Sequence Description Alias PCC hrr evm.model.contig_2064.1 (original description: no original description) 0.8748896071512042 1 evm.model.contig_2293.6 (at3g10840 : 100.0) alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G15490.1); Has 7044 Blast hits to 6961 proteins in 1208 species: Archae - 69; Bacteria - 5119; Metazoa - 311; Fungi - 102; Plants - 308; Viruses - 4; Other Eukaryotes - 1131 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description) 0.8633450896449203 3 evm.model.contig_4406.9 (at5g46840 : 108.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2); Has 3214 Blast hits to 3009 proteins in 274 species: Archae - 0; Bacteria - 38; Metazoa - 1562; Fungi - 589; Plants - 622; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) 0.8583125343390937 9 evm.model.contig_128.1 (q9lre5|dpod2_orysa : 169.0) DNA polymerase delta small subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at2g42120 : 159.0) DNA polymerase delta small subunit (POLD2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description) 0.848023278681528 4 evm.model.contig_440.8 (at5g64960 : 328.0) Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.; cyclin dependent kinase group C2 (CDKC2); FUNCTIONS IN: kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, nuclear body, nucleus, microtubule, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase C;1 (TAIR:AT5G10270.1); Has 123595 Blast hits to 117864 proteins in 4086 species: Archae - 72; Bacteria - 13038; Metazoa - 48540; Fungi - 13012; Plants - 28885; Viruses - 501; Other Eukaryotes - 19547 (source: NCBI BLink). & (q38773|cdc2b_antma : 234.0) Cell division control protein 2 homolog B (EC 2.7.11.22) (EC 2.7.11.23) (Fragment) - Antirrhinum majus (Garden snapdragon) & (reliability: 656.0) & (original description: no original description) 0.8473321570512065 7 evm.model.contig_430.5 no hits & (original description: no original description) 0.8421579171033329 6 evm.model.contig_567.6 no hits & (original description: no original description) 0.8389364237327349 20 evm.model.contig_3682.1 (at1g30270 : 171.0) Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylating AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9.; CBL-interacting protein kinase 23 (CIPK23); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 9 (TAIR:AT1G01140.1); Has 132391 Blast hits to 130112 proteins in 4449 species: Archae - 167; Bacteria - 15551; Metazoa - 48688; Fungi - 13416; Plants - 32041; Viruses - 531; Other Eukaryotes - 21997 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 154.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 342.0) & (original description: no original description) 0.8232600415971888 10 evm.model.contig_2100.4 (at3g27180 : 177.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00095 (InterPro:IPR004398); Has 4717 Blast hits to 4707 proteins in 1568 species: Archae - 39; Bacteria - 4296; Metazoa - 92; Fungi - 26; Plants - 68; Viruses - 1; Other Eukaryotes - 195 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description) 0.8182681455180422 14 evm.model.contig_611.8 no hits & (original description: no original description) 0.8129187493425467 11 evm.model.contig_2033.2 (at1g80480 : 142.0) plastid transcriptionally active 17 (PTAC17); LOCATED IN: plastid chromosome, chloroplast stroma, chloroplast, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: Cobalamin biosynthesis CobW-like protein (TAIR:AT1G15730.1); Has 22612 Blast hits to 14499 proteins in 1972 species: Archae - 190; Bacteria - 10146; Metazoa - 2946; Fungi - 801; Plants - 655; Viruses - 16; Other Eukaryotes - 7858 (source: NCBI BLink). & (gnl|cdd|68872 : 117.0) no description available & (reliability: 284.0) & (original description: no original description) 0.7999097989024893 51 evm.model.contig_3476.3 no hits & (original description: no original description) 0.7955148705105433 13 evm.model.contig_2015.19 (at1g08540 : 99.4) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description) 0.7922284599190524 16 evm.model.contig_3403.6 no hits & (original description: no original description) 0.7905618976854565 15 evm.model.contig_2055.2 (q94hf1|if3c_orysa : 108.0) Eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) - Oryza sativa (Rice) & (at4g33250 : 103.0) Encodes initiation factor 3k (EIF3k).; eukaryotic translation initiation factor 3K (EIF3K); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Translation initiation factor 3, subunit 12, N-terminal, eukaryotic (InterPro:IPR016020), Translation initiation factor 3, subunit 12, eukaryotic (InterPro:IPR009374), Armadillo-type fold (InterPro:IPR016024), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); Has 423 Blast hits to 423 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 100; Plants - 89; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description) 0.7878467419205462 16 evm.model.contig_4456.9 (q6z2l5|kprs1_orysa : 350.0) Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1) - Oryza sativa (Rice) & (at2g35390 : 339.0) Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 678.0) & (original description: no original description) 0.7855799883644857 53 evm.model.contig_2065.3 (at3g10180 : 325.