Sequence Description Alias PCC hrr evm.model.contig_4488.2 no hits & (original description: no original description) 0.9667687650532827 2 evm.model.contig_2132.4 no hits & (original description: no original description) 0.9554454856827141 8 evm.model.contig_517.3 (at3g09580 : 247.0) FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2908 Blast hits to 2906 proteins in 704 species: Archae - 36; Bacteria - 1433; Metazoa - 261; Fungi - 51; Plants - 352; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink). & (reliability: 494.0) & (original description: no original description) 0.9454468930513394 9 evm.model.contig_4448.11 no hits & (original description: no original description) 0.9398050072416797 17 evm.model.contig_3420.3 no hits & (original description: no original description) 0.9394246703394542 28 evm.model.contig_2022.9 no hits & (original description: no original description) 0.9375009700344674 29 evm.model.contig_2059.1 (at3g63140 : 146.0) Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.; chloroplast stem-loop binding protein of 41 kDa (CSP41A); FUNCTIONS IN: mRNA binding, poly(U) RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast RNA binding (TAIR:AT1G09340.1); Has 1047 Blast hits to 1047 proteins in 372 species: Archae - 70; Bacteria - 649; Metazoa - 6; Fungi - 5; Plants - 106; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description) 0.9313672035632006 23 evm.model.contig_3423.15 no hits & (original description: no original description) 0.9313290867440411 43 evm.model.contig_469.1 no hits & (original description: no original description) 0.9306351976996855 34 evm.model.contig_4591.1 no hits & (original description: no original description) 0.9298571626263128 25 evm.model.contig_429.11 no hits & (original description: no original description) 0.9296791554523623 22 evm.model.contig_3387.8 no hits & (original description: no original description) 0.926606022361075 42 evm.model.contig_479.20 (o22506|glna2_dauca : 436.0) Glutamine synthetase, chloroplast precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (GS2) - Daucus carota (Carrot) & (at5g35630 : 426.0) chloroplastic glutamine synthetase; glutamine synthetase 2 (GS2); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthase clone F11 (TAIR:AT1G66200.1); Has 8236 Blast hits to 8234 proteins in 2572 species: Archae - 144; Bacteria - 3324; Metazoa - 415; Fungi - 259; Plants - 1746; Viruses - 3; Other Eukaryotes - 2345 (source: NCBI BLink). & (reliability: 852.0) & (original description: no original description) 0.9263687665292731 35 evm.model.contig_2396.1 no hits & (original description: no original description) 0.9236830772665332 34 evm.model.contig_3388.8 (at3g11040 : 138.0) Glycosyl hydrolase family 85 ; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 85 (InterPro:IPR005201), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 85 (TAIR:AT5G05460.1); Has 486 Blast hits to 477 proteins in 213 species: Archae - 0; Bacteria - 256; Metazoa - 108; Fungi - 38; Plants - 49; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 276.0) & (original description: no original description) 0.9223038647073495 17 evm.model.contig_2386.3 (q5n941|dmi1_orysa : 133.0) Probable ion channel DMI1, chloroplast precursor - Oryza sativa (Rice) & (at5g49960 : 116.0) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description) 0.9222420156160053 39 evm.model.contig_2493.3 (p27523|cb23_horvu : 90.9) Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor (CAB) - Hordeum vulgare (Barley) & (at5g54270 : 87.4) Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).; light-harvesting chlorophyll B-binding protein 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description) 0.9201098069547704 58 evm.model.contig_2102.19 no hits & (original description: no original description) 0.9185780719612017 50 evm.model.contig_2276.3 (at4g36530 : 197.0) alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G19850.1); Has 21771 Blast hits to 21766 proteins in 2265 species: Archae - 246; Bacteria - 15770; Metazoa - 624; Fungi - 315; Plants - 912; Viruses - 5; Other Eukaryotes - 3899 (source: NCBI BLink). & (reliability: 394.0) & (original description: no original description) 0.9157466386128233 56 evm.model.contig_4432.23 no hits & (original description: no original description) 0.9150121930915677 65 evm.model.contig_468.10 (at1g50430 : 256.0) Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype.; DWARF 5 (DWF5); FUNCTIONS IN: sterol delta7 reductase activity; INVOLVED IN: sterol biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: integral to endoplasmic reticulum membrane, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol