Sequence Description Alias PCC hrr evm.model.contig_2130.11 (at3g12080 : 186.0) embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding, EngA (InterPro:IPR016484), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46500 Blast hits to 25681 proteins in 2968 species: Archae - 249; Bacteria - 36237; Metazoa - 387; Fungi - 432; Plants - 421; Viruses - 0; Other Eukaryotes - 8774 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description) 0.9615646790364855 10 evm.model.contig_2130.10 (at3g12080 : 169.0) embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding, EngA (InterPro:IPR016484), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46500 Blast hits to 25681 proteins in 2968 species: Archae - 249; Bacteria - 36237; Metazoa - 387; Fungi - 432; Plants - 421; Viruses - 0; Other Eukaryotes - 8774 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description) 0.960726036133879 8 evm.model.contig_3445.4 (at3g02060 : 432.0) DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31156 Blast hits to 30938 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1548; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink). & (reliability: 864.0) & (original description: no original description) 0.9514447505157513 7 evm.model.contig_684.1 no hits & (original description: no original description) 0.9498913441543283 22 evm.model.contig_4410.20 (at1g59990 : 118.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 57869 Blast hits to 34290 proteins in 2955 species: Archae - 517; Bacteria - 30307; Metazoa - 8550; Fungi - 6961; Plants - 3872; Viruses - 6; Other Eukaryotes - 7656 (source: NCBI BLink). & (gnl|cdd|68872 : 105.0) no description available & (reliability: 236.0) & (original description: no original description) 0.948426616389736 5 evm.model.contig_2357.6 (at3g28460 : 120.0) methyltransferases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00095 (InterPro:IPR004398); Has 4869 Blast hits to 4869 proteins in 1755 species: Archae - 2; Bacteria - 3296; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.9467853159267984 54 evm.model.contig_3454.1 (at2g04030 : 568.0) Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.; CR88; FUNCTIONS IN: ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HEAT SHOCK PROTEIN 89.1 (TAIR:AT3G07770.1); Has 8908 Blast hits to 8859 proteins in 2447 species: Archae - 4; Bacteria - 3393; Metazoa - 2086; Fungi - 314; Plants - 461; Viruses - 0; Other Eukaryotes - 2650 (source: NCBI BLink). & (q08277|hsp82_maize : 538.0) Heat shock protein 82 - Zea mays (Maize) & (reliability: 1136.0) & (original description: no original description) 0.9464290604630182 7 evm.model.contig_454.15 (at2g37990 : 92.4) ribosome biogenesis regulatory protein (RRS1) family protein; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis regulatory protein (InterPro:IPR007023); Has 425 Blast hits to 423 proteins in 207 species: Archae - 1; Bacteria - 2; Metazoa - 151; Fungi - 137; Plants - 58; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description) 0.9448363238059485 60 evm.model.contig_3476.9 no hits & (original description: no original description) 0.9432107932876044 18 evm.model.contig_531.15 no hits & (original description: no original description) 0.9380562850298476 33 evm.model.contig_4439.4 (at3g26410 : 186.0) methyltransferases;nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), tRNA guanosine-2'-O-methyltransferase, TRM11 (InterPro:IPR016691), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 597 Blast hits to 588 proteins in 280 species: Archae - 150; Bacteria - 5; Metazoa - 158; Fungi - 132; Plants - 50; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description) 0.9376424913164765 81 evm.model.contig_3404.10 (at5g10330 : 337.0) Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.; histidinol phosphate aminotransferase 1 (HPA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 35141 Blast hits to 35141 proteins in 2910 species: Archae - 1034; Bacteria - 25652; Metazoa - 263; Fungi - 377; Plants - 462; Viruses - 0; Other Eukaryotes - 7353 (source: NCBI BLink). & (q9few2|his8_nicpl : 333.0) Histidinol-phosphate aminotransferase, chloroplast precursor (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 674.0) & (original description: no original description) 0.9374107093932378 48 evm.model.contig_2143.1 (at3g11964 : 182.0) RNA binding;RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: