in 2771 species: Archae - 99; Bacteria - 7981; Metazoa - 36897; Fungi - 11192; Plants - 18283; Viruses - 359; Other Eukaryotes - 16871 (source: NCBI BLink). & (q40532|ntf4_tobac : 132.0) Mitogen-activated protein kinase homolog NTF4 (EC 2.7.11.24) (P45) - Nicotiana tabacum (Common tobacco) & (reliability: 440.0) & (original description: no original description) 0.9212676959733671 48 evm.model.contig_4400.10 no hits & (original description: no original description) 0.9209415817424539 31 evm.model.contig_3450.17 no hits & (original description: no original description) 0.9186080370205969 39 evm.model.contig_2076.9 (at2g15230 : 152.0) Lipase active on medium and short chain triacylglycerols, but not on phospho- or galactolipids. Active between pH4 and 7 with an optimum at pH6. Knock-out mutant has not obvious phenotype. Predicted to be extracellular.; lipase 1 (LIP1); CONTAINS InterPro DOMAIN/s: AB-hydrolase-associated lipase region (InterPro:IPR006693), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: Myzus persicae-induced lipase 1 (TAIR:AT5G14180.1); Has 1912 Blast hits to 1877 proteins in 247 species: Archae - 0; Bacteria - 112; Metazoa - 1231; Fungi - 287; Plants - 167; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description) 0.9180417782446084 57 evm.model.contig_2283.5 no hits & (original description: no original description) 0.9173491450051968 37 evm.model.contig_567.3 no hits & (original description: no original description) 0.9168034222368904 44 evm.model.contig_4483.7 (at2g42790 : 399.0) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.; citrate synthase 3 (CSY3); FUNCTIONS IN: citrate (SI)-synthase activity; INVOLVED IN: fatty acid beta-oxidation, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, type II (InterPro:IPR010953), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141), Citrate synthase active site (InterPro:IPR019810); BEST Arabidopsis thaliana protein match is: citrate synthase 2 (TAIR:AT3G58750.1); Has 13520 Blast hits to 13518 proteins in 3201 species: Archae - 174; Bacteria - 8544; Metazoa - 357; Fungi - 325; Plants - 176; Viruses - 0; Other Eukaryotes - 3944 (source: NCBI BLink). & (p49299|cysz_cucma : 394.0) Citrate synthase, glyoxysomal precursor (EC 2.3.3.1) (GCS) - Cucurbita maxima (Pumpkin) (Winter squash) & (reliability: 798.0) & (original description: no original description) 0.9166509417295338 37 evm.model.contig_2210.2 no hits & (original description: no original description) 0.9163376994320018 39 evm.model.contig_4404.5 no hits & (original description: no original description) 0.9159429580013859 92 evm.model.contig_3385.15 (at4g10430 : 141.0) TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 282.0) & (original description: no original description) 0.9137579872406818 41 evm.model.contig_2284.3 no hits & (original description: no original description) 0.9115192342288766 44 evm.model.contig_618.5 (at2g47000 : 919.0) Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above.; ATP binding cassette subfamily B4 (ABCB4); FUNCTIONS IN: xenobiotic-transporting ATPase activity, ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 21 (TAIR:AT3G62150.1); Has 844144 Blast hits to 390751 proteins in 4168 species: Archae - 14748; Bacteria - 659498; Metazoa - 17847; Fungi - 13026; Plants - 10001; Viruses - 45; Other Eukaryotes - 128979 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 773.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 1838.0) & (original description: no original description) 0.9114679227770363 44 evm.model.contig_724.2 no hits & (original description: no original description) 0.9108192634332576 49 evm.model.contig_4404.36 no hits & (original description: no original description) 0.9087765195643266 50 evm.model.contig_447.10 (at3g11920 : 172.0) glutaredoxin-related; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: intracellular signaling pathway, cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), DEP domain (InterPro:IPR000591), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: electron carriers;protein disulfide oxidoreductases (TAIR:AT4G08550.1); Has 2850 Blast hits to 2806 proteins in 762 species: Archae - 4; Bacteria - 1389; Metazoa - 366; Fungi - 36; Plants - 426; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description) 0.9087678592467499 51 evm.model.contig_3410.1 no hits & (original description: no original description) 0.9071190811775449 53 evm.model.contig_610.4 no hits & (original description: no original description) 0.905698233254006 56 evm.model.contig_525.5 no hits & (original description: no original description) 0.9030277345263121 57 evm.model.contig_447.6 (at5g03900 : 227.0) Iron-sulphur cluster biosynthesis family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 454.0) & (original description: no original description) 0.9024104899474815 59 evm.model.contig_2044.20 no hits & (original description: no original description) 0.9012546198106927 93 evm.model.contig_3384.18 no hits & (original description: no original description) 0.8999887921084136 86 evm.model.contig_737.1 (original description: no original