Sequence Description Alias PCC hrr evm.model.contig_2262.2 (at5g22100 : 276.0) RNA cyclase family protein; FUNCTIONS IN: RNA-3'-phosphate cyclase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA 3'-terminal phosphate cyclase-like, conserved site (InterPro:IPR020719), RNA 3'-terminal phosphate cyclase-like (InterPro:IPR000228), RNA 3'-terminal phosphate cyclase, insert domain (InterPro:IPR013796), RNA 3'-terminal phosphate cyclase-like, eukaryotic (InterPro:IPR016443), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 552.0) & (original description: no original description) 0.9542716740206881 1 evm.model.contig_2502.4 no hits & (original description: no original description) 0.9510860864163868 2 evm.model.contig_2121.5 (gnl|cdd|68872 : 221.0) no description available & (at3g47450 : 102.0) Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. In Arabidopsis, mutant analyses show that this protein regulates growth and hormonal signaling in plants. It also attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence and cell death. This gene product is also involved in nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins, including RBCL, ClpP1, and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase, but, the synthase activity was later disproven. In addition, new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts.; NO ASSOCIATED 1 (NOA1); FUNCTIONS IN: GTPase activity; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G57180.1); Has 1589 Blast hits to 1531 proteins in 754 species: Archae - 6; Bacteria - 1199; Metazoa - 159; Fungi - 35; Plants - 109; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). & (q6ypg5|nos_orysa : 94.0) Putative nitric-oxide synthase (EC 1.14.13.39) - Oryza sativa (Rice) & (gnl|cdd|37260 : 85.5) no description available & (reliability: 204.0) & (original description: no original description) 0.9425910487033562 33 evm.model.contig_3426.14 (at1g16350 : 224.0) Aldolase-type TIM barrel family protein; FUNCTIONS IN: IMP dehydrogenase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: oxidation reduction, GMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79470.1); Has 13531 Blast hits to 12775 proteins in 2707 species: Archae - 178; Bacteria - 7353; Metazoa - 466; Fungi - 180; Plants - 86; Viruses - 2; Other Eukaryotes - 5266 (source: NCBI BLink). & (reliability: 448.0) & (original description: no original description) 0.9399202129472493 21 evm.model.contig_4523.5 (at1g72440 : 162.0) Encodes SLOW WALKER2 (SWA2), a NOC1/Mak21 homologue. Essential for coordinated cell cycle progression during female gametophyte development.; embryo sac development arrest 25 (EDA25); INVOLVED IN: polar nucleus fusion, embryo sac development; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 324.0) & (original description: no original description) 0.9374581340017435 23 evm.model.contig_2286.24 no hits & (original description: no original description) 0.9354585635743596 77 evm.model.contig_2273.14 (at2g38770 : 117.0) EMBRYO DEFECTIVE 2765 (EMB2765); LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 4121 Blast hits to 3614 proteins in 689 species: Archae - 125; Bacteria - 655; Metazoa - 959; Fungi - 1056; Plants - 630; Viruses - 0; Other Eukaryotes - 696 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description) 0.9300002231772666 19 evm.model.contig_2262.3 no hits & (original description: no original description) 0.9282688352801389 10 evm.model.contig_4465.5 (at1g60230 : 328.0) Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6934 Blast hits to 6928 proteins in 2336 species: Archae - 3; Bacteria - 5075; Metazoa - 1; Fungi - 1; Plants - 140; Viruses - 5; Other Eukaryotes - 1709 (source: NCBI BLink). & (reliability: 656.0) & (original description: no original description) 0.9277844323521672 72 evm.model.contig_2294.3 no hits & (original description: no original description) 0.9272295547838287 10 evm.model.contig_503.8 (at3g01120 : 407.0) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome.; METHIONINE OVERACCUMULATION 1 (MTO1); FUNCTIONS IN: cystathionine gamma-synthase activity; INVOLVED IN: methionine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G33320.1); Has 21364 Blast hits to 20702 proteins in 2452 species: Archae - 220; Bacteria - 11705; Metazoa - 241; Fungi - 842; Plants - 284; Viruses - 13; Other Eukaryotes - 8059 (source: NCBI BLink). & (reliability: 814.0) & (original description: no original description) 0.9265397112080291 61 evm.model.contig_3440.1 no hits & (original description: no original description) 0.9264686322741837 12 evm.model.contig_620.2 (at4g36390 : 156.0) Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, transferase activity, catalytic