nucleolus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), RNA-processing protein, HAT helix (InterPro:IPR003107), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G51110.1); Has 43836 Blast hits to 19683 proteins in 2824 species: Archae - 141; Bacteria - 33398; Metazoa - 1103; Fungi - 905; Plants - 756; Viruses - 0; Other Eukaryotes - 7533 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description) 0.9372838765473104 55 evm.model.contig_2016.4 (at4g38370 : 89.4) Phosphoglycerate mutase family protein; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 178.8) & (original description: no original description) 0.9368316671961653 36 evm.model.contig_3524.8 (at2g47990 : 220.0) Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.; SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink). & (p93340|gblp_nicpl : 81.3) Guanine nucleotide-binding protein subunit beta-like protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 440.0) & (original description: no original description) 0.9363650007324664 97 evm.model.contig_750.2 (at4g10620 : 197.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G57180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6ypg5|nos_orysa : 155.0) Putative nitric-oxide synthase (EC 1.14.13.39) - Oryza sativa (Rice) & (reliability: 394.0) & (original description: no original description) 0.9355288731584279 61 evm.model.contig_4618.1 no hits & (original description: no original description) 0.9346063255511834 19 evm.model.contig_2130.12 (at3g62910 : 423.0) Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.; ALBINO AND PALE GREEN (APG3); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, chloroplast organization; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT2G47020.1); Has 17224 Blast hits to 17222 proteins in 2820 species: Archae - 0; Bacteria - 10525; Metazoa - 262; Fungi - 197; Plants - 224; Viruses - 13; Other Eukaryotes - 6003 (source: NCBI BLink). & (reliability: 846.0) & (original description: no original description) 0.9345957199554774 20 evm.model.contig_2286.24 no hits & (original description: no original description) 0.9342402630366622 81 evm.model.contig_3426.14 (at1g16350 : 224.0) Aldolase-type TIM barrel family protein; FUNCTIONS IN: IMP dehydrogenase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: oxidation reduction, GMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79470.1); Has 13531 Blast hits to 12775 proteins in 2707 species: Archae - 178; Bacteria - 7353; Metazoa - 466; Fungi - 180; Plants - 86; Viruses - 2; Other Eukaryotes - 5266 (source: NCBI BLink). & (reliability: 448.0) & (original description: no original description) 0.9316843689909033 30 evm.model.contig_2349.5 (at2g03430 : 100.0) Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description) 0.9313975558543814 25 evm.model.contig_2082.2 no hits & (original description: no original description) 0.931212550964294 57 evm.model.contig_503.8 (at3g01120 : 407.0) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome.; METHIONINE OVERACCUMULATION 1 (MTO1); FUNCTIONS IN: cystathionine gamma-synthase activity; INVOLVED IN: methionine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G33320.1); Has 21364 Blast hits to 20702 proteins in 2452 species: Archae - 220; Bacteria - 11705; Metazoa - 241; Fungi - 842; Plants - 284; Viruses - 13; Other Eukaryotes - 8059 (source: NCBI BLink). & (reliability: 814.0) & (original description: no original description) 0.9308250175434458 51 evm.model.contig_4465.5 (at1g60230 : 328.0) Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6934 Blast hits to 6928 proteins in 2336 species: Archae - 3; Bacteria - 5075; Metazoa - 1; Fungi - 1; Plants - 140; Viruses - 5; Other Eukaryotes - 1709 (source: NCBI BLink). & (reliability: 656.0) & (original description: no original description) 0.930088767666608 65 evm.model.contig_4582.2 no hits & (original description: no original description) 0.9289771121623591 30 evm.model.contig_2075.1 (at5g52820 : 508.0) WD-40 repeat family protein / notchless protein, putative; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), NLE (InterPro:IPR012972), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93340|gblp_nicpl : 111.0) Guanine nucleotide-binding protein subunit beta-like protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 1016.0) & (original description: no original