description) 0.899030462534449 95 evm.model.contig_3388.4 (at4g21800 : 273.0) Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370).; quatre-quart2 (QQT2); FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: embryo development, cell division; LOCATED IN: microtubule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G12790.5); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 546.0) & (original description: no original description) 0.8987366072663503 71 evm.model.contig_3552.1 (at1g02170 : 189.0) Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain; metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink). & (gnl|cdd|34653 : 128.0) no description available & (reliability: 378.0) & (original description: no original description) 0.8986906276017882 65 evm.model.contig_4476.17 (at2g30360 : 248.0) Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter.; SOS3-interacting protein 4 (SIP4); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase 1 (TAIR:AT5G01820.1); Has 132389 Blast hits to 130226 proteins in 4650 species: Archae - 184; Bacteria - 15582; Metazoa - 48520; Fungi - 13393; Plants - 32054; Viruses - 541; Other Eukaryotes - 22115 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 236.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 496.0) & (original description: no original description) 0.8969209840238278 66 evm.model.contig_4465.9 no hits & (original description: no original description) 0.895421826359315 68 evm.model.contig_604.5 no hits & (original description: no original description) 0.8949180019728276 70 evm.model.contig_3504.1 (at1g14570 : 108.0) UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 596 Blast hits to 582 proteins in 180 species: Archae - 0; Bacteria - 6; Metazoa - 214; Fungi - 136; Plants - 152; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) 0.8943219734159832 73 evm.model.contig_693.4 no hits & (original description: no original description) 0.8942855830778469 72 evm.model.contig_569.1 (at3g27380 : 322.0) One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.; succinate dehydrogenase 2-1 (SDH2-1); CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 2-2 (TAIR:AT5G40650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 644.0) & (original description: no original description) 0.8935605036828209 73 evm.model.contig_2324.3 no hits & (original description: no original description) 0.89076577368687 75 evm.model.contig_542.3 no hits & (original description: no original description) 0.8899282843417697 77 evm.model.contig_2287.2 no hits & (original description: no original description) 0.8897965523840468 78 evm.model.contig_2283.1 no hits & (original description: no original description) 0.8869946141067474 82 evm.model.contig_503.5 (gnl|cdd|68872 : 134.0) no description available & (at5g07740 : 112.0) actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: shoot apex, stem; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Tensin phosphatase, C2 domain (InterPro:IPR014020), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 protein (TAIR:AT5G07770.1). & (gnl|cdd|39774 : 82.5) no description available & (reliability: 224.0) & (original description: no original description) 0.8865038580153273 89 evm.model.contig_2494.6 (original description: no original description) 0.8863016918183968 84 evm.model.contig_2663.1 (at4g16440 : 162.0) Encodes a [FeFe]-hydrogenase-like protein named Gollum (for Growth in different Oxygen LeveLs inflUences Morphogenesis). Heterologous expression of Gollum in E. coli indicates that it probably contains two [Fe-S] clusters with different magnetic properties. Sequence alignment analysis indicates that these two clusters would be topologically equivalent to the mesial and proximal [Fe-S] centers of [FeFe]-hydrogenases. Knockdown mutants (RNAi) show a dwarf phenotype at the normal atmospheric partial oxygen pressure of 21 kPa. This dwarf phenotype could be rescued by growing the plant under low oxygen pressure (5kPa), suggesting a role for this gene in oxygen sensing.; ferredoxin hydrogenases; CONTAINS InterPro DOMAIN/s: Iron hydrogenase, large subunit, C-terminal (InterPro:IPR004108), Iron hydrogenase (InterPro:IPR009016), Iron hydrogenase, small subunit-like (InterPro:IPR003149); Has 2574 Blast hits to 2544 proteins in 612 species: Archae - 1; Bacteria - 1826; Metazoa - 221; Fungi - 188; Plants - 72; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink). & (q43644|ndus1_soltu : 117.0) NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-75kD) (CI-75kD) (76 kDa mitochondrial complex I subunit) - Solanum tuberosum (Potato) & (reliability: 324.0) & (original description: no original description) 0.8862458373278514 85 evm.model.contig_590.3 no hits & (original description: no original description) 0.8832994155917367 90 evm.model.contig_3453.1 no hits & (original description: no original description) 0.8814881623476626 97 evm.model.contig_4489.1 no hits & (original description: no original description) 0.8801880380900184 99 evm.model.contig_444.26 no hits & (original description: no original description) 0.8801004750500296 100