Sequence Description Alias PCC hrr PSME_00006400-RA (at3g21430 : 708.0) ALWAYS EARLY 3 (ALY3); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP ;Myb-like DNA-binding domain (TAIR:AT3G05380.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1416.0) & (original description: no original description) 0.8871424422772787 9 PSME_00001017-RA (at1g04210 : 620.0) Encodes a putative Raf-related kinase.; Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G31170.3); Has 130301 Blast hits to 104916 proteins in 2869 species: Archae - 120; Bacteria - 15185; Metazoa - 50195; Fungi - 9983; Plants - 37286; Viruses - 367; Other Eukaryotes - 17165 (source: NCBI BLink). & (reliability: 1240.0) & (original description: no original description) 0.8784981388456949 2 PSME_00033520-RA (q2qmx9|aca1_orysa : 1323.0) Calcium-transporting ATPase 1, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) - Oryza sativa (Rice) & (at4g37640 : 1298.0) Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor.; calcium ATPase 2 (ACA2); FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding, calcium ion transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: Cation transporter/ E1-E2 ATPase family protein (TAIR:AT2G22950.1); Has 47430 Blast hits to 34684 proteins in 3201 species: Archae - 904; Bacteria - 32793; Metazoa - 4036; Fungi - 2849; Plants - 2078; Viruses - 3; Other Eukaryotes - 4767 (source: NCBI BLink). & (reliability: 2596.0) & (original description: no original description) 0.8738223808334312 52 PSME_00020767-RA (at2g02090 : 793.0) ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 5 (TAIR:AT2G13370.1); Has 19948 Blast hits to 16374 proteins in 2059 species: Archae - 127; Bacteria - 6550; Metazoa - 3755; Fungi - 4012; Plants - 1782; Viruses - 219; Other Eukaryotes - 3503 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 155.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1586.0) & (original description: no original description) 0.8711058873309538 5 PSME_00014276-RA (at3g55320 : 2001.0) P-glycoprotein 20 (PGP20); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140); BEST Arabidopsis thaliana protein match is: P-glycoprotein 6 (TAIR:AT2G39480.1); Has 718468 Blast hits to 361578 proteins in 4093 species: Archae - 12537; Bacteria - 570379; Metazoa - 18035; Fungi - 12093; Plants - 8938; Viruses - 13; Other Eukaryotes - 96473 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 434.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 4002.0) & (original description: no original description) 0.8652205298744532 26 PSME_00020105-RA (at5g42080 : 726.0) Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.; dynamin-like protein (DL1); CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1). & (reliability: 1432.0) & (original description: no original description) 0.8526650782161554 19 PSME_00022782-RA (at5g64420 : 437.0) DNA polymerase V family; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase V (InterPro:IPR007015); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 874.0) & (original description: no original description) 0.8508311528849253 86 PSME_00017472-RA (at5g25270 : 270.0) Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G42220.1); Has 11489 Blast hits to 5746 proteins in 742 species: Archae - 0; Bacteria - 401; Metazoa - 4954; Fungi - 1390; Plants - 2430; Viruses - 186; Other Eukaryotes - 2128 (source: NCBI BLink). & (reliability: 520.0) & (original description: no original description) 0.8498862058508052 14 PSME_00009646-RA (at3g24180 : 504.0) Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: glucosylceramidase activity, catalytic activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT5G49900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1008.0) & (original description: no original description) 0.8489319643642537 34 PSME_00036824-RA (at5g62090 : 384.0) SEUSS-like 2 (SLK2); BEST Arabidopsis thaliana protein match is: SEUSS-like 1 (TAIR:AT4G25520.1); Has 38958 Blast hits to 16422 proteins in 905 species: Archae - 6; Bacteria - 1880; Metazoa - 14538; Fungi - 4050; Plants - 2632; Viruses - 363; Other Eukaryotes - 15489 (source: NCBI BLink). & (reliability: 706.0) & (original description: no original description) 0.8444230047776449 48 PSME_00040637-RA (at2g35610 : 312.0) xyloglucanase 113 (XEG113); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G70630.1); Has 390 Blast hits to 386 proteins in 36 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). & (reliability: 624.0) & (original description: no original description) 0.8439096922472238 46 PSME_00010126-RA (at3g13530 : 546.0) MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules.; mitogen-activated protein kinase kinase kinase 7 (MAPKKK7); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: plasma membrane organization, pollen development; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ovule developmental stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 6 (TAIR:AT3G07980.1); Has 137235 Blast hits to 134768 proteins in 5401 species: Archae - 190; Bacteria - 15422; Metazoa - 52001; Fungi - 13364; Plants - 33616; Viruses - 670; Other Eukaryotes - 21972 (source: NCBI BLink). & (reliability: 1092.0) & (original description: no original description) 0.8357776506987935 16 PSME_00048649-RA (at3g07810 : 303.