description) 0.9264118764630969 88 evm.model.contig_3557.2 (at1g31660 : 275.0) CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). & (reliability: 550.0) & (original description: no original description) 0.9256910667609914 36 evm.model.contig_4403.9 (at2g45300 : 472.0) encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesis; RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta; FUNCTIONS IN: 3-phosphoshikimate 1-carboxyvinyltransferase activity; INVOLVED IN: glyphosate metabolic process, chorismate biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: 3-phosphoshikimate 1-carboxyvinyltransferase, core (InterPro:IPR001986), 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup (InterPro:IPR006264), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); BEST Arabidopsis thaliana protein match is: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (TAIR:AT1G48860.1); Has 13824 Blast hits to 13779 proteins in 2767 species: Archae - 215; Bacteria - 9594; Metazoa - 6; Fungi - 149; Plants - 206; Viruses - 0; Other Eukaryotes - 3654 (source: NCBI BLink). & (p17688|aroa_brana : 471.0) 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) - Brassica napus (Rape) & (reliability: 944.0) & (original description: no original description) 0.9256706292234497 47 evm.model.contig_529.3 (at5g18570 : 291.0) Encodes AtObgC, a plant ortholog of bacterial Obg. AtObgC is a chloroplast-targeting GTPase essential for early embryogenesis. Mutations in this locus result in embryo lethality. The protein is dually localized in the stroma and the inner envelope membrane and is involved in thylakoid membrane biogenesis.; EMBRYO DEFECTIVE 269 (EMB269); FUNCTIONS IN: GTPase activity; INVOLVED IN: response to light stimulus, thylakoid membrane organization, embryo development, embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast stroma, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP-binding protein GTP1/OBG, C-terminal (InterPro:IPR015349), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07615.1); Has 23458 Blast hits to 23162 proteins in 3000 species: Archae - 644; Bacteria - 14053; Metazoa - 1121; Fungi - 826; Plants - 464; Viruses - 52; Other Eukaryotes - 6298 (source: NCBI BLink). & (reliability: 582.0) & (original description: no original description) 0.9247329286764787 38 evm.model.contig_782.2 (at1g50920 : 569.0) Nucleolar GTP-binding protein; FUNCTIONS IN: GTP binding, nucleotide binding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), NOG, C-terminal (InterPro:IPR012973); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 9379 Blast hits to 9179 proteins in 2035 species: Archae - 370; Bacteria - 5195; Metazoa - 1143; Fungi - 469; Plants - 325; Viruses - 0; Other Eukaryotes - 1877 (source: NCBI BLink). & (reliability: 1138.0) & (original description: no original description) 0.9224651975449449 95 evm.model.contig_2706.10 (at2g26360 : 88.6) Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G35800.1); Has 17043 Blast hits to 12636 proteins in 416 species: Archae - 0; Bacteria - 6; Metazoa - 6988; Fungi - 5263; Plants - 3119; Viruses - 0; Other Eukaryotes - 1667 (source: NCBI BLink). & (reliability: 177.2) & (original description: no original description) 0.921774209328652 47 evm.model.contig_620.2 (at4g36390 : 156.0) Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, transferase activity, catalytic activity; INVOLVED IN: RNA modification, tRNA modification; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463), Methylthiotransferase, conserved site (InterPro:IPR020612), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT1G72090.1); Has 15610 Blast hits to 15591 proteins in 2425 species: Archae - 356; Bacteria - 9631; Metazoa - 288; Fungi - 1; Plants - 108; Viruses - 0; Other Eukaryotes - 5226 (source: NCBI BLink). & (q2r1u4|ck5p1_orysa : 153.0) CDK5RAP1-like protein - Oryza sativa (Rice) & (reliability: 312.0) & (original description: no original description) 0.9156531968771856 94 evm.model.contig_656.1 no hits & (original description: no original description) 0.9138930970688101 61 evm.model.contig_2031.21 (gnl|cdd|68872 : 102.0) no description available & (at4g26650 : 97.1) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55550.