Sequence Description Alias PCC hrr evm.model.contig_2316.5 no hits & (original description: no original description) 0.9373906478531919 16 evm.model.contig_3403.8 no hits & (original description: no original description) 0.935722944559738 7 evm.model.contig_3618.1 no hits & (original description: no original description) 0.9278054842797665 10 evm.model.contig_2348.6 no hits & (original description: no original description) 0.9241116445098259 15 evm.model.contig_2123.5 no hits & (original description: no original description) 0.9218912308153746 13 evm.model.contig_3487.7 (at5g21920 : 102.0) YLMG2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425); BEST Arabidopsis thaliana protein match is: YGGT family protein (TAIR:AT4G27990.1). & (reliability: 204.0) & (original description: no original description) 0.9193781765917745 95 evm.model.contig_534.3 no hits & (original description: no original description) 0.9179012866484082 52 evm.model.contig_2049.7 no hits & (original description: no original description) 0.9167385649568832 9 evm.model.contig_502.5 no hits & (original description: no original description) 0.9149588657729426 9 evm.model.contig_4402.12 no hits & (original description: no original description) 0.9104182118201141 11 evm.model.contig_3624.2 (at3g47590 : 174.0) alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: BAAT/Acyl-CoA thioester hydrolase C-terminal (InterPro:IPR014940); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G29840.1); Has 4006 Blast hits to 4003 proteins in 1107 species: Archae - 84; Bacteria - 2507; Metazoa - 7; Fungi - 75; Plants - 235; Viruses - 7; Other Eukaryotes - 1091 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description) 0.9100915655957988 54 evm.model.contig_4422.5 no hits & (original description: no original description) 0.9087930289434686 27 evm.model.contig_4410.10 (at3g44620 : 135.0) protein tyrosine phosphatases;protein tyrosine phosphatases; FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase/arsenate reductase (InterPro:IPR000106), Protein-tyrosine phosphatase, low molecular weight (InterPro:IPR017867). & (reliability: 270.0) & (original description: no original description) 0.9069442974349525 20 evm.model.contig_713.2 no hits & (original description: no original description) 0.9055481771775371 68 evm.model.contig_2121.14 (at1g22800 : 126.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 2362 Blast hits to 2362 proteins in 955 species: Archae - 8; Bacteria - 1684; Metazoa - 119; Fungi - 106; Plants - 46; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink). & (reliability: 252.0) & (original description: no original description) 0.9038418860995031 20 evm.model.contig_2291.5 (at1g76050 : 165.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: shoot, leaf lamina base, stem, embryo, leaf whorl; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, RluC/RluD (InterPro:IPR006225), Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G19440.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 330.0) & (original description: no original description) 0.903810130624185 71 evm.model.contig_2288.2 (at5g24850 : 377.0) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.; cryptochrome 3 (CRY3); FUNCTIONS IN: FMN binding, DNA binding, DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome, DASH (InterPro:IPR014133), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: photolyase/blue-light receptor 2 (TAIR:AT2G47590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q651u1|cryd_orysa : 374.0) Cryptochrome DASH, chloroplast/mitochondrial precursor - Oryza sativa (Rice) & (reliability: 754.0) & (original description: no original description) 0.9035577192441124 55 evm.model.contig_4541.3 no hits & (original description: no original description) 0.9005136919645872 28 evm.model.contig_2707.5 no hits & (original description: no original description) 0.8992510946742709 29 evm.model.contig_4477.11 (at4g24820 : 322.0) 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), 26S proteasome, regulatory subunit Rpn7 (InterPro:IPR019585); BEST Arabidopsis thaliana protein match is: 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (TAIR:AT3G61140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q8w425|psmd6_orysa : 309.0) 26S proteasome non-ATPase regulatory subunit 6 (26S proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) - Oryza sativa (Rice) & (reliability: 644.0) & (original description: no original description) 0.8984818746340123 81 evm.model.contig_2048.7 no hits & (original description: no original description) 0.8977425050051449 76 evm.model.contig_2198.6 no hits & (original description: no original description) 0.8953922720229943 35 evm.model.contig_441.29 no hits & (original description: no original description) 0.891879144685854 55 evm.model.contig_4515.2 (at4g33370 : 389.