activity; INVOLVED IN: RNA modification, tRNA modification; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463), Methylthiotransferase, conserved site (InterPro:IPR020612), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT1G72090.1); Has 15610 Blast hits to 15591 proteins in 2425 species: Archae - 356; Bacteria - 9631; Metazoa - 288; Fungi - 1; Plants - 108; Viruses - 0; Other Eukaryotes - 5226 (source: NCBI BLink). & (q2r1u4|ck5p1_orysa : 153.0) CDK5RAP1-like protein - Oryza sativa (Rice) & (reliability: 312.0) & (original description: no original description) 0.9256721110597864 62 evm.model.contig_460.7 (at2g39140 : 87.8) Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins.; SUPPRESSOR OF VARIEGATION 1 (SVR1); CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), RNA-binding S4 (InterPro:IPR002942), Pseudouridine synthase, RsuA and RluB/E/F, conserved site (InterPro:IPR018496); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G43340.1); Has 12713 Blast hits to 12709 proteins in 2415 species: Archae - 0; Bacteria - 10639; Metazoa - 2; Fungi - 2; Plants - 70; Viruses - 0; Other Eukaryotes - 2000 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description) 0.9255332051813924 95 evm.model.contig_545.2 (at3g01160 : 240.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink). & (reliability: 480.0) & (original description: no original description) 0.924843430420802 47 evm.model.contig_3462.2 (at5g66470 : 140.0) RNA binding;GTP binding; FUNCTIONS IN: RNA binding, GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 2 (InterPro:IPR004044), K Homology, prokaryotic type (InterPro:IPR009019), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein Era (InterPro:IPR005662), GTP-binding protein, HSR1-related (InterPro:IPR002917), K homology-like, alpha/beta (InterPro:IPR015946); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G30960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o82626|erg_antma : 134.0) GTP-binding protein ERG - Antirrhinum majus (Garden snapdragon) & (reliability: 278.0) & (original description: no original description) 0.9238994035727587 16 evm.model.contig_445.4 (q7xzf7|gyra_orysa : 655.0) Probable DNA gyrase subunit A, chloroplast/mitochondrial precursor (EC 5.99.1.3) - Oryza sativa (Rice) & (at3g10690 : 652.0) DNA GYRASE A (GYRA); FUNCTIONS IN: DNA topoisomerase activity, catalytic activity, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA gyrase, subunit A (InterPro:IPR005743), DNA topoisomerase, type IIA, subunit A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), DNA topoisomerase, type IIA, central (InterPro:IPR013760), DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel (InterPro:IPR006691); BEST Arabidopsis thaliana protein match is: topoisomerase II (TAIR:AT3G23890.1); Has 22353 Blast hits to 21396 proteins in 3265 species: Archae - 84; Bacteria - 12907; Metazoa - 182; Fungi - 204; Plants - 111; Viruses - 99; Other Eukaryotes - 8766 (source: NCBI BLink). & (reliability: 1304.0) & (original description: no original description) 0.9222494550958499 17 evm.model.contig_4398.14 (q8h6b1|spt16_maize : 509.0) FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (Global transcription factor group C protein 102) - Zea mays (Maize) & (at4g10710 : 501.0) encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.; global transcription factor C (SPT16); INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: nuclear euchromatin, FACT complex, nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1747, eukaryote (InterPro:IPR013719), Peptidase M24, structural domain (InterPro:IPR000994), FACT complex subunit Spt16p/Cdc68p (InterPro:IPR013953); BEST Arabidopsis thaliana protein match is: GTC2 (TAIR:AT4G10670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1002.0) & (original description: no original description) 0.9208987542654309 18 evm.model.contig_3557.2 (at1g31660 : 275.0) CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). & (reliability: 550.0) & (original description: no original description) 0.920332041204504 38 evm.model.contig_568.2 no hits & (original description: no original description) 0.9158033540535826 21 evm.model.contig_2130.12 (at3g62910 : 423.0) Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.; ALBINO AND PALE GREEN (APG3); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, chloroplast organization; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT2G47020.1); Has 17224 Blast hits to 17222 proteins in 2820 species: Archae - 0; Bacteria - 10525; Metazoa - 262; Fungi - 197; Plants - 224; Viruses - 13; Other Eukaryotes - 6003 (source: NCBI BLink). & (reliability: 846.0) & (original description: no original description) 0.9155846068439865 