Sequence Description Alias PCC hrr evm.model.contig_490.5 (at3g08943 : 518.0) ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08947.1); Has 1770 Blast hits to 1697 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 578; Plants - 273; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink). & (reliability: 1036.0) & (original description: no original description) 0.971004220619152 23 evm.model.contig_643.4 (at2g43090 : 213.0) Aconitase/3-isopropylmalate dehydratase protein; FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928); BEST Arabidopsis thaliana protein match is: isopropylmalate isomerase 1 (TAIR:AT3G58990.1). & (reliability: 410.0) & (original description: no original description) 0.9613753619323355 22 evm.model.contig_3583.1 no hits & (original description: no original description) 0.9591245296189056 32 evm.model.contig_2706.9 (at3g22660 : 91.7) rRNA processing protein-related; CONTAINS InterPro DOMAIN/s: Eukaryotic rRNA processing (InterPro:IPR008610); Has 1021 Blast hits to 939 proteins in 244 species: Archae - 0; Bacteria - 62; Metazoa - 355; Fungi - 209; Plants - 58; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). & (reliability: 183.4) & (original description: no original description) 0.9547105107741739 9 evm.model.contig_850.2 (at5g14200 : 424.0) The AtIMD1 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. Encodes methylthioalkylmalate dehydrogenase. Involved in glucosinolate biosynthesis, in methionine chain elongation.; isopropylmalate dehydrogenase 1; FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: glucosinolate biosynthetic process, leucine biosynthetic process, response to salt stress, metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isopropylmalate dehydrogenase 3 (TAIR:AT1G31180.1); Has 15391 Blast hits to 15391 proteins in 2664 species: Archae - 400; Bacteria - 8416; Metazoa - 576; Fungi - 851; Plants - 241; Viruses - 0; Other Eukaryotes - 4907 (source: NCBI BLink). & (p29102|leu3_brana : 424.0) 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) - Brassica napus (Rape) & (reliability: 848.0) & (original description: no original description) 0.9546997950899467 37 evm.model.contig_4464.4 no hits & (original description: no original description) 0.9541807352520177 33 evm.model.contig_3444.4 no hits & (original description: no original description) 0.9529932958986179 86 evm.model.contig_3464.1 (at3g03060 : 297.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, zinc ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 38046 Blast hits to 31515 proteins in 3061 species: Archae - 1414; Bacteria - 11706; Metazoa - 8052; Fungi - 4459; Plants - 2737; Viruses - 110; Other Eukaryotes - 9568 (source: NCBI BLink). & (reliability: 594.0) & (original description: no original description) 0.9528515466589006 61 evm.model.contig_4422.10 (at5g51940 : 110.0) One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.; NRPB6A; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, DNA-dependent; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, 14-18kDa subunit, conserved site (InterPro:IPR020708), RNA polymerase subunit, RPB6/omega (InterPro:IPR012293), RNA polymerase Rpb6 (InterPro:IPR006110), DNA-directed RNA polymerase, 14-18kDa subunit (InterPro:IPR006111); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb6 (TAIR:AT2G04630.1); Has 907 Blast hits to 906 proteins in 313 species: Archae - 223; Bacteria - 0; Metazoa - 99; Fungi - 194; Plants - 79; Viruses - 16; Other Eukaryotes - 296 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description) 0.952815811624932 60 evm.model.contig_2082.2 no hits & (original description: no original description) 0.9516736105765848 13 evm.model.contig_454.15 (at2g37990 : 92.4) ribosome biogenesis regulatory protein (RRS1) family protein; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis regulatory protein (InterPro:IPR007023); Has 425 Blast hits to 423 proteins in 207 species: Archae - 1; Bacteria - 2; Metazoa - 151; Fungi - 137; Plants - 58; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description) 0.9491117947429218 45 evm.model.contig_446.6 no hits & (original description: no original description) 0.9456276188108863 22 evm.model.contig_3514.3 no hits & (original description: no original description) 0.9440630617030432 88 evm.model.contig_2286.16 (p50246|sahh_medsa : 622.0) Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) - Medicago sativa (Alfalfa) & (at4g13940 : 618.0) Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.; HOMOLOGY-DEPENDENT GENE SILENCING 1 (HOG1); FUNCTIONS IN: adenosylhomocysteinase activity; INVOLVED IN: methylation-dependent chromatin silencing, one-carbon metabolic process, posttranscriptional gene silencing, embryo development ending in seed dormancy; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 34 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), S-adenosyl-L-homocysteine hydrolase, conserved site (InterPro:IPR020082), NAD(P)-binding domain (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: S-adenosyl-l-homocysteine (SAH) hydrolase 2 (TAIR:AT3G23810.1); Has 6788 Blast hits to 6786 proteins in 1444 species: Archae - 223; Bacteria - 2243; Metazoa - 514; Fungi - 135; Plants - 203; Viruses - 0; Other Eukaryotes - 3470 (source: NCBI BLink). & (reliability: 1236.0) & (original description: no original description) 0.9439227901781028 32 evm.model.contig_3677.1 (o22342|adt1_goshi : 260.0) ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) - Gossypium hirsutum (Upland cotton) & (at3g08580 : 258.0) mitochondrial ADP/ATP carrier; ADP/ATP carrier 1 (AAC1); FUNCTIONS IN: binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 19858 Blast hits to 12534 proteins in 484 species: Archae - 0; Bacteria - 0; Metazoa - 8967; Fungi - 5060; Plants - 3882; Viruses - 0; Other Eukaryotes - 1949 (source: NCBI BLink). & (reliability: 516.0) & (original description: no original description) 0.9435123973338997 44 evm.model.contig_3383.12 no hits & (original description: no original description) 0.9426982060891834 61 evm.model.contig_3482.3 (at1g09150 : 159.0) pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Translation-associated RNA-binding, predicted (InterPro:IPR016437), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 885 Blast hits to 883 proteins in 291 species: Archae - 148; Bacteria - 0; Metazoa - 325; Fungi - 155; Plants - 86; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description) 0.9425557346086767 95 evm.model.contig_3401.16 (at5g06060 : 206.