Sequence Description Alias PCC hrr evm.model.contig_4476.13 no hits & (original description: no original description) 0.945249776270508 2 evm.model.contig_3402.2 no hits & (original description: no original description) 0.9281804987197918 2 evm.model.contig_2059.32 (at5g64940 : 429.0) Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.; ABC2 homolog 13 (ATH13); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G07700.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 858.0) & (original description: no original description) 0.9242582684987399 3 evm.model.contig_2046.7 (at4g09340 : 183.0) SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 1270 Blast hits to 1182 proteins in 217 species: Archae - 0; Bacteria - 1; Metazoa - 551; Fungi - 310; Plants - 183; Viruses - 1; Other Eukaryotes - 224 (source: NCBI BLink). & (reliability: 366.0) & (original description: no original description) 0.9222775398490357 4 evm.model.contig_4405.14 no hits & (original description: no original description) 0.9194679361007589 5 evm.model.contig_2064.11 (original description: no original description) 0.9156196374569981 7 evm.model.contig_457.6 (at5g14460 : 103.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, transporter activity; INVOLVED IN: pseudouridine synthesis, RNA modification, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase II, TruB, N-terminal, bacterial-type (InterPro:IPR014780), Pseudouridine synthase II, TruB, N-terminal (InterPro:IPR002501); BEST Arabidopsis thaliana protein match is: homologue of NAP57 (TAIR:AT3G57150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description) 0.9119794108391707 7 evm.model.contig_4448.9 no hits & (original description: no original description) 0.9112669479463248 13 evm.model.contig_4443.20 no hits & (original description: no original description) 0.9062222815477344 9 evm.model.contig_3571.1 no hits & (original description: no original description) 0.9028931379996498 43 evm.model.contig_4483.3 (at1g73820 : 154.0) Ssu72-like family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II subunit A (InterPro:IPR006811); Has 454 Blast hits to 453 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 149; Plants - 48; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description) 0.9027883645638685 11 evm.model.contig_2157.5 (original description: no original description) 0.8980289006071459 12 evm.model.contig_2015.5 no hits & (original description: no original description) 0.8964923797220893 13 evm.model.contig_476.2 no hits & (original description: no original description) 0.8960610176137804 14 evm.model.contig_3490.17 (at1g22882 : 94.7) Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G71360.1); Has 2190 Blast hits to 1928 proteins in 337 species: Archae - 60; Bacteria - 185; Metazoa - 803; Fungi - 277; Plants - 164; Viruses - 19; Other Eukaryotes - 682 (source: NCBI BLink). & (reliability: 189.4) & (original description: no original description) 0.8952076587198367 24 evm.model.contig_583.7 no hits & (original description: no original description) 0.8923886067026626 16 evm.model.contig_437.6 no hits & (original description: no original description) 0.8878606555384885 37 evm.model.contig_3573.11 (at5g10790 : 124.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 22 (UBP22); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 23 (TAIR:AT5G57990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 248.0) & (original description: no original description) 0.8874376239872431 46 evm.model.contig_544.4 (at1g28060 : 160.0) Pre-mRNA-splicing factor 3; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT3G55930.1); Has 22923 Blast hits to 12760 proteins in 707 species: Archae - 18; Bacteria - 1085; Metazoa - 11525; Fungi - 3053; Plants - 1999; Viruses - 93; Other Eukaryotes - 5150 (source: NCBI BLink). & (reliability: 320.0) & (original description: no original description) 0.8870954136982616 19 evm.model.contig_2008.6 no hits & (original description: no original description) 0.8835777782428368 20 evm.model.contig_2033.32 (at5g14460 : 85.5) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, transporter activity; INVOLVED IN: pseudouridine synthesis, RNA modification, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase II, TruB, N-terminal, bacterial-type (InterPro:IPR014780), Pseudouridine synthase II, TruB, N-terminal (InterPro:IPR002501); BEST Arabidopsis thaliana protein match is: homologue of NAP57 (TAIR:AT3G57150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description) 0.8826852013665327 21 evm.model.contig_2018.4 no hits & (original description: no original description) 0.8808686573663814 22 evm.model.contig_2118.6 no hits & (original description: no original description) 0.8764730414625181 23 evm.model.contig_3396.9 (at3g08910 : 231.0) DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT5G01390.1); Has 28100 Blast hits to 27785 proteins in 3479 species: Archae - 185; Bacteria - 10426; Metazoa - 4606; Fungi - 2650; Plants - 2881; Viruses - 19; Other Eukaryotes - 7333 (source: NCBI BLink). & (q04960|dnjh_cucsa : 125.0) DnaJ protein homolog (DNAJ-1) - Cucumis sativus (Cucumber) & (reliability: 462.0) & (original description: no original description) 0.8759869582158308 24 evm.model.contig_2181.9 no hits & (original description: no original description) 0.8757040563684254 40 evm.model.contig_3649.2 no hits & (original description: no original description) 0.8740505486449388 36 evm.model.contig_451.4 no hits & (original description: no original description) 0.8735853234689553 27 evm.model.contig_488.3 no hits & (original description: no original description) 0.8735229250704523 28 evm.model.contig_2285.6 (original description: no original description) 0.8729720560659753 29 evm.model.contig_3448.7 no hits & (original description: no original description) 0.8726425861515403 36 evm.model.contig_2359.2 no hits & (original description: no original description) 0.8717305985838784 38 evm.model.contig_4418.19 (at1g76810 : 696.0) eukaryotic translation initiation factor 2 (eIF-2) family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 (eIF-2) family protein (TAIR:AT1G76720.1); Has 208612 Blast hits to 135501 proteins in 4311 species: Archae - 1435; Bacteria - 54544; Metazoa - 70572; Fungi - 21896; Plants - 9806; Viruses - 724; Other Eukaryotes - 49635 (source: NCBI BLink). & (p57997|if2c_phavu : 119.0) Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) - Phaseolus vulgaris (Kidney bean) (French bean) & (gnl|cdd|68872 : 89.3) no description available & (reliability: 1392.0) & (original description: no original description) 0.871393093519176 40 evm.model.contig_4424.4 no hits & (original description: no original description) 0.8712204961655705 33 evm.model.contig_2502.12 no hits & (original description: no original description) 0.8686063551247462 46 evm.model.contig_685.4 no hits & (original description: no original description) 0.8682289224159281 82 evm.model.contig_636.1 no hits & (original description: no original description) 0.8669206627174648 36 evm.model.contig_4432.10 (at5g54830 : 134.0) DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein; FUNCTIONS IN: dopamine beta-monooxygenase activity, monooxygenase activity; INVOLVED IN: histidine catabolic process, metabolic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Electron transfer DM13 (InterPro:IPR019545), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593), DOMON (InterPro:IPR013050); BEST Arabidopsis thaliana protein match is: Cytochrome b561/ferric reductase transmembrane with DOMON related domain (TAIR:AT3G61750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description) 0.8666593725830588 38 evm.model.contig_2033.20 (at3g18430 : 110.0) Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calmodulin 9 (TAIR:AT3G51920.1). & (reliability: 220.0) & (original description: no original description) 0.8665557305848263 49 evm.model.contig_3423.26 (at3g50860 : 127.0) Clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G19790.1); Has 2004 Blast hits to 2002 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 926; Fungi - 430; Plants - 303; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). & (o50016|ap2s1_maize : 99.8) AP-2 complex subunit sigma-1 (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin assembly protein 2 small chain) - Zea mays (Maize) & (reliability: 254.0) & (original description: no original description) 0.8664940835403657 39 evm.model.contig_2150.13 (at5g41150 : 195.0) Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair and yeast Rad1 proteins; ULTRAVIOLET HYPERSENSITIVE 1 (UVH1); Has 503 Blast hits to 463 proteins in 204 species: Archae - 16; Bacteria - 0; Metazoa - 188; Fungi - 168; Plants - 53; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). & (reliability: 390.0) & (original description: no original description) 0.8661063715189733 40 evm.model.contig_3427.7 no hits & (original description: no original description) 0.865069964715386 41 evm.model.contig_482.16 (at2g35450 : 158.0) catalytics;hydrolases; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 2 (InterPro:IPR006992); Has 1373 Blast hits to 1373 proteins in 381 species: Archae - 4; Bacteria - 1000; Metazoa - 6; Fungi - 6; Plants - 45; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink). & (reliability: 316.0) & (original description: no original description) 0.8647246819354727 42 evm.model.contig_497.5 no hits & (original description: no original description) 0.8639099324701248 45 evm.model.contig_3405.8 no hits & (original description: no original description) 0.863532528983575 44 evm.model.contig_2044.27 no hits & (original description: no original description) 0.8629180946274821 45 evm.model.contig_496.4 no hits & (original description: no original description) 0.8620588624230642 46 evm.model.contig_604.2 no hits & (original description: no original description) 0.8616841940568792 81 evm.model.contig_429.7 (at2g26990 : 456.0) Represses photomorphogenesis and induces