43 evm.model.contig_2130.11 (at3g12080 : 186.0) embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding, EngA (InterPro:IPR016484), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46500 Blast hits to 25681 proteins in 2968 species: Archae - 249; Bacteria - 36237; Metazoa - 387; Fungi - 432; Plants - 421; Viruses - 0; Other Eukaryotes - 8774 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description) 0.9146360673836942 72 evm.model.contig_529.3 (at5g18570 : 291.0) Encodes AtObgC, a plant ortholog of bacterial Obg. AtObgC is a chloroplast-targeting GTPase essential for early embryogenesis. Mutations in this locus result in embryo lethality. The protein is dually localized in the stroma and the inner envelope membrane and is involved in thylakoid membrane biogenesis.; EMBRYO DEFECTIVE 269 (EMB269); FUNCTIONS IN: GTPase activity; INVOLVED IN: response to light stimulus, thylakoid membrane organization, embryo development, embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast stroma, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP-binding protein GTP1/OBG, C-terminal (InterPro:IPR015349), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07615.1); Has 23458 Blast hits to 23162 proteins in 3000 species: Archae - 644; Bacteria - 14053; Metazoa - 1121; Fungi - 826; Plants - 464; Viruses - 52; Other Eukaryotes - 6298 (source: NCBI BLink). & (reliability: 582.0) & (original description: no original description) 0.9133017757209497 24 evm.model.contig_527.4 (at1g71750 : 114.0) Encodes a protein with hypoxanthine-guanine-phosphoribosyltransferase activity. Unlike some related enzymes, it does not appear to act on xanthine in vitro. The enzyme catalyzes reactions occurring in both directions, but appears to prefer acting on guanine, followed by hypoxanthine, in vitro. The enzyme is likely to function in purine salvage pathways and appears to be important for seed germination.; Hypoxanthine-guanine phosphoribosyltransferase (HGPT); FUNCTIONS IN: transferase activity, hypoxanthine phosphoribosyltransferase activity; INVOLVED IN: guanine metabolic process, nucleoside metabolic process, seed germination, hypoxanthine metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hypoxanthine phosphoribosyl transferase (InterPro:IPR005904), Phosphoribosyltransferase (InterPro:IPR000836). & (reliability: 228.0) & (original description: no original description) 0.9117097724682535 55 evm.model.contig_3443.10 (original description: no original description) 0.9113586165128944 53 evm.model.contig_2499.8 no hits & (original description: no original description) 0.911002337109965 30 evm.model.contig_2140.1 (at5g26880 : 95.9) AGAMOUS-like 26; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537). & (reliability: 191.8) & (original description: no original description) 0.9085350387566837 52 evm.model.contig_4438.16 (at1g64600 : 99.0) methyltransferases;copper ion binding; FUNCTIONS IN: methyltransferase activity, copper ion binding; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein Rsm22, bacterial-type (InterPro:IPR015324), Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533); Has 735 Blast hits to 687 proteins in 272 species: Archae - 0; Bacteria - 212; Metazoa - 195; Fungi - 160; Plants - 44; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description) 0.9044118267945779 36 evm.model.contig_790.2 no hits & (original description: no original description) 0.903685340742575 87 evm.model.contig_4461.7 (at5g22010 : 331.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 662.0) & (original description: no original description) 0.9026667065065923 73 evm.model.contig_2013.1 (at5g08110 : 250.0) nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Ubiquitin supergroup (InterPro:IPR019955), Protein of unknown function DUF1998 (InterPro:IPR018973), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 14986 Blast hits to 14312 proteins in 2354 species: Archae - 833; Bacteria - 9982; Metazoa - 976; Fungi - 914; Plants - 633; Viruses - 5; Other Eukaryotes - 1643 (source: NCBI BLink). & (reliability: 500.0) & (original description: no original description) 0.9020401512857302 39 evm.model.contig_724.5 no hits & (original description: no original description) 0.9004817708842965 41 evm.model.contig_2093.1 no hits & (original description: no original description) 0.9003724521727979 42 evm.model.contig_3385.7 no hits & (original description: no original description) 0.897347594627028 44 evm.model.contig_4491.13 (at1g48175 : 92.0) embryo defective 2191 (emb2191); FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: tRNA arginine adenosine deaminase (TAIR:AT1G68720.1); Has 7475 Blast hits to 7473 proteins in 2425 