Sequence Description Alias PCC hrr evm.model.contig_503.13 (at5g61460 : 315.0) Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; hypersensitive to MMS, irradiation and MMC (MIM); FUNCTIONS IN: ATP binding; INVOLVED IN: double-strand break repair, sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 6A (TAIR:AT5G07660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description) 0.9354208271567226 20 evm.model.contig_542.13 (at1g09280 : 85.9) CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). & (reliability: 171.8) & (original description: no original description) 0.9349503179759223 8 evm.model.contig_2262.6 no hits & (original description: no original description) 0.9328197602073243 23 evm.model.contig_3494.6 (at5g06420 : 114.0) Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT1G01350.1); Has 883 Blast hits to 880 proteins in 224 species: Archae - 0; Bacteria - 1; Metazoa - 340; Fungi - 209; Plants - 163; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description) 0.9318966304313325 52 evm.model.contig_2079.7 no hits & (original description: no original description) 0.9304725357049908 16 evm.model.contig_866.1 no hits & (original description: no original description) 0.9277717994959988 7 evm.model.contig_474.1 (at3g56690 : 117.0) encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined.; Cam interacting protein 111 (CIP111); FUNCTIONS IN: ATPase activity, calmodulin binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 63578 Blast hits to 32942 proteins in 3240 species: Archae - 2541; Bacteria - 24762; Metazoa - 9322; Fungi - 6853; Plants - 5967; Viruses - 72; Other Eukaryotes - 14061 (source: NCBI BLink). & (p54774|cdc48_soybn : 110.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 234.0) & (original description: no original description) 0.9237612129815606 90 evm.model.contig_4431.10 no hits & (original description: no original description) 0.92155047451595 75 evm.model.contig_3404.4 (at3g45090 : 176.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description) 0.92121504666786 68 evm.model.contig_2120.1 no hits & (original description: no original description) 0.919254743796945 23 evm.model.contig_4398.5 (at1g72960 : 124.0) Root hair defective 3 GTP-binding protein (RHD3); CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT3G13870.1); Has 479 Blast hits to 469 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 185; Plants - 127; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink). & (reliability: 248.0) & (original description: no original description) 0.9184473563033815 38 evm.model.contig_2177.8 (at1g21760 : 88.6) This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.; F-box protein 7 (FBP7); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 471 Blast hits to 471 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 249; Fungi - 132; Plants - 70; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). & (reliability: 177.2) & (original description: no original description) 0.9161002834837004 14 evm.model.contig_2494.34 no hits & (original description: no original description) 0.914056115061939 62 evm.model.contig_2350.7 (at5g25150 : 112.0) Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID).; TBP-associated factor 5 (TAF5); FUNCTIONS IN: transcription regulator activity, nucleotide binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: guard cell, root, inflorescence, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), TFIID subunit, WD40-associated region (InterPro:IPR007582); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 114463 Blast hits to 42274 proteins in 991 species: Archae - 68; Bacteria - 11258; Metazoa - 46869; Fungi - 25620; Plants - 15010; Viruses - 3; Other Eukaryotes - 15635 (source: NCBI BLink). & (p93340|gblp_nicpl : 94.0) Guanine nucleotide-binding protein subunit beta-like protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 202.0) & (original description: no original description) 0.9121646712793866 46 evm.model.contig_2246.4 no hits & (original description: no original description) 0.9095470057766263 19 evm.model.contig_2194.7 no hits & (original description: no original description) 0.9092208102647235 19 evm.model.contig_2707.2 no hits & (original description: no original description) 0.9088021308370787 73 evm.model.contig_833.1 no hits & (original description: no original description) 0.9074952526735306 90 evm.model.contig_4478.2 (at2g32240 : 147.