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G47620.2); Has 54120 Blast hits to 30425 proteins in 1467 species: Archae - 38; Bacteria - 13586; Metazoa - 19029; Fungi - 4969; Plants - 7799; Viruses - 151; Other Eukaryotes - 8548 (source: NCBI BLink). & (p49313|roc1_nicpl : 84.7) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 606.0) & (original description: no original description) 0.8346932317261961 64 PSME_00031044-RA (q04960|dnjh_cucsa : 603.0) DnaJ protein homolog (DNAJ-1) - Cucumis sativus (Cucumber) & (at3g44110 : 593.0) homologous to the co-chaperon DNAJ protein from E coli; DNAJ homologue 3 (ATJ3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, response to salt stress, regulation of ATPase activity; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ homologue 2 (TAIR:AT5G22060.1); Has 26521 Blast hits to 26345 proteins in 3465 species: Archae - 213; Bacteria - 10015; Metazoa - 4280; Fungi - 2432; Plants - 2547; Viruses - 88; Other Eukaryotes - 6946 (source: NCBI BLink). & (reliability: 1186.0) & (original description: no original description) 0.8334471323956794 73 PSME_00033844-RA (at3g27190 : 462.0) One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.; uridine kinase-like 2 (UKL2); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase/uracil phosphoribosyltransferase 1 (TAIR:AT5G40870.1); Has 12747 Blast hits to 12735 proteins in 2617 species: Archae - 215; Bacteria - 9790; Metazoa - 531; Fungi - 482; Plants - 585; Viruses - 2; Other Eukaryotes - 1142 (source: NCBI BLink). & (reliability: 924.0) & (original description: no original description) 0.8257679872826006 20 PSME_00000725-RA (at4g00990 : 384.0) Transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 966 Blast hits to 671 proteins in 113 species: Archae - 0; Bacteria - 8; Metazoa - 538; Fungi - 54; Plants - 301; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 768.0) & (original description: no original description) 0.8242021861498657 34 PSME_00030654-RA (at5g49580 : 471.0) Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G16680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 942.0) & (original description: no original description) 0.8218472917428986 82 PSME_00019728-RA (at2g01690 : 800.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Protein of unknown function DUF3434 (InterPro:IPR021841), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1600.0) & (original description: no original description) 0.8208421113265884 24 PSME_00032646-RA (at1g53165 : 322.0) ATMAP4K ALPHA1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response, response to wounding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G15220.1). & (reliability: 644.0) & (original description: no original description) 0.8150056190724032 73 PSME_00021852-RA (at5g04240 : 319.0) Early Flowering 6 (ELF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a repressor in the photoperiod pathway. ELF6 interacts with BES1 in a Y2H assay, in vitro, and in Arabidosis protoplasts (based on BiFC). ELF6 may play a role in brassinosteroid signaling by affecting histone methylation in the promoters of BR-responsive genes.; EARLY FLOWERING 6 (ELF6); CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C2H2-like (InterPro:IPR015880), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, C2H2-type (InterPro:IPR007087), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: relative of early flowering 6 (TAIR:AT3G48430.1); Has 112631 Blast hits to 36360 proteins in 1127 species: Archae - 0; Bacteria - 99; Metazoa - 105700; Fungi - 2573; Plants - 699; Viruses - 11; Other Eukaryotes - 3549 (source: NCBI BLink). & (reliability: 638.0) & (original description: no original description) 0.8119651655076331 66 PSME_00009645-RA (at3g24180 : 649.0) Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: glucosylceramidase activity, catalytic activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT5G49900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1298.0) & (original description: no original description) 0.8114621853850387 37 PSME_00002235-RA (at5g04430 : 268.0) Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication.; binding