species: Archae - 62; Bacteria - 5225; Metazoa - 126; Fungi - 224; Plants - 142; Viruses - 0; Other Eukaryotes - 1696 (source: NCBI BLink). & (reliability: 184.0) & (original description: no original description) 0.897112475592998 46 evm.model.contig_2624.4 (original description: no original description) 0.896816970884094 47 evm.model.contig_2054.9 (at3g47420 : 107.0) Encodes a Pi starvation-responsive protein AtPS3.; phosphate starvation-induced gene 3 (PS3); FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, transmembrane transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G30560.1); Has 26325 Blast hits to 26083 proteins in 2250 species: Archae - 498; Bacteria - 20836; Metazoa - 940; Fungi - 2597; Plants - 303; Viruses - 0; Other Eukaryotes - 1151 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description) 0.8957566369726963 48 evm.model.contig_3478.6 no hits & (original description: no original description) 0.8953375201931417 49 evm.model.contig_2113.8 (at1g14610 : 915.0) Required for proper proliferation of basal cells.; TWIN 2 (TWN2); FUNCTIONS IN: valine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (TAIR:AT5G16715.1); Has 39194 Blast hits to 36732 proteins in 3122 species: Archae - 839; Bacteria - 19755; Metazoa - 1534; Fungi - 892; Plants - 369; Viruses - 3; Other Eukaryotes - 15802 (source: NCBI BLink). & (reliability: 1830.0) & (original description: no original description) 0.891674226435792 68 evm.model.contig_545.13 (at1g17850 : 107.0) Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1). & (reliability: 214.0) & (original description: no original description) 0.8910502047423569 56 evm.model.contig_496.20 (at1g01960 : 464.0) embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0; Bacteria - 34; Metazoa - 1480; Fungi - 646; Plants - 300; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink). & (reliability: 928.0) & (original description: no original description) 0.886628287061678 62 evm.model.contig_3509.5 (at5g52790 : 181.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 362.0) & (original description: no original description) 0.8836141121552215 66 evm.model.contig_2020.11 (at3g15140 : 102.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 576 Blast hits to 576 proteins in 123 species: Archae - 0; Bacteria - 44; Metazoa - 336; Fungi - 16; Plants - 80; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.8834536074717598 67 evm.model.contig_2146.22 (at1g19230 : 124.0) Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Cytochrome b245, heavy chain (InterPro:IPR000778), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1). & (reliability: 248.0) & (original description: no original description) 0.881181218779966 78 evm.model.contig_460.3 (at1g17690 : 218.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description) 0.8807815764488249 72 evm.model.contig_3387.5 no hits & (original description: no original description) 0.8796165034111684 74 evm.model.contig_2064.2 no hits & (original description: no original description) 0.8789123676211019 77 evm.model.contig_3515.3 no hits & (original description: no original description) 0.8788713571429003 86 evm.model.contig_603.1 (o82039|spy_pethy : 595.0) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-) (PhSPY) - Petunia hybrida (Petunia) & (at3g11540 : 580.0) Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.; SPINDLY (SPY); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1160.0) & (original description: no original description) 0.8779916928756636 95 evm.model.contig_2350.5 (at5g65560 : 173.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G77340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 167.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 316.0) & (original description: no original description) 0.8772745712462718 83 evm.model.contig_4452.1 (at2g41790 : 661.0) Insulinase (Peptidase family M16) family protein; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: Insulinase (Peptidase family M16) family protein (TAIR:AT3G57470.2); Has 9660 Blast hits to 9541 proteins in 2186 species: Archae - 9; Bacteria - 6247; Metazoa - 831; Fungi - 633; Plants - 271; Viruses - 3; Other Eukaryotes - 1666 (source: NCBI BLink). & (reliability: 1322.0) & (original description: no original description) 0.8756553290382689 96 evm.model.contig_458.9 (original description: no original description) 0.8752493754769015 89 evm.model.contig_3491.5 (at5g05450 : 337.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G71370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p46942|db10_nicsy : 164.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 640.0) & (original description: no original description) 0.8741550096628881 94