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G59540.1); Has 155291 Blast hits to 84008 proteins in 3275 species: Archae - 1854; Bacteria - 27736; Metazoa - 67441; Fungi - 13681; Plants - 10077; Viruses - 530; Other Eukaryotes - 33972 (source: NCBI BLink). & (p46869|fla10_chlre : 263.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 650.0) & (original description: no original description) 0.7790391476607528 96 evm.model.contig_2132.8 (at5g04130 : 677.0) DNA GYRASE B2; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241); BEST Arabidopsis thaliana protein match is: DNA GYRASE B1 (TAIR:AT3G10270.1); Has 25944 Blast hits to 25881 proteins in 6578 species: Archae - 105; Bacteria - 19082; Metazoa - 171; Fungi - 228; Plants - 112; Viruses - 77; Other Eukaryotes - 6169 (source: NCBI BLink). & (q5nbj3|gyrb_orysa : 667.0) DNA gyrase subunit B, chloroplast/mitochondrial precursor (EC 5.99.1.3) - Oryza sativa (Rice) & (reliability: 1354.0) & (original description: no original description) 0.7715897525560433 94 evm.model.contig_522.18 no hits & (original description: no original description) 0.7682808439960699 22 evm.model.contig_782.1 (at3g47450 : 109.0) Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. In Arabidopsis, mutant analyses show that this protein regulates growth and hormonal signaling in plants. It also attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence and cell death. This gene product is also involved in nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins, including RBCL, ClpP1, and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase, but, the synthase activity was later disproven. In addition, new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts.; NO ASSOCIATED 1 (NOA1); FUNCTIONS IN: GTPase activity; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G57180.1); Has 1589 Blast hits to 1531 proteins in 754 species: Archae - 6; Bacteria - 1199; Metazoa - 159; Fungi - 35; Plants - 109; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). & (q6ypg5|nos_orysa : 102.0) Putative nitric-oxide synthase (EC 1.14.13.39) - Oryza sativa (Rice) & (reliability: 218.0) & (original description: no original description) 0.7635937189987577 31 evm.model.contig_2070.3 (at2g03820 : 363.0) nonsense-mediated mRNA decay NMD3 family protein; CONTAINS InterPro DOMAIN/s: NMD3 (InterPro:IPR007064); Has 480 Blast hits to 466 proteins in 217 species: Archae - 17; Bacteria - 0; Metazoa - 145; Fungi - 138; Plants - 63; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). & (reliability: 726.0) & (original description: no original description) 0.7614003938950796 55 evm.model.contig_2088.7 no hits & (original description: no original description) 0.7366391697760541 35 evm.model.contig_3395.2 no hits & (original description: no original description) 0.7359118765188214 74 evm.model.contig_2104.10 no hits & (original description: no original description) 0.7232171624124852 99 evm.model.contig_3490.2 (at2g35390 : 309.0) Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q9xg98|kprs1_spiol : 304.0) Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1) - Spinacia oleracea (Spinach) & (reliability: 618.0) & (original description: no original description) 0.7185672640800276 51 evm.model.contig_535.5 (original description: no original description) 0.7174132925342279 62 evm.model.contig_4454.4 (at5g48840 : 145.0) Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate.; homolog of bacterial PANC (PANC); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pantoate-beta-alanine ligase (InterPro:IPR003721); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o24035|panc_lotja : 144.0) Pantoate--beta-alanine ligase precursor (EC 6.3.2.1) (Pantothenate synthetase) (Pantoate-activating enzyme) - Lotus japonicus & (reliability: 290.0) & (original description: no original description) 0.6865300200782531 75 evm.model.contig_4456.15 (at2g33700 : 125.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51470.1); Has 6726 Blast hits to 6663 proteins in 500 species: Archae - 12; Bacteria - 399; Metazoa - 1621; Fungi - 698; Plants - 2664; Viruses - 7; Other Eukaryotes - 1325 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description) 0.6713955516761175 95 evm.model.contig_534.2 (at3g01610 : 432.0) AAA-type ATPase - Over 90% homologous to CDC48a; cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink). & (q96372|cdc48_capan : 262.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 864.0) & (original description: no original description) 0.6611722480201805 94