Sequence Description Alias PCC hrr evm.model.contig_4404.27 (at4g13590 : 169.0) Uncharacterized protein family (UPF0016); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G64150.1). & (reliability: 338.0) & (original description: no original description) 0.9108238377983074 1 evm.model.contig_454.13 no hits & (original description: no original description) 0.8766534195221343 2 evm.model.contig_2612.4 no hits & (original description: no original description) 0.8616530942512823 6 evm.model.contig_452.9 (at3g01480 : 300.0) Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.; cyclophilin 38 (CYP38); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, photosystem II assembly, photosystem II stabilization, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G15520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o49939|tlp40_spiol : 294.0) Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (EC 5.2.1.8) (40 kDa thylakoid lumen PPIase) (40 kDa thylakoid lumen rotamase) - Spinacia oleracea (Spinach) & (reliability: 600.0) & (original description: no original description) 0.8473267940522144 9 evm.model.contig_2121.22 (at3g55400 : 556.0) OVULE ABORTION 1 (OVA1); FUNCTIONS IN: methionine-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 24900 Blast hits to 23813 proteins in 3001 species: Archae - 930; Bacteria - 15835; Metazoa - 410; Fungi - 530; Plants - 181; Viruses - 3; Other Eukaryotes - 7011 (source: NCBI BLink). & (q9zts1|sym_orysa : 107.0) Probable methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS) - Oryza sativa (Rice) & (reliability: 1112.0) & (original description: no original description) 0.8452973380239237 12 evm.model.contig_2286.9 (at4g17300 : 509.0) Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis.; NS1; FUNCTIONS IN: asparagine-tRNA ligase activity; INVOLVED IN: asparaginyl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT1G70980.1); Has 19374 Blast hits to 17086 proteins in 2835 species: Archae - 447; Bacteria - 14373; Metazoa - 505; Fungi - 670; Plants - 294; Viruses - 0; Other Eukaryotes - 3085 (source: NCBI BLink). & (reliability: 1018.0) & (original description: no original description) 0.8345343900305533 15 evm.model.contig_2096.22 (at5g38660 : 103.0) mutant has Altered acclimation responses;; ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT (APE1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2854 (InterPro:IPR021275), Proteasome maturation factor UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana protein match is: Proteasome maturation factor UMP1 (TAIR:AT5G38650.1). & (reliability: 206.0) & (original description: no original description) 0.8302393341212977 7 evm.model.contig_2293.15 no hits & (original description: no original description) 0.8246977728925099 18 evm.model.contig_525.3 no hits & (original description: no original description) 0.8036324269243764 87 evm.model.contig_2054.10 (q6k669|ampl2_orysa : 322.0) Leucine aminopeptidase 2, chloroplast precursor (EC 3.4.11.1) (LAP 2) (Leucyl aminopeptidase 2) (Proline aminopeptidase 2) (EC 3.4.11.5) (Prolyl aminopeptidase 2) - Oryza sativa (Rice) & (at4g30920 : 314.0) Cytosol aminopeptidase family protein; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, protein metabolic process; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: Cytosol aminopeptidase family protein (TAIR:AT4G30910.1); Has 9817 Blast hits to 9813 proteins in 2024 species: Archae - 18; Bacteria - 5432; Metazoa - 663; Fungi - 36; Plants - 122; Viruses - 1; Other Eukaryotes - 3545 (source: NCBI BLink). & (reliability: 628.0) & (original description: no original description) 0.7840247886494437 10 evm.model.contig_669.7 (at4g39970 : 251.0) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT3G48420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 502.0) & (original description: no original description) 0.7833078710601763 53 evm.model.contig_2281.18 (at4g39460 : 159.0) Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.; S-adenosylmethionine carrier 1 (SAMC1); CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine carrier 2 (TAIR:AT1G34065.1). & (p29518|bt1_maize : 94.4) Protein brittle-1, chloroplast precursor - Zea mays (Maize) & (reliability: 318.0) & (original description: no original description) 0.7784745040521429 26 evm.model.contig_2421.7 "(p37706|rrfc_dauca : 178.0) Ribosome recycling factor, chloroplast precursor (Ribosome-releasing factor, chloroplast) (Nuclear located protein D2) (Fragment) - Daucus carota (Carrot) & (at3g63190 : 166.0) The gene encodes a chloroplast ribosome recycling factor homologue. Analysis of mutants revealed its role in the chloroplast development and eary stages of embryo development.; ""ribosome recycling factor, chloroplast precursor"" (RRF); FUNCTIONS IN: copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: Ribosome recycling factor (TAIR:AT3G01800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 332.0) & (original description: no original description)" 0.7762764696159397 13 