reductase, conserved site (InterPro:IPR018083), Ergosterol biosynthesis ERG4/ERG24 (InterPro:IPR001171); BEST Arabidopsis thaliana protein match is: Ergosterol biosynthesis ERG4/ERG24 family (TAIR:AT3G52940.1); Has 974 Blast hits to 971 proteins in 205 species: Archae - 0; Bacteria - 51; Metazoa - 266; Fungi - 402; Plants - 150; Viruses - 3; Other Eukaryotes - 102 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description) 0.9145328585561094 58 evm.model.contig_4478.5 no hits & (original description: no original description) 0.9135449006350163 22 evm.model.contig_3401.29 (at1g54220 : 198.0) Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, acyltransferase activity; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT3G13930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 396.0) & (original description: no original description) 0.9135417809629588 45 evm.model.contig_2302.1 no hits & (original description: no original description) 0.9118612528589108 74 evm.model.contig_3450.2 no hits & (original description: no original description) 0.9118359962467387 51 evm.model.contig_4488.1 (q42682|hem2_chlre : 397.0) Delta-aminolevulinic acid dehydratase, chloroplast precursor (EC 4.2.1.24) (Porphobilinogen synthase) (ALADH) - Chlamydomonas reinhardtii & (at1g69740 : 382.0) Encodes a putative 5-aminolevulinate dehydratase involved in chlorophyll biosynthesis.; HEMB1; FUNCTIONS IN: porphobilinogen synthase activity, catalytic activity, metal ion binding; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Tetrapyrrole biosynthesis, porphobilinogen synthase (InterPro:IPR001731); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT1G44318.1); Has 6820 Blast hits to 6820 proteins in 2111 species: Archae - 162; Bacteria - 3714; Metazoa - 160; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2538 (source: NCBI BLink). & (reliability: 764.0) & (original description: no original description) 0.9116123850068716 26 evm.model.contig_3413.2 (at4g37680 : 119.0) heptahelical transmembrane protein HHP4; heptahelical protein 4 (HHP4); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 5 (TAIR:AT4G38320.1). & (reliability: 238.0) & (original description: no original description) 0.9115424195031049 67 evm.model.contig_4442.10 (at3g48380 : 307.0) Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (InterPro:IPR012462). & (reliability: 614.0) & (original description: no original description) 0.9104452719115353 70 evm.model.contig_496.8 (at4g00550 : 344.0) encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.; digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6dw74|dgdg1_lotja : 342.0) Digalactosyldiacylglycerol synthase 1, chloroplast precursor (EC 2.4.1.241) - Lotus japonicus & (reliability: 688.0) & (original description: no original description) 0.9102422776600815 54 evm.model.contig_2066.4 (original description: no original description) 0.910171043851786 63 evm.model.contig_3431.7 no hits & (original description: no original description) 0.9101505587495214 61 evm.model.contig_2075.4 (p23400|trxm_chlre : 102.0) Thioredoxin M-type, chloroplast precursor (TRX-M) (Thioredoxin CH2) - Chlamydomonas reinhardtii & (at1g50320 : 92.8) encodes a prokaryotic thioredoxin; thioredoxin X (THX); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 20779 Blast hits to 19654 proteins in 2968 species: Archae - 276; Bacteria - 11383; Metazoa - 2412; Fungi - 1075; Plants - 1697; Viruses - 7; Other Eukaryotes - 3929 (source: NCBI BLink). & (reliability: 185.6) & (original description: no original description) 0.9090211782921056 64 evm.model.contig_479.23 (at3g21390 : 124.0) Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G48970.1); Has 30580 Blast hits to 14322 proteins in 462 species: Archae - 0; Bacteria - 0; Metazoa - 12689; Fungi - 9312; Plants - 5408; Viruses - 0; Other Eukaryotes - 3171 (source: NCBI BLink). & (reliability: 248.0) & (original description: no original description) 0.9089024620466013 77 evm.model.contig_2663.4 (p14226|psbo_pea : 251.0) Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) - Pisum sativum (Garden pea) & (at5g66570 : 235.0) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO proteins are encoded by two genes: <i>psbO1</i> and <i>psbO2</i>. PsbO1 is the major isoform in the wild-type.; PS II oxygen-evolving complex 1 (PSBO1); FUNCTIONS IN: oxygen evolving activity, poly(U) RNA binding; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilising protein PsbO (InterPro:IPR002628); BEST Arabidopsis thaliana protein match is: photosystem II subunit O-2 (TAIR:AT3G50820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 470.0) & (original description: no original description) 