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q08937|roc2_nicsy : 85.5) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B) - Nicotiana sylvestris (Wood tobacco) & (reliability: 194.2) & (original description: no original description) 0.913390664069129 62 evm.model.contig_3392.13 (at1g76050 : 85.5) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: shoot, leaf lamina base, stem, embryo, leaf whorl; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, RluC/RluD (InterPro:IPR006225), Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G19440.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description) 0.9121069210547449 68 evm.model.contig_2174.3 (at3g58180 : 202.0) ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: phycobilisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G62530.1); Has 1934 Blast hits to 1064 proteins in 388 species: Archae - 226; Bacteria - 670; Metazoa - 295; Fungi - 345; Plants - 90; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink). & (q2qlw3|dohhb_orysa : 199.0) Deoxyhypusine hydroxylase-B (EC 1.14.99.29) (Deoxyhypusine monooxygenase-B) - Oryza sativa (Rice) & (reliability: 404.0) & (original description: no original description) 0.910925760399318 70 evm.model.contig_433.9 no hits & (original description: no original description) 0.910381077636059 86 evm.model.contig_477.3 (at2g31170 : 303.0) SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, DALR (InterPro:IPR015273), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 10676 Blast hits to 10676 proteins in 2860 species: Archae - 252; Bacteria - 6117; Metazoa - 332; Fungi - 154; Plants - 139; Viruses - 3; Other Eukaryotes - 3679 (source: NCBI BLink). & (reliability: 606.0) & (original description: no original description) 0.9100063588729871 73 evm.model.contig_4469.2 no hits & (original description: no original description) 0.9065217622670223 80 evm.model.contig_2355.1 no hits & (original description: no original description) 0.9059016170763667 81 evm.model.contig_2262.2 (at5g22100 : 276.0) RNA cyclase family protein; FUNCTIONS IN: RNA-3'-phosphate cyclase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA 3'-terminal phosphate cyclase-like, conserved site (InterPro:IPR020719), RNA 3'-terminal phosphate cyclase-like (InterPro:IPR000228), RNA 3'-terminal phosphate cyclase, insert domain (InterPro:IPR013796), RNA 3'-terminal phosphate cyclase-like, eukaryotic (InterPro:IPR016443), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 552.0) & (original description: no original description) 0.9036941646359209 85 evm.model.contig_2248.2 (at2g38230 : 441.0) Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.; pyridoxine biosynthesis 1.1 (PDX1.1); FUNCTIONS IN: protein heterodimerization activity; INVOLVED IN: vitamin B6 biosynthetic process, response to absence of light; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 14 plant structures; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G01410.1); Has 4179 Blast hits to 4172 proteins in 1294 species: Archae - 234; Bacteria - 2657; Metazoa - 13; Fungi - 160; Plants - 179; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink). & (q39963|pdx1_hevbr : 437.0) Probable pyridoxin biosynthesis protein ER1 (PDX1 homolog) (Ethylene-inducible protein HEVER) - Hevea brasiliensis (Para rubber tree) & (reliability: 882.0) & (original description: no original description) 0.9025260625825616 89 evm.model.contig_2562.1 (at2g46230 : 217.0) PIN domain-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT1G26530.1); Has 609 Blast hits to 609 proteins in 228 species: Archae - 22; Bacteria - 0; Metazoa - 231; Fungi - 162; Plants - 97; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). & (reliability: 434.0) & (original description: no original description) 0.9017537177696168 95 evm.model.contig_470.1 no hits & (original description: no original description) 0.9009716350010346 98 evm.model.contig_2020.38 (q01292|ilv5_spiol : 639.0) Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) - Spinacia oleracea (Spinach) & (at3g58610 : 630.0) ketol-acid reductoisomerase; CONTAINS InterPro DOMAIN/s: Acetohydroxy acid isomeroreductase, catalytic (InterPro:IPR013116), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Acetohydroxy acid isomeroreductase C-terminal (InterPro:IPR000506), Ketol-acid reductoisomerase (InterPro:IPR016206), Acetohydroxy acid isomeroreductase (InterPro:IPR013023), NAD(P)-binding domain (InterPro:IPR016040). & (reliability: 1260.0) & (original description: no original description) 0.9006087241173306 100