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). & (q9m7j4|mfp1_tobac : 85.1) MAR-binding filament-like protein 1-1 - Nicotiana tabacum (Common tobacco) & (reliability: 294.0) & (original description: no original description) 0.906324580472473 55 evm.model.contig_3413.5 no hits & (original description: no original description) 0.9050772422723977 24 evm.model.contig_518.3 no hits & (original description: no original description) 0.9037110678815946 60 evm.model.contig_4465.6 no hits & (original description: no original description) 0.9029422605312944 27 evm.model.contig_3706.3 (at4g33140 : 136.0) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5'(3')-deoxyribonucleotidase (InterPro:IPR010708); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description) 0.9023557254580868 29 evm.model.contig_527.2 no hits & (original description: no original description) 0.9012258749110723 88 evm.model.contig_4448.3 no hits & (original description: no original description) 0.9000481177537886 38 evm.model.contig_4408.13 (at2g26470 : 105.0) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738); Has 3646 Blast hits to 3636 proteins in 1001 species: Archae - 41; Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants - 44; Viruses - 14; Other Eukaryotes - 1358 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description) 0.8999235163639677 71 evm.model.contig_4443.10 no hits & (original description: no original description) 0.8978271232359157 37 evm.model.contig_2282.10 (at2g41530 : 273.0) Encodes a protein with S-formylglutathione hydrolase activity.; S-formylglutathione hydrolase (SFGH); FUNCTIONS IN: hydrolase activity, acting on ester bonds, S-formylglutathione hydrolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative esterase (InterPro:IPR000801), S-formylglutathione hydrolase (InterPro:IPR014186); Has 3295 Blast hits to 3294 proteins in 1269 species: Archae - 2; Bacteria - 2478; Metazoa - 258; Fungi - 146; Plants - 60; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink). & (reliability: 546.0) & (original description: no original description) 0.8976229715023639 76 evm.model.contig_2359.6 no hits & (original description: no original description) 0.8955365741250518 41 evm.model.contig_4456.16 no hits & (original description: no original description) 0.8932908245361142 43 evm.model.contig_448.25 (p25868|ubc7_wheat : 224.0) Ubiquitin-conjugating enzyme E2 7 (EC 6.3.2.19) (Ubiquitin-protein ligase 7) (Ubiquitin carrier protein 7) - Triticum aestivum (Wheat) & (at5g59300 : 223.0) ubiquitin conjugating enzyme E2; ubiquitin carrier protein 7 (UBC7); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 13 (TAIR:AT3G46460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 446.0) & (original description: no original description) 0.8931016265270364 65 evm.model.contig_444.23 no hits & (original description: no original description) 0.8925905857793427 80 evm.model.contig_542.8 (at5g08415 : 384.0) Radical SAM superfamily protein; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, lipoic acid synthase activity, iron-sulfur cluster binding, lipoate synthase activity, catalytic activity; INVOLVED IN: lipoic acid biosynthetic process, lipoate biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Lipoate synthase (InterPro:IPR003698), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 768.0) & (original description: no original description) 0.8915901645898767 49 evm.model.contig_3426.10 (original description: no original description) 0.8912889203952422 87 evm.model.contig_2083.7 no hits & (original description: no original description) 0.8910765071258939 91 evm.model.contig_3531.2 (at4g36800 : 201.0) RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.; RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink). & (p35130|ubc2_medsa : 85.5) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) - Medicago sativa (Alfalfa) & (reliability: 370.0) & (original description: no original description) 0.8903719498331895 55 evm.model.contig_510.11 no hits & (original description: no original description) 0.8895241847782965 63 evm.model.contig_2016.8 (at1g16440 : 228.0) root hair specific 3 (RSH3); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC kinase 1.7 (TAIR:AT1G79250.2); Has 101577 Blast hits to 89577 proteins in 2716 species: Archae - 38; Bacteria - 12727; Metazoa - 39279; Fungi - 11275; Plants - 19035; Viruses - 382; Other Eukaryotes - 18841 (source: NCBI BLink). & (p15792|kpk1_phavu : 201.0) Protein kinase PVPK-1 (EC 2.7.11.1) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 456.0) & (original description: no original description) 0.8828618574721809 76 evm.model.contig_503.2 (at3g13235 : 204.0) ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase aspartic (InterPro:IPR021109), Ubiquitin subgroup (InterPro:IPR019956), Peptidase aspartic, eukaryotic predicted (InterPro:IPR019103), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060). & (reliability: 408.0) & (original description: no original description) 0.8800088326882182 95 evm.model.contig_693.6 no hits & (original description: no original description) 0.8779198502612138 77 evm.model.contig_2068.22 no hits & (original description: no original description) 0.8763132660394929 95 evm.model.contig_482.14 no hits & (original description: no original description) 0.8757289604763568 82 evm.model.contig_4539.1 no hits & (original description: no original description) 0.8754493992442022 84 evm.model.contig_2009.2 no hits & (original description: no original description) 0.8736051438995037 90