0.9082285955778314 73 evm.model.contig_2347.8 no hits & (original description: no original description) 0.9078621214985979 40 evm.model.contig_2121.20 no hits & (original description: no original description) 0.9050529904484415 36 evm.model.contig_491.7 no hits & (original description: no original description) 0.9050390927804164 78 evm.model.contig_518.5 no hits & (original description: no original description) 0.9025677886505045 59 evm.model.contig_2219.4 (at3g09150 : 112.0) Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.; ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 224.0) & (original description: no original description) 0.9022474952795551 46 evm.model.contig_758.2 no hits & (original description: no original description) 0.9011762990089616 58 evm.model.contig_532.10 (at2g32480 : 195.0) Metalloprotease essential for plastid development. Located in the inner membrane of chloroplasts.; ARABIDOPSIS SERIN PROTEASE (ARASP); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis, chloroplast organization; LOCATED IN: chloroplast, plastid, chloroplast inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: Peptidase M50 family protein (TAIR:AT1G05140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 390.0) & (original description: no original description) 0.9000809161993549 88 evm.model.contig_662.2 (at3g01090 : 169.0) encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase; SNF1 kinase homolog 10 (KIN10); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q02723|rkin1_secce : 162.0) Carbon catabolite derepressing protein kinase (EC 2.7.11.1) - Secale cereale (Rye) & (reliability: 332.0) & (original description: no original description) 0.898813144969919 79 evm.model.contig_4438.9 no hits & (original description: no original description) 0.8982195734407954 75 evm.model.contig_2293.10 no hits & (original description: no original description) 0.8976167541933879 64 evm.model.contig_2271.9 no hits & (original description: no original description) 0.8969090148577622 68 evm.model.contig_4441.1 no hits & (original description: no original description) 0.8926663247123073 67 evm.model.contig_493.29 no hits & (original description: no original description) 0.8915272604244394 80 evm.model.contig_2016.2 no hits & (original description: no original description) 0.888942457533291 57 evm.model.contig_2354.2 (p51061|capp2_soybn : 700.0) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase) (PEPC) - Glycine max (Soybean) & (at1g53310 : 694.0) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.; phosphoenolpyruvate carboxylase 1 (PPC1); FUNCTIONS IN: protein binding, phosphoenolpyruvate carboxylase activity; INVOLVED IN: response to salt stress, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 3 (TAIR:AT3G14940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1388.0) & (original description: no original description) 0.8883551173225671 68 evm.model.contig_469.2 no hits & (original description: no original description) 0.8882592413417254 67 evm.model.contig_3421.1 (at3g54890 : 82.4) Encodes a component of the light harvesting complex associated with photosystem I.; photosystem I light harvesting complex gene 1 (LHCA1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, photosynthesis, light harvesting in photosystem I, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, chloroplast, plastoglobule, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT2G40100.1); Has 2134 Blast hits to 2063 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1854; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description) 0.887639135437012 88 evm.model.contig_4406.7 no hits & (original description: no original description) 0.8859665754312963 94 evm.model.contig_2502.19 (at1g74470 : 564.0) Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate.; Pyridine nucleotide-disulphide oxidoreductase family protein; FUNCTIONS IN: geranylgeranyl reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Geranylgeranyl reductase (InterPro:IPR010253), Geranylgeranyl reductase, plant/cyanobacteria (InterPro:IPR011774), Geranylgeranyl reductase, plant/prokaryotic (InterPro:IPR011777); Has 4540 Blast hits to 4539 proteins in 1185 species: Archae - 562; Bacteria - 2644; Metazoa - 5; Fungi - 25; Plants - 302; Viruses - 0; Other Eukaryotes - 1002 (source: NCBI BLink). & (reliability: 1128.0) & (original description: no original description) 0.8858478885879887 86 evm.model.contig_2044.17 no hits & (original description: no original description) 0.8848556514481485 65 evm.model.contig_3495.2 (at1g09340 : 335.0) Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.; chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink). & (reliability: 