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, CCHC-type (InterPro:IPR001878), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD-box protein abstrakt, putative (TAIR:AT5G51280.1); Has 45034 Blast hits to 44312 proteins in 3130 species: Archae - 817; Bacteria - 23057; Metazoa - 6215; Fungi - 4847; Plants - 2647; Viruses - 8; Other Eukaryotes - 7443 (source: NCBI BLink). & (p46942|db10_nicsy : 196.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 778.0) & (original description: no original description) 0.8900022041497737 49 evm.model.contig_473.4 (at5g08470 : 255.0) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.; peroxisome 1 (PEX1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Aspartate decarboxylase-like fold (InterPro:IPR009010), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 45022 Blast hits to 26157 proteins in 3042 species: Archae - 1897; Bacteria - 15808; Metazoa - 7500; Fungi - 5597; Plants - 4311; Viruses - 29; Other Eukaryotes - 9880 (source: NCBI BLink). & (p54774|cdc48_soybn : 198.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 510.0) & (original description: no original description) 0.8878614596335973 69 evm.model.contig_2030.2 no hits & (original description: no original description) 0.8854551052480004 49 evm.model.contig_4418.6 no hits & (original description: no original description) 0.8840042427407317 50 evm.model.contig_664.4 no hits & (original description: no original description) 0.8833886898689298 97 evm.model.contig_4660.1 no hits & (original description: no original description) 0.8829022646364297 52 evm.model.contig_2437.1 no hits & (original description: no original description) 0.881581176464195 79 evm.model.contig_637.6 no hits & (original description: no original description) 0.8814147019249743 56 evm.model.contig_2049.2 (at2g29360 : 137.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 124543 Blast hits to 124288 proteins in 3623 species: Archae - 1000; Bacteria - 81334; Metazoa - 5904; Fungi - 6580; Plants - 2878; Viruses - 5; Other Eukaryotes - 26842 (source: NCBI BLink). & (q949m2|fabg4_brana : 102.0) 3-oxoacyl-[acyl-carrier-protein] reductase 4 (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 4) (Fragment) - Brassica napus (Rape) & (reliability: 266.0) & (original description: no original description) 0.8808385931965665 59 evm.model.contig_4541.4 no hits & (original description: no original description) 0.880480487598273 74 evm.model.contig_526.4 (at1g30550 : 163.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: RNA capping, RNA methylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA cap guanine-N2 methyltransferase (InterPro:IPR019012); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G45231.2); Has 993 Blast hits to 983 proteins in 439 species: Archae - 68; Bacteria - 468; Metazoa - 130; Fungi - 137; Plants - 48; Viruses - 3; Other Eukaryotes - 139 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description) 0.8800481652495489 63 evm.model.contig_30.1 no hits & (original description: no original description) 0.878986428743654 64 evm.model.contig_4408.18 no hits & (original description: no original description) 0.8788913099313754 73 evm.model.contig_3388.3 no hits & (original description: no original description) 0.8755187366138353 90 evm.model.contig_3482.2 (at3g45830 : 159.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description) 0.8746439450117719 100 evm.model.contig_2277.10 (at5g26040 : 105.0) Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins.; histone deacetylase 2 (HDA2); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8459 Blast hits to 8281 proteins in 1419 species: Archae - 213; Bacteria - 3093; Metazoa - 1435; Fungi - 484; Plants - 429; Viruses - 0; Other Eukaryotes - 2805 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description) 0.8743405892957083 73 evm.model.contig_2343.13 no hits & (original description: no original description) 0.872043640634739 90 evm.model.contig_2179.3 no hits & (original description: no original description) 0.8720110633287973 80 evm.model.contig_779.3 (q9zsd6|aspg_luplu : 162.0) L-asparaginase precursor (EC 3.5.1.1) (L-asparagine amidohydrolase) [Contains: L-asparaginase subunit alpha; L-asparaginase subunit beta] - Lupinus luteus (European yellow lupin) & (at5g08100 : 145.0) N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description) 0.8694584174490522 87 evm.model.contig_2122.2 no hits & (original description: no original description) 0.8664750922452432 95