Sequence Description Alias PCC hrr evm.model.contig_442.9 (at1g04950 : 90.5) Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.; TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description) 0.9005432333800716 1 evm.model.contig_2291.4 no hits & (original description: no original description) 0.8819641054245297 10 evm.model.contig_4460.3 no hits & (original description: no original description) 0.8805043981962583 20 evm.model.contig_2025.16 (at5g01650 : 83.6) Tautomerase/MIF superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflammatory response, response to other organism; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: Tautomerase/MIF superfamily protein (TAIR:AT5G57170.2); Has 820 Blast hits to 820 proteins in 207 species: Archae - 0; Bacteria - 141; Metazoa - 384; Fungi - 26; Plants - 141; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.8697315926257811 4 evm.model.contig_4402.12 no hits & (original description: no original description) 0.8677562784409467 49 evm.model.contig_2125.3 (at3g48420 : 265.0) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G39970.1); Has 12560 Blast hits to 12559 proteins in 2179 species: Archae - 78; Bacteria - 10284; Metazoa - 135; Fungi - 145; Plants - 385; Viruses - 3; Other Eukaryotes - 1530 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description) 0.8677412758276543 48 evm.model.contig_4403.5 no hits & (original description: no original description) 0.866732448236799 45 evm.model.contig_579.2 no hits & (original description: no original description) 0.8651660581822518 89 evm.model.contig_2033.19 (at5g16400 : 94.0) Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma.; thioredoxin F2 (TRXF2); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin F-type 1 (TAIR:AT3G02730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o48897|trxf_brana : 92.8) Thioredoxin F-type, chloroplast precursor (TRX-F) - Brassica napus (Rape) & (reliability: 188.0) & (original description: no original description) 0.8547931779558368 30 evm.model.contig_4448.6 (at4g30580 : 170.0) Encodes a plastidic lysophosphatidic acid acyltransferase (LPAAT). Is critical for chloroplasts phosphatidic acid biosynthesis. The null allele is embryo lethal.; ATS2; FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: metabolic process, phosphatidylglycerol biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), 1-acyl-sn-glycerol-3-phosphate acyltransferase (InterPro:IPR004552); BEST Arabidopsis thaliana protein match is: Phospholipid/glycerol acyltransferase family protein (TAIR:AT3G05510.1); Has 12571 Blast hits to 12571 proteins in 2517 species: Archae - 0; Bacteria - 9130; Metazoa - 376; Fungi - 153; Plants - 151; Viruses - 0; Other Eukaryotes - 2761 (source: NCBI BLink). & (q9lly4|lpat1_brana : 169.0) 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor (EC 2.3.1.51) - Brassica napus (Rape) & (reliability: 340.0) & (original description: no original description) 0.8532264726767868 40 evm.model.contig_2068.20 (at5g47030 : 122.0) Encodes the mitochondrial ATP synthase subunit delta.; ATPase, F1 complex, delta/epsilon subunit; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, zinc ion binding; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion, mitochondrial proton-transporting ATP synthase complex, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, delta/epsilon subunit, N-terminal (InterPro:IPR020546), ATPase, F1 complex, delta/epsilon subunit (InterPro:IPR001469); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q40089|atp4_ipoba : 117.0) ATP synthase delta' chain, mitochondrial precursor (EC 3.6.3.14) - Ipomoea batatas (Sweet potato) (Batate) & (reliability: 244.0) & (original description: no original description) 0.8527510895390393 77 evm.model.contig_4405.1 (at5g35170 : 132.0) adenylate kinase family protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Domain of unknown function DUF1995 (InterPro:IPR018962), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenosine monophosphate kinase (TAIR:AT5G47840.1); Has 15140 Blast hits to 14955 proteins in 5116 species: Archae - 100; Bacteria - 10012; Metazoa - 1330; Fungi - 481; Plants - 477; Viruses - 0; Other Eukaryotes - 2740 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description) 0.8497570283946723 89 evm.model.contig_4405.8 no hits & (original description: no original description) 0.8490767030201926 64 evm.model.contig_3390.2 no hits & (original description: no original description) 0.8415034117343821 30 evm.model.contig_2494.21 (at1g26761 : 159.0) Arabinanase/levansucrase/invertase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description) 0.830837280061574 42 evm.model.contig_2277.10 (at5g26040 : 105.0) Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins.; histone deacetylase 2 (HDA2); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8459 Blast hits to 8281 proteins in 1419 species: Archae - 213; Bacteria - 3093; Metazoa - 1435; Fungi - 484; Plants - 429; Viruses - 0; Other Eukaryotes - 2805 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description) 0.8218826202677488 92 evm.model.contig_3389.1 (at4g22890 : 145.0) Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).; PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 112 Blast hits to 112 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description) 0.818673765968868 77 evm.model.contig_3715.3 (at1g48420 : 174.0) Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. There is conflicting evidence on its 1-aminocyclopropane-1-carboxylate deaminase activity. Involved in regulating ethylene levels.; D-cysteine desulfhydrase (D-CDES); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate deaminase activity, D-cysteine desulfhydrase activity, cobalt ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, ethylene biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Pyridoxal phosphate-dependent deaminase (InterPro:IPR005966); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT3G26115.1); Has 2814 Blast hits to 2813 proteins in 938 species: Archae - 31; Bacteria - 1992; Metazoa - 30; Fungi - 102; Plants - 101; Viruses - 0; Other Eukaryotes - 558 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description) 0.8138305562403589 76 evm.model.contig_2281.17 no hits & (original description: no original description) 0.8034791859462962 100