skotomorphogenesis in the dark.; FUSCA 12 (FUS12); INVOLVED IN: cullin deneddylation, photomorphogenesis, protein catabolic process; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: non-ATPase subunit 9 (TAIR:AT1G29150.1); Has 881 Blast hits to 877 proteins in 239 species: Archae - 2; Bacteria - 9; Metazoa - 323; Fungi - 235; Plants - 190; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 912.0) & (original description: no original description) 0.8598611234192255 48 evm.model.contig_2194.4 no hits & (original description: no original description) 0.8590512686429356 81 evm.model.contig_4417.3 (at1g18260 : 98.6) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 197.2) & (original description: no original description) 0.8579224505715854 50 evm.model.contig_2274.8 no hits & (original description: no original description) 0.8568061943563166 51 evm.model.contig_2360.1 no hits & (original description: no original description) 0.8553619399852471 52 evm.model.contig_482.7 (at4g37200 : 87.0) Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.; HIGH CHLOROPHYLL FLUORESCENCE 164 (HCF164); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin X (TAIR:AT1G50320.1); Has 12708 Blast hits to 12383 proteins in 2440 species: Archae - 136; Bacteria - 7708; Metazoa - 1002; Fungi - 428; Plants - 950; Viruses - 3; Other Eukaryotes - 2481 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description) 0.8552616247412037 53 evm.model.contig_2059.4 no hits & (original description: no original description) 0.8543621001737387 54 evm.model.contig_463.3 (at3g20650 : 234.0) mRNA capping enzyme family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: mRNA capping; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: mRNA (guanine-N(7))-methyltransferase (InterPro:IPR016899), mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G52210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6z9u7|mces1_orysa : 225.0) mRNA cap guanine-N7 methyltransferase 1 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 1) (mRNA cap methyltransferase 1) - Oryza sativa (Rice) & (reliability: 468.0) & (original description: no original description) 0.8526179262175495 56 evm.model.contig_548.7 no hits & (original description: no original description) 0.8523639476268392 57 evm.model.contig_2036.8 (at3g10350 : 227.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: Anion-transporting ATPase (TAIR:AT5G60730.1). & (reliability: 428.0) & (original description: no original description) 0.8522244195056201 62 evm.model.contig_564.8 no hits & (original description: no original description) 0.8513399206513859 91 evm.model.contig_3441.11 no hits & (original description: no original description) 0.8500687953652345 60 evm.model.contig_2139.11 (at3g26570 : 182.0) low affinity phosphate transporter; phosphate transporter 2;1 (PHT2;1); FUNCTIONS IN: low affinity phosphate transmembrane transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate transporter (InterPro:IPR001204); Has 12859 Blast hits to 5765 proteins in 1814 species: Archae - 502; Bacteria - 8606; Metazoa - 781; Fungi - 657; Plants - 230; Viruses - 6; Other Eukaryotes - 2077 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description) 0.8488908180811555 94 evm.model.contig_2194.12 no hits & (original description: no original description) 0.8485626345118776 64 evm.model.contig_2350.4 no hits & (original description: no original description) 0.847891182973096 65 evm.model.contig_462.17 no hits & (original description: no original description) 0.8451393424058822 66 evm.model.contig_3637.3 no hits & (original description: no original description) 0.843961342450372 67 evm.model.contig_2313.3 no hits & (original description: no original description) 0.8423618173686721 71 evm.model.contig_2500.6 no hits & (original description: no original description) 0.841502037310215 72 evm.model.contig_499.3 (at1g62750 : 175.0) Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants.; SNOWY COTYLEDON 1 (SCO1); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, ATP binding; INVOLVED IN: post-embryonic development, chloroplast organization, seed germination; LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFG/EF2 (InterPro:IPR004540), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EFG/EF2 protein (TAIR:AT2G45030.1); Has 79823 Blast hits to 67706 proteins in 7071 species: Archae - 929; Bacteria - 47320; Metazoa - 4453; Fungi - 5428; Plants - 1613; Viruses - 3; Other Eukaryotes - 20077 (source: NCBI BLink). & (p34811|efgc_soybn : 175.0) Elongation factor G, chloroplast precursor (EF-G) - Glycine max (Soybean) & (reliability: 350.0) & (original description: no original description) 0.8412389995667883 73 evm.model.contig_2079.3 no hits & (original description: no original description) 0.8398665019019825 74 evm.model.contig_2273.7 (at5g19300 : 172.0) CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description) 0.8384858442867933 80 evm.model.contig_752.2 no hits & (original description: no