Sequence Description Alias PCC hrr evm.model.contig_3423.6 (at5g20250 : 217.0) encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.; DARK INDUCIBLE 10 (DIN10); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1). & (q93xk2|stsyn_pea : 122.0) Stachyose synthase precursor (EC 2.4.1.67) (Galactinol--raffinose galactosyltransferase) - Pisum sativum (Garden pea) & (reliability: 434.0) & (original description: no original description) 0.9013084549660858 55 evm.model.contig_531.8 (p48489|pp1_orysa : 146.0) Serine/threonine-protein phosphatase PP1 (EC 3.1.3.16) - Oryza sativa (Rice) & (at2g42500 : 139.0) Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].; protein phosphatase 2A-3 (PP2A-3); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-4 (TAIR:AT3G58500.1). & (reliability: 278.0) & (original description: no original description) 0.9008087772841201 41 evm.model.contig_481.1 (at4g19610 : 314.0) nucleotide binding;nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G08695.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 628.0) & (original description: no original description) 0.8789687931894047 36 evm.model.contig_2286.19 (at4g02260 : 389.0) RELA/SPOT homolog 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 778.0) & (original description: no original description) 0.8754616239231219 29 evm.model.contig_4503.5 (at4g36210 : 114.0) Protein of unknown function (DUF726); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF726 (InterPro:IPR007941); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF726) (TAIR:AT2G18100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description) 0.8678588787588092 100 evm.model.contig_3412.6 (q9fns4|mbb1_chlre : 203.0) PsbB mRNA maturation factor Mbb1, chloroplast precursor - Chlamydomonas reinhardtii & (at3g17040 : 184.0) It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.; high chlorophyll fluorescent 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, RNA processing, regulation of translation; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1). & (reliability: 368.0) & (original description: no original description) 0.8628423244798266 8 evm.model.contig_2196.2 no hits & (original description: no original description) 0.8621233952069023 96 evm.model.contig_517.4 (original description: no original description) 0.8614323638309113 12 evm.model.contig_3451.13 (at3g04710 : 92.4) ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT3G04700.1). & (q8vyx2|akt1_orysa : 88.6) Potassium channel AKT1 (OsAKT1) - Oryza sativa (Rice) & (reliability: 174.8) & (original description: no original description) 0.854681141853262 13 evm.model.contig_3446.2 no hits & (original description: no original description) 0.8506034837625325 39 evm.model.contig_2172.4 no hits & (original description: no original description) 0.8502957092811941 53 evm.model.contig_512.1 (at4g29680 : 171.0) Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1); Has 2446 Blast hits to 2426 proteins in 629 species: Archae - 13; Bacteria - 1090; Metazoa - 671; Fungi - 207; Plants - 107; Viruses - 6; Other Eukaryotes - 352 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description) 0.8458782748436808 62 evm.model.contig_2092.3 no hits & (original description: no original description) 0.8304099941026465 56 evm.model.contig_537.4 (at5g16630 : 123.0) RAD4; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transglutaminase-like (InterPro:IPR002931), DNA repair protein Rad4, DNA-binding domain 1 (InterPro:IPR018326), DNA repair protein Rad4, DNA-binding domain 3 (InterPro:IPR018328), DNA repair protein Rad4, DNA-binding domain 2 (InterPro:IPR018327), DNA repair protein Rad4, transglutaminase-like domain (InterPro:IPR018325), DNA repair protein Rad4 (InterPro:IPR004583); Has 662 Blast hits to 576 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 265; Plants - 79; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). & (reliability: 246.0) & (original description: no original description) 0.8245777525941316 54 evm.model.contig_467.2 no hits & (original description: no original description) 0.8196598301781473 55 evm.model.contig_4403.11 (at3g55070 : 206.0) LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein (TAIR:AT4G37880.1); Has 813 Blast hits to 810 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 254; Plants - 147; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 412.0) & (original description: no original description) 0.8161194578161257 59 evm.model.contig_3486.2 no hits & (original description: no original description) 0.8015345267464529 79