evm.model.contig_462.7 (at3g47350 : 80.1) Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.; hydroxysteroid dehydrogenase 2 (HSD2); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: hydroxysteroid dehydrogenase 3 (TAIR:AT3G47360.1); Has 116832 Blast hits to 116633 proteins in 3705 species: Archae - 991; Bacteria - 76732; Metazoa - 7566; Fungi - 6679; Plants - 2944; Viruses - 2; Other Eukaryotes - 21918 (source: NCBI BLink). & (reliability: 160.2) & (original description: no original description) 0.7497647050937842 20 evm.model.contig_3450.3 (at1g50380 : 514.0) Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 7641 Blast hits to 7556 proteins in 1214 species: Archae - 80; Bacteria - 3203; Metazoa - 306; Fungi - 27; Plants - 212; Viruses - 0; Other Eukaryotes - 3813 (source: NCBI BLink). & (reliability: 1028.0) & (original description: no original description) 0.7442800094002434 98 evm.model.contig_2289.5 (at3g05410 : 85.9) Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 355 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). & (reliability: 171.8) & (original description: no original description) 0.7413560531803779 22 evm.model.contig_2092.14 no hits & (original description: no original description) 0.7336225083566922 23 evm.model.contig_4487.13 no hits & (original description: no original description) 0.730103461152303 53 evm.model.contig_2187.2 (at2g45770 : 246.0) chloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids.; CPFTSY; FUNCTIONS IN: GTP binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, protein targeting, thylakoid membrane organization, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast, signal recognition particle, endoplasmic reticulum targeting, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Cell division transporter substrate-binding protein FtsY (InterPro:IPR004390); BEST Arabidopsis thaliana protein match is: chloroplast signal recognition particle 54 kDa subunit (TAIR:AT5G03940.1). & (p49970|sr543_horvu : 122.0) Signal recognition particle 54 kDa protein 3 (SRP54) - Hordeum vulgare (Barley) & (reliability: 492.0) & (original description: no original description) 0.7254994398958916 27 evm.model.contig_2358.4 no hits & (original description: no original description) 0.7253978261032913 53 evm.model.contig_2054.5 no hits & (original description: no original description) 0.7193239379795634 30 evm.model.contig_3800.1 no hits & (original description: no original description) 0.7035724099345186 75 evm.model.contig_3476.5 no hits & (original description: no original description) 0.7019493407196457 36 evm.model.contig_4419.6 no hits & (original description: no original description) 0.6994545047791886 53 evm.model.contig_2143.5 no hits & (original description: no original description) 0.6861087647513392 44 evm.model.contig_3488.9 no hits & (original description: no original description) 0.676172702709907 68 evm.model.contig_3515.5 (at2g30710 : 139.0) Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT1G04830.2); Has 4509 Blast hits to 4436 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 2389; Fungi - 783; Plants - 598; Viruses - 0; Other Eukaryotes - 739 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description) 0.6674876466125438 99 evm.model.contig_3528.1 no hits & (original description: no original description) 0.6550907510913411 55 evm.model.contig_3401.26 no hits & (original description: no original description) 0.6512186845831014 58 evm.model.contig_3427.14 (q42967|dcup_tobac : 338.0) Uroporphyrinogen decarboxylase, chloroplast precursor (EC 4.1.1.37) (URO-D) (UPD) - Nicotiana tabacum (Common tobacco) & (at2g40490 : 324.0) HEME2; FUNCTIONS IN: uroporphyrinogen decarboxylase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uroporphyrinogen decarboxylase HemE (InterPro:IPR006361), Uroporphyrinogen decarboxylase (URO-D) (InterPro:IPR000257); BEST Arabidopsis thaliana protein match is: Uroporphyrinogen decarboxylase (TAIR:AT3G14930.2); Has 7458 Blast hits to 7455 proteins in 2032 species: Archae - 137; Bacteria - 4041; Metazoa - 236; Fungi - 136; Plants - 121; Viruses - 0; Other Eukaryotes - 2787 (source: NCBI BLink). & (reliability: 648.0) & (original description: no original description) 0.6457227779327283 60 evm.model.contig_693.15 no hits & (original description: no original description) 0.6383215395997985 62 evm.model.contig_2200.2 no hits & (original description: no original description) 0.6130320237540787 89 evm.model.contig_617.2 (q43843|rpe_soltu : 346.0) Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) (Fragment) - Solanum tuberosum (Potato) & (at5g61410 : 345.0) Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA; D-ribulose-5-phosphate-3-epimerase (RPE); FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: response to cold, carbohydrate metabolic process, response to nematode, embryo development ending in seed dormancy; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 690.0) & (original description: no original description) 0.6087357045692279 97