original description) 0.8371329241015025 76 evm.model.contig_4438.25 (p37384|dmc1_lillo : 322.0) Meiotic recombination protein DMC1 homolog - Lilium longiflorum (Trumpet lily) & (at3g22880 : 319.0) Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.; DISRUPTION OF MEIOTIC CONTROL 1 (DMC1); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, meiosis, chiasma assembly, reciprocal meiotic recombination, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), ATPase, AAA+ type, core (InterPro:IPR003593), Meiotic recombinase Dmc1 (InterPro:IPR011940), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: RAS associated with diabetes protein 51 (TAIR:AT5G20850.1); Has 11998 Blast hits to 11924 proteins in 3797 species: Archae - 689; Bacteria - 8026; Metazoa - 742; Fungi - 447; Plants - 503; Viruses - 22; Other Eukaryotes - 1569 (source: NCBI BLink). & (reliability: 600.0) & (original description: no original description) 0.8370738775561992 77 evm.model.contig_4466.6 (at1g03910 : 191.0) EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2). & (reliability: 382.0) & (original description: no original description) 0.8370409945277107 78 evm.model.contig_2084.5 (at3g49660 : 181.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (p93107|pf20_chlre : 164.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 336.0) & (original description: no original description) 0.8368006731779128 79 evm.model.contig_2104.5 no hits & (original description: no original description) 0.8355065151232374 84 evm.model.contig_3453.3 (at2g28880 : 463.0) embryo defective 1997 (emb1997); FUNCTIONS IN: oxo-acid-lyase activity, catalytic activity, anthranilate synthase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Para-aminobenzoate synthase, component I (InterPro:IPR005802), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase 2 (TAIR:AT2G29690.1); Has 26955 Blast hits to 26481 proteins in 3128 species: Archae - 525; Bacteria - 17829; Metazoa - 510; Fungi - 766; Plants - 261; Viruses - 0; Other Eukaryotes - 7064 (source: NCBI BLink). & (reliability: 926.0) & (original description: no original description) 0.8347042233188 82 evm.model.contig_522.25 (at5g57300 : 237.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G23360.1). & (reliability: 474.0) & (original description: no original description) 0.8339418028333324 84 evm.model.contig_2502.15 no hits & (original description: no original description) 0.8331802422050169 85 evm.model.contig_4436.4 no hits & (original description: no original description) 0.8330138070101765 86 evm.model.contig_4418.2 (q6zdq1|agm1_orysa : 337.0) Phosphoacetylglucosamine mutase (EC 5.4.2.3) (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) - Oryza sativa (Rice) & (at5g18070 : 326.0) encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).; DNA-DAMAGE-REPAIR/TOLERATION 101 (DRT101); FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, phosphoacetylglucosamine mutase activity; INVOLVED IN: response to UV, photoreactive repair; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Phosphoacetylglucosamine mutase (InterPro:IPR016657), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); Has 6617 Blast hits to 6213 proteins in 2284 species: Archae - 117; Bacteria - 4667; Metazoa - 169; Fungi - 157; Plants - 47; Viruses - 0; Other Eukaryotes - 1460 (source: NCBI BLink). & (reliability: 652.0) & (original description: no original description) 0.8328510482102122 87 evm.model.contig_2171.1 no hits & (original description: no original description) 0.8312429058959697 88 evm.model.contig_468.7 no hits & (original description: no original description) 0.8310671924251236 89 evm.model.contig_560.5 (at2g38960 : 147.0) endoplasmic reticulum oxidoreductin; endoplasmic reticulum oxidoreductins 2 (ERO2); FUNCTIONS IN: FAD binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: oxidation reduction, protein thiol-disulfide exchange; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Endoplasmic reticulum oxidoreductin 1 (InterPro:IPR007266); BEST Arabidopsis thaliana protein match is: endoplasmic reticulum oxidoreductins 1 (TAIR:AT1G72280.1). & (reliability: 294.0) & (original description: no original description) 0.830428401229886 90 evm.model.contig_2095.14 no hits & (original description: no original description) 0.8295066534864598 92 evm.model.contig_3410.6 no hits & (original description: no original description) 0.8286479115408211 95 evm.model.contig_451.2 (at1g79950 : 448.0) RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3149 Blast hits to 2661 proteins in 831 species: Archae - 223; Bacteria - 987; Metazoa - 718; Fungi - 431; Plants - 207; Viruses - 6; Other Eukaryotes - 577 (source: NCBI BLink). & (reliability: 896.0) & (original description: no original description) 0.8277813184752678 98 evm.model.contig_3609.2 no hits & (original description: no original description) 0.8272330205546181 99 evm.model.contig_2139.27 no hits & (original description: no original description) 0.8271630441758454 100