Sequence Description Alias PCC hrr evm.model.contig_2285.2 (at2g28305 : 84.0) LONELY GUY 1 (LOG1); CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 5303 Blast hits to 5301 proteins in 1556 species: Archae - 26; Bacteria - 3660; Metazoa - 10; Fungi - 132; Plants - 396; Viruses - 0; Other Eukaryotes - 1079 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.9450306757698441 4 evm.model.contig_3452.7 (at3g55160 : 117.0) unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description) 0.9439643080522029 13 evm.model.contig_503.1 no hits & (original description: no original description) 0.9308899960450666 7 evm.model.contig_2116.2 no hits & (original description: no original description) 0.9307865310340211 6 evm.model.contig_2284.20 (at5g53770 : 133.0) Nucleotidyltransferase family protein; FUNCTIONS IN: nucleic acid binding, nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT4G00060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description) 0.9282624364846582 62 evm.model.contig_3486.4 (at3g19830 : 179.0) NTMC2T5.2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: N-terminal-transmembrane-C2 domain type 5.1 (TAIR:AT1G50260.1); Has 1308 Blast hits to 1143 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 350; Fungi - 235; Plants - 647; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). & (reliability: 358.0) & (original description: no original description) 0.9257371352091043 8 evm.model.contig_2008.5 no hits & (original description: no original description) 0.9211824842953352 37 evm.model.contig_496.14 (at1g66900 : 123.0) alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF818 (InterPro:IPR008536); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G38220.3); Has 3645 Blast hits to 3636 proteins in 755 species: Archae - 4; Bacteria - 1186; Metazoa - 604; Fungi - 183; Plants - 290; Viruses - 6; Other Eukaryotes - 1372 (source: NCBI BLink). & (reliability: 246.0) & (original description: no original description) 0.9205387924405097 54 evm.model.contig_3573.8 (at4g11720 : 107.0) Encodes HAP2 with the following predicted motifs: an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2 is expressed only in the haploid sperm and is required for pollen tube guidance and fertilization. Predominantly localized to sperm endoplasmic reticulum membranes. May also reside in other endomembranes, including the plasma membrane.; HAPLESS 2 (HAP2); CONTAINS InterPro DOMAIN/s: Generative cell specific-1, HAP2-GCS1 (InterPro:IPR018928); Has 2122 Blast hits to 1565 proteins in 270 species: Archae - 6; Bacteria - 421; Metazoa - 806; Fungi - 82; Plants - 227; Viruses - 5; Other Eukaryotes - 575 (source: NCBI BLink). & (gnl|cdd|68872 : 92.0) no description available & (reliability: 214.0) & (original description: no original description) 0.9201043871999077 59 evm.model.contig_444.32 (original description: no original description) 0.9180644956540813 77 evm.model.contig_2059.1 (at3g63140 : 146.0) Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.; chloroplast stem-loop binding protein of 41 kDa (CSP41A); FUNCTIONS IN: mRNA binding, poly(U) RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast RNA binding (TAIR:AT1G09340.1); Has 1047 Blast hits to 1047 proteins in 372 species: Archae - 70; Bacteria - 649; Metazoa - 6; Fungi - 5; Plants - 106; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description) 0.9148780951813266 51 evm.model.contig_2141.8 no hits & (original description: no original description) 0.9118765458455691 31 evm.model.contig_2156.7 (at1g54250 : 83.6) One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II and V; homologous to budding yeast RPB8. Probably redundant with At3g59600.; NRPB8A; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase, Rpb8 (InterPro:IPR005570); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb8 (TAIR:AT3G59600.1); Has 513 Blast hits to 511 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 205; Plants - 84; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.9117223817468555 18 evm.model.contig_4398.12 no hits & (original description: no original description) 0.9097624114966486 31 evm.model.contig_2347.9 (at5g63290 : 308.0) Radical SAM superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Putative oxygen-independent coproporphyrinogen III oxidase (InterPro:IPR004559), HemN, C-terminal (InterPro:IPR010723), Radical SAM (InterPro:IPR007197); Has 10146 Blast hits to 10146 proteins in 2456 species: Archae - 113; Bacteria - 8401; Metazoa - 78; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 1513 (source: NCBI BLink). & (reliability: 616.0) & (original description: no original description) 0.9073039846229034 70 evm.model.contig_2051.12 (at1g73180 : 247.0) Eukaryotic translation initiation factor eIF2A family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-2A (InterPro:IPR011387), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: translation initiation factor 3B1 (TAIR:AT5G27640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56821|if39_tobac : 81.3) Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) - Nicotiana tabacum (Common tobacco) & (reliability: 494.0) & (original description: no original description) 0.9059173102109437 81 evm.model.contig_4591.1 no hits & (original description: no original description) 0.9057778482137772 71 evm.model.contig_2121.17 no hits & (original description: no original description) 0.9020647788099622 44 evm.model.contig_2066.4 (original description: no original description) 0.9014880792178815 83 evm.model.contig_3729.2 (at4g17740 : 286.0) Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9160 Blast hits to 9150 proteins in 1973 species: Archae - 0; Bacteria - 5658; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink). & (reliability: 572.0) & (original description: no original description) 0.9014083873489621 37 evm.model.contig_2089.3 (at5g58370 : 87.8) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: barrier septum formation; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YsxC (InterPro:IPR019987); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G22870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description) 0.8995540333222979 52 evm.model.contig_2044.17 no hits & (original description: no original description) 0.8991310449895051 41 evm.model.contig_836.2 (at5g15640 : 109.0) Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G72820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 218.0) & (original description: no original description) 0.8989909681226539 86 evm.model.contig_699.4 (p54774|cdc48_soybn : 216.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g09840 : 214.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (reliability: 404.0) & (original description: no original description) 0.8983629737177927 44 evm.model.contig_2020.3 no hits & (original description: no original description) 0.898039312540639 94 evm.model.contig_2141.9 no hits & (original description: no original description) 0.8976631909279524 48 evm.model.contig_4427.4 no hits & (original description: no original description) 0.8967213134186567 49 evm.model.contig_583.1 no hits & (original description: no original description) 0.8917787288842948 57 evm.model.contig_477.3 (at2g31170 : 303.0) SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, DALR (InterPro:IPR015273), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 10676 Blast hits to 10676 proteins in 2860 species: Archae - 252; Bacteria - 6117; Metazoa - 332; Fungi - 154; Plants - 139; Viruses - 3; Other Eukaryotes - 3679 (source: NCBI BLink). & (reliability: 606.0) & (original description: no original description) 0.8890444983328498 89 evm.model.contig_479.21 no hits & (original description: no original description) 0.889027553721932 67 evm.model.contig_2172.4 no hits & (original description: no original description) 0.8866592345637001 72 evm.model.contig_2396.1 no hits & (original description: no original description) 0.8852629452624278 100 evm.model.contig_4447.8 no hits & (original description: no original description) 0.8824244023043222 90 evm.model.contig_2468.7 no hits & (original description: no original description) 0.8814417477117146 94