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29290.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q75kh3|grdh_orysa : 115.0) Glucose and ribitol dehydrogenase homolog (EC 1.1.1.-) - Oryza sativa (Rice) & (reliability: 412.0) & (original description: no original description) 0.9410492274029374 35 evm.model.contig_2286.25 no hits & (original description: no original description) 0.9407714345433382 21 evm.model.contig_468.5 no hits & (original description: no original description) 0.9376456462168546 98 evm.model.contig_457.10 no hits & (original description: no original description) 0.9362151427842036 47 evm.model.contig_3699.3 no hits & (original description: no original description) 0.935938925725534 30 evm.model.contig_2143.2 no hits & (original description: no original description) 0.935831838008373 64 evm.model.contig_2077.21 (at3g12990 : 94.0) Encodes a 3'-5' exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis.; ribonuclease PH45A (RRP45a); CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: 3'-5'-exoribonuclease family protein (TAIR:AT3G60500.3). & (reliability: 188.0) & (original description: no original description) 0.930531003011347 43 evm.model.contig_3387.3 (at2g37600 : 125.0) Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT3G53740.4); Has 756 Blast hits to 755 proteins in 263 species: Archae - 0; Bacteria - 0; Metazoa - 355; Fungi - 140; Plants - 140; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). & (p52866|rl36_dauca : 103.0) 60S ribosomal protein L36 - Daucus carota (Carrot) & (reliability: 250.0) & (original description: no original description) 0.930138490231868 45 evm.model.contig_3750.1 no hits & (original description: no original description) 0.9264155332456627 52 evm.model.contig_2174.1 (p41918|rana1_tobac : 303.0) GTP-binding nuclear protein Ran-A1 - Nicotiana tabacum (Common tobacco) & (at5g20010 : 300.0) A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.; RAS-related nuclear protein-1 (RAN-1); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, response to salt stress, protein import into nucleus; LOCATED IN: apoplast, cell wall, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAN GTPase 3 (TAIR:AT5G55190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 600.0) & (original description: no original description) 0.9251439085460159 55 evm.model.contig_445.10 (at2g37410 : 160.0) Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway.; translocase inner membrane subunit 17-2 (TIM17-2); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, protein import into mitochondrial inner membrane; LOCATED IN: mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: translocase inner membrane subunit 17-1 (TAIR:AT1G20350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 320.0) & (original description: no original description) 0.9232392646649288 91 evm.model.contig_2149.19 no hits & (original description: no original description) 0.9226894344247225 59 evm.model.contig_446.5 (original description: no original description) 0.9207647555865005 98 evm.model.contig_3394.1 no hits & (original description: no original description) 0.9146017908853641 80 evm.model.contig_4481.6 (gnl|cdd|68872 : 134.0) no description available & (at1g26110 : 99.0) Encodes Decapping 5, required for mRNA decapping, P-body formation and translational repression during postembryonic development.; decapping 5 (DCP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of translation, deadenylation-independent decapping of nuclear-transcribed mRNA, cytoplasmic mRNA processing body assembly; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DFDF motif (InterPro:IPR019050), FFD/TFG box motif (InterPro:IPR019053); BEST Arabidopsis thaliana protein match is: decapping 5-like (TAIR:AT5G45330.1); Has 14874 Blast hits to 10327 proteins in 603 species: Archae - 12; Bacteria - 902; Metazoa - 6418; Fungi - 2978; Plants - 1226; Viruses - 261; Other Eukaryotes - 3077 (source: NCBI BLink). & (gnl|cdd|39774 : 86.3) no description available & (reliability: 198.0) & (original description: no original description) 0.9139701404959576 82 evm.model.contig_2031.21 (gnl|cdd|68872 : 102.0) no description available & (at4g26650 : 97.1) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55550.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q08937|roc2_nicsy : 85.5) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B) - Nicotiana sylvestris (Wood tobacco) & (reliability: 194.2) & (original description: no original description) 0.9137269304105099 83 evm.model.contig_4624.1 (at1g48850 : 470.0) embryo defective 1144 (EMB1144); FUNCTIONS IN: chorismate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate synthase, conserved site (InterPro:IPR020541), Chorismate synthase (InterPro:IPR000453); BEST Arabidopsis thaliana protein match is: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (TAIR:AT1G48860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 940.0) & (original description: no original description) 0.9120890012820737 87 evm.model.contig_2174.3 (at3g58180 : 202.0) ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: phycobilisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G62530.1); Has 1934 Blast hits to 1064 proteins in 388 species: Archae - 226; Bacteria - 670; Metazoa - 295; Fungi - 345; Plants - 90; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink). & (q2qlw3|dohhb_orysa : 199.0) Deoxyhypusine hydroxylase-B (EC 1.14.99.29) (Deoxyhypusine monooxygenase-B) - Oryza sativa (Rice) & (reliability: 404.0) & (original description: no original description) 0.911107746348797 89 evm.model.contig_2444.5 no hits & (original description: no original description) 0.9080020062481781 97 evm.model.contig_3414.3 (q6f2u9|syk_orysa : 605.0) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) - Oryza sativa (Rice) & (at3g11710 : 582.0) lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink). & (reliability: 1164.0) & (original description: no original description) 0.9076468059489827 99