670.0) & (original description: no original description) 0.8828691162492933 66 evm.model.contig_2052.9 (at4g17740 : 175.0) Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9160 Blast hits to 9150 proteins in 1973 species: Archae - 0; Bacteria - 5658; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description) 0.8828056895500339 67 evm.model.contig_2062.19 (at3g24430 : 234.0) encodes a MRP-like protein with a nucleotide-binding domain.; HIGH-CHLOROPHYLL-FLUORESCENCE 101 (HCF101); FUNCTIONS IN: ATP binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mrp, conserved site (InterPro:IPR000808), Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376), Protein of unknown function DUF59 (InterPro:IPR002744), ATPase-like, ParA/MinD (InterPro:IPR019591); BEST Arabidopsis thaliana protein match is: IND1(iron-sulfur protein required for NADH dehydrogenase)-like (TAIR:AT4G19540.1); Has 16372 Blast hits to 16340 proteins in 2775 species: Archae - 600; Bacteria - 10162; Metazoa - 436; Fungi - 428; Plants - 202; Viruses - 0; Other Eukaryotes - 4544 (source: NCBI BLink). & (reliability: 468.0) & (original description: no original description) 0.8823005425337376 69 evm.model.contig_479.22 no hits & (original description: no original description) 0.8818398533333962 100 evm.model.contig_852.1 no hits & (original description: no original description) 0.8817031409653316 71 evm.model.contig_2142.1 no hits & (original description: no original description) 0.8816532957997781 99 evm.model.contig_3392.1 no hits & (original description: no original description) 0.8814677311355159 74 evm.model.contig_2062.20 (at3g24430 : 154.0) encodes a MRP-like protein with a nucleotide-binding domain.; HIGH-CHLOROPHYLL-FLUORESCENCE 101 (HCF101); FUNCTIONS IN: ATP binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mrp, conserved site (InterPro:IPR000808), Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376), Protein of unknown function DUF59 (InterPro:IPR002744), ATPase-like, ParA/MinD (InterPro:IPR019591); BEST Arabidopsis thaliana protein match is: IND1(iron-sulfur protein required for NADH dehydrogenase)-like (TAIR:AT4G19540.1); Has 16372 Blast hits to 16340 proteins in 2775 species: Archae - 600; Bacteria - 10162; Metazoa - 436; Fungi - 428; Plants - 202; Viruses - 0; Other Eukaryotes - 4544 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description) 0.8809934130357948 75 evm.model.contig_493.18 no hits & (original description: no original description) 0.8809516994621942 76 evm.model.contig_3802.1 no hits & (original description: no original description) 0.8803784267522705 94 evm.model.contig_4398.17 no hits & (original description: no original description) 0.8802789781580154 80 evm.model.contig_2468.7 no hits & (original description: no original description) 0.8789362681875179 88 evm.model.contig_2347.10 no hits & (original description: no original description) 0.8787405845366721 84 evm.model.contig_2025.70 no hits & (original description: no original description) 0.8787034383490337 85 evm.model.contig_2086.1 (at5g13410 : 221.0) FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G19830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 442.0) & (original description: no original description) 0.8775093898743721 90 evm.model.contig_4456.24 (q42684|sodm_chlre : 233.0) Superoxide dismutase [Mn], mitochondrial precursor (EC 1.15.1.1) - Chlamydomonas reinhardtii & (at3g10920 : 142.0) manganese superoxide dismutase (MSD1); manganese superoxide dismutase 1 (MSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding, metal ion binding; INVOLVED IN: response to zinc ion, response to salt stress, defense response to bacterium, removal of superoxide radicals, embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Iron/manganese superoxide dismutase family protein (TAIR:AT3G56350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description) 0.8771919402521349 91 evm.model.contig_4604.1 no hits & (original description: no original description) 0.876830064833643 92 evm.model.contig_3422.6 no hits & (original description: no original description) 0.8748742058933958 93 evm.model.contig_2293.14 no hits & (original description: no original description) 0.8741947654285493 95 evm.model.contig_2146.16 no hits & (original description: no original description) 0.8724736106391554 99 evm.model.contig_2090.8 (at3g20870 : 120.0) ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G08650.2); Has 3662 Blast hits to 3630 proteins in 1201 species: Archae - 124; Bacteria - 2163; Metazoa - 678; Fungi - 116; Plants - 147; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.8722911617034281 100