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Pp1s222_113V6


No description available


Gene families : OG_42_0135523 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Physcomitrella release: Pp1s222_113V6
Cluster HCCA clusters: Sequence Description Alias PCC hrr evm.model.contig_2279.12 (original description: no original description) 0.8527340339281178 2 evm.model.contig_3415.8 no hits & (original description: no original description) 0.8525156107886758 15 evm.model.contig_2110.8 (at5g44740 : 163.0) Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif.; Y-family DNA polymerase H (POLH); CONTAINS InterPro DOMAIN/s: DNA polymerase eta (InterPro:IPR017061), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1); Has 8088 Blast hits to 8015 proteins in 2292 species: Archae - 210; Bacteria - 5635; Metazoa - 500; Fungi - 401; Plants - 163; Viruses - 3; Other Eukaryotes - 1176 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description) 0.840888069937054 24 evm.model.contig_527.27 no hits & (original description: no original description) 0.8353014220826649 34 evm.model.contig_2150.13 (at5g41150 : 195.0) Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair and yeast Rad1 proteins; ULTRAVIOLET HYPERSENSITIVE 1 (UVH1); Has 503 Blast hits to 463 proteins in 204 species: Archae - 16; Bacteria - 0; Metazoa - 188; Fungi - 168; Plants - 53; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). & (reliability: 390.0) & (original description: no original description) 0.8328737621451409 46 evm.model.contig_477.15 (at4g04910 : 586.0) N-ethylmaleimide sensitive factor; N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink). & (p54774|cdc48_soybn : 166.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1172.0) & (original description: no original description) 0.8296553389220842 38 evm.model.contig_4432.17 (q9zts1|sym_orysa : 671.0) Probable methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS) - Oryza sativa (Rice) & (at4g13780 : 661.0) methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative; FUNCTIONS IN: methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, methionyl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G40660.1); Has 17985 Blast hits to 17920 proteins in 2983 species: Archae - 503; Bacteria - 10276; Metazoa - 591; Fungi - 596; Plants - 228; Viruses - 3; Other Eukaryotes - 5788 (source: NCBI BLink). & (reliability: 1322.0) & (original description: no original description) 0.8242337167931415 17 evm.model.contig_2296.2 (at3g44340 : 270.0) homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.; clone eighty-four (CEF); FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: response to oxidative stress, vesicle-mediated transport; LOCATED IN: COPII vesicle coat, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G32640.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 540.0) & (original description: no original description) 0.823740917849043 11 evm.model.contig_3597.5 no hits & (original description: no original description) 0.8222917294505216 34 evm.model.contig_4417.3 (at1g18260 : 98.6) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 197.2) & (original description: no original description) 0.82138400791361 35 evm.model.contig_730.3 (at5g09350 : 175.0) Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta2. Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma. PI-4Kbeta2 is 83% identical to PI-4kbeta1 encoded by At5g64070. Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta1, leads to the formation of abnormal root hairs.; phosphatidylinositol 4-OH kinase beta2 (PI-4KBETA2); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: phosphoinositide biosynthetic process, root hair cell tip growth, pollen tube growth; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Phosphatidylinositol Kinase (InterPro:IPR015433), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 4-OH kinase beta1 (TAIR:AT5G64070.1); Has 7223 Blast hits to 5858 proteins in 401 species: Archae - 10; Bacteria - 146; Metazoa - 2545; Fungi - 1184; Plants - 443; Viruses - 52; Other Eukaryotes - 2843 (source: NCBI BLink). & (p42348|pi3k2_soybn : 85.1) Phosphatidylinositol 3-kinase, nodule isoform (EC 2.7.1.137) (PI3-kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-1) - Glycine max (Soybean) & (reliability: 350.0) & (original description: no original description) 0.82136125540682 65 evm.model.contig_4403.6 no hits & (original description: no original description) 0.8203386617052779 26 evm.model.contig_566.3 no hits & (original description: no original description) 0.8203192934913807 15 evm.model.contig_614.4 no hits & (original description: no original description) 0.8182130029041665 17 evm.model.contig_3410.6 no hits & (original description: no original description) 0.8120047279429614 84 evm.model.contig_476.1 no hits & (original description: no original description) 0.8115892194310431 19 evm.model.contig_2445.4 no hits & (original description: no original description) 0.8080194414687879 62 evm.model.contig_4467.15 no hits & (original description: no original description) 0.8065268879700196 52 evm.model.contig_2313.3 no hits & (original description: no original description) 0.8047522517613217 91 evm.model.contig_462.17 no hits & (original description: no original description) 0.8035340249022584 64 evm.model.contig_2194.5 no hits & (original description: no original description) 0.8020691667203156 93 evm.model.contig_730.4 no hits & (original description: no original description) 0.8020373907825193 30 evm.model.contig_510.7 no hits & (original description: no original description) 0.800661837549654 50 evm.model.contig_497.2 no hits & (original description: no original description) 0.8003253598195541 100 evm.model.contig_2355.2 no hits & (original description: no original description) 0.798928236557911 31 evm.model.contig_2132.3 (at5g39440 : 200.0) SNF1-related protein kinase 1.3 (SnRK1.3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 134559 Blast hits to 132128 proteins in 4775 species: Archae - 156; Bacteria - 15425; Metazoa - 49691; Fungi - 13625; Plants - 32691; Viruses - 538; Other Eukaryotes - 22433 (source: NCBI BLink). & (p49101|cdpk2_maize : 187.0) Calcium-dependent protein kinase 2 (EC 2.7.11.1) (CDPK 2) - Zea mays (Maize) & (reliability: 400.0) & (original description: no original description) 0.7983000127497811 39 evm.model.contig_3601.3 (at4g21470 : 110.0) Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN.; riboflavin kinase/FMN hydrolase (FMN/FHY); FUNCTIONS IN: riboflavin kinase activity, FMN adenylyltransferase activity; INVOLVED IN: riboflavin biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Riboflavin kinase (InterPro:IPR015865), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G57440.1); Has 19964 Blast hits to 19956 proteins in 2653 species: Archae - 146; Bacteria - 15844; Metazoa - 398; Fungi - 526; Plants - 433; Viruses - 3; Other Eukaryotes - 2614 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description) 0.7946906789041118 58 evm.model.contig_3743.1 no hits & (original description: no original description) 0.7912840607038515 37 evm.model.contig_429.6 no hits & (original description: no original description) 0.7889760572117761 61 evm.model.contig_3394.3 (at4g12590 : 120.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF106, transmembrane (InterPro:IPR002809), Uncharacterised conserved protein UCP010045, transmembrane eukaryotic (InterPro:IPR008568); Has 409 Blast hits to 409 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 136; Plants - 53; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.7870185669460369 46 evm.model.contig_531.1 no hits & (original description: no original description) 0.7867234997294817 41 evm.model.contig_3410.7 no hits & (original description: no original description) 0.7832441997408586 42 evm.model.contig_2095.5 (at4g29530 : 108.0) Pyridoxal phosphate phosphatase-related protein; FUNCTIONS IN: phosphatase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase, PHOSPHO2 (InterPro:IPR016965), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383), Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate phosphatase-related protein (TAIR:AT1G17710.1); Has 373 Blast hits to 361 proteins in 111 species: Archae - 0; Bacteria - 31; Metazoa - 175; Fungi - 16; Plants - 106; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description) 0.7829651055414376 43 evm.model.contig_2489.2 no hits & (original description: no original description) 0.7777898126368958 62 evm.model.contig_2171.1 no hits & (original description: no original description) 0.7751138942779907 75 evm.model.contig_4543.1 (at3g45640 : 409.0) Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.; mitogen-activated protein kinase 3 (MPK3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 6 (TAIR:AT2G43790.1); Has 124285 Blast hits to 122929 proteins in 4636 species: Archae - 100; Bacteria - 13249; Metazoa - 47024; Fungi - 12588; Plants - 30092; Viruses - 485; Other Eukaryotes - 20747 (source: NCBI BLink). & (q40884|mapk_pethy : 405.0) Mitogen-activated protein kinase homolog 1 (EC 2.7.11.24) (PMEK1) - Petunia hybrida (Petunia) & (reliability: 818.0) & (original description: no original description) 0.7704965521269429 55 evm.model.contig_4476.12 (at5g60550 : 145.0) Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.; geminivirus rep interacting kinase 2 (GRIK2); CONTAINS InterPro DOMAIN/s: Calcium/calmodulin-dependent protein kinase kinase (InterPro:IPR020657), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: geminivirus rep interacting kinase 1 (TAIR:AT3G45240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7xqp4|sapk7_orysa : 114.0) Serine/threonine-protein kinase SAPK7 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 7) - Oryza sativa (Rice) & (reliability: 290.0) & (original description: no original description) 0.7693715651202215 56 evm.model.contig_3426.20 no hits & (original description: no original description) 0.7688738478838831 69 evm.model.contig_2271.7 (q9sbw3|pp2a4_orysa : 537.0) Serine/threonine-protein phosphatase PP2A-4 catalytic subunit (EC 3.1.3.16) - Oryza sativa (Rice) & (at2g42500 : 526.0) Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].; protein phosphatase 2A-3 (PP2A-3); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-4 (TAIR:AT3G58500.1). & (reliability: 1052.0) & (original description: no original description) 0.7651367149012521 60 evm.model.contig_2356.2 (at1g48950 : 83.6) C3HC zinc finger-like ; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC-like (InterPro:IPR012935); BEST Arabidopsis thaliana protein match is: IAP-like protein 1 (TAIR:AT1G17210.1); Has 249 Blast hits to 238 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 80; Plants - 75; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.7617786934801227 81 evm.model.contig_2273.3 (at4g24400 : 218.0) Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. Regulates the low-affinity phase of the primary nitrate response.; CBL-interacting protein kinase 8 (CIPK8); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to nitrate, root development, response to glucose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G35410.1); Has 132609 Blast hits to 130467 proteins in 4740 species: Archae - 192; Bacteria - 15427; Metazoa - 49318; Fungi - 12831; Plants - 32044; Viruses - 538; Other Eukaryotes - 22259 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 211.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (gnl|cdd|68872 : 87.8) no description available & (reliability: 436.0) & (original description: no original description) 0.7595375323118535 68 evm.model.contig_3491.7 no hits & (original description: no original description) 0.7564101767673603 70 evm.model.contig_3383.8 no hits & (original description: no original description) 0.7506894223568933 76 evm.model.contig_564.3 no hits & (original description: no original description) 0.7471494997486131 82 evm.model.contig_473.2 no hits & (original description: no original description) 0.7428950362788087 91