to TOMV RNA 1L (long form) (BTR1L); CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 5613 Blast hits to 2614 proteins in 213 species: Archae - 0; Bacteria - 8; Metazoa - 3980; Fungi - 530; Plants - 787; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink). & (reliability: 536.0) & (original description: no original description) 0.8089252768089861 36 PSME_00027089-RA (at4g26910 : 143.0) Dihydrolipoamide succinyltransferase; FUNCTIONS IN: zinc ion binding, acyltransferase activity; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide succinyltransferase (InterPro:IPR006255), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide succinyltransferase (TAIR:AT5G55070.1); Has 24826 Blast hits to 20752 proteins in 2368 species: Archae - 154; Bacteria - 14691; Metazoa - 760; Fungi - 487; Plants - 406; Viruses - 4; Other Eukaryotes - 8324 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description) 0.8058915312923614 74 PSME_00032154-RA (at3g06670 : 275.0) binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49390.1). & (reliability: 550.0) & (original description: no original description) 0.8052528227807861 44 PSME_00016664-RA (at3g05090 : 362.0) Encodes a DCAF protein. Mutants are defective in lateral root development and suggest roles for DDB1≠Cul4ñmediated protein degradation in regulating auxin accumulation during lateral root primordium development and lateral root meristem emergence.; LATERAL ROOT STIMULATOR 1 (LRS1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: lateral root formation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Protein of unknown function DUF3337 (InterPro:IPR021772), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT1G62020.1); Has 59803 Blast hits to 26869 proteins in 729 species: Archae - 50; Bacteria - 7042; Metazoa - 23770; Fungi - 14096; Plants - 7202; Viruses - 3; Other Eukaryotes - 7640 (source: NCBI BLink). & (reliability: 724.0) & (original description: no original description) 0.8051453880713386 53 PSME_00016927-RA no hits & (original description: no original description) 0.8047660436145235 82 PSME_00032093-RA (at5g27450 : 172.0) Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway.; mevalonate kinase (MK); FUNCTIONS IN: mevalonate kinase activity; INVOLVED IN: isoprenoid biosynthetic process, metabolic process, phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate kinase (InterPro:IPR006205), GHMP kinase, ATP-binding, conserved site (InterPro:IPR006203), Mevalonate/galactokinase (InterPro:IPR006206), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750). & (reliability: 344.0) & (original description: no original description) 0.8018463547858705 54 PSME_00008913-RA (at3g48050 : 645.0) BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription factor IIS, N-terminal (InterPro:IPR017923), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1290.0) & (original description: no original description) 0.8016316141822691 98 PSME_00039528-RA (at3g14400 : 418.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 25 (UBP25); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 23 (TAIR:AT5G57990.1); Has 8659 Blast hits to 7314 proteins in 254 species: Archae - 0; Bacteria - 9; Metazoa - 4447; Fungi - 1449; Plants - 1041; Viruses - 9; Other Eukaryotes - 1704 (source: NCBI BLink). & (reliability: 836.0) & (original description: no original description) 0.8009793258758253 56 PSME_00020464-RA (at1g79550 : 147.0) Encodes cytosolic phosphoglycerate kinase (PGK).; phosphoglycerate kinase (PGK); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, apoplast, plasma membrane, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10844 Blast hits to 10818 proteins in 3011 species: Archae - 254; Bacteria - 5218; Metazoa - 451; Fungi - 193; Plants - 517; Viruses - 0; Other Eukaryotes - 4211 (source: NCBI BLink). & (q42962|pgky_tobac : 140.0) Phosphoglycerate kinase, cytosolic (EC 2.7.2.3) - Nicotiana tabacum (Common tobacco) & (reliability: 266.0) & (original description: no original description) 0.8003093501407167 58 PSME_00011674-RA (at2g25870 : 257.0) haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink). & (reliability: 514.0) & (original description: no original description) 0.7985392842546639 84 PSME_00020164-RA (at1g22870 : 423.0) Protein kinase family protein with ARM repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-like helical (InterPro:IPR011989), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-type fold (InterPro:IPR016024), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G71410.1); Has 26365 Blast hits to 24990 proteins in 1293 species: Archae - 12; Bacteria - 3236; Metazoa - 8918; Fungi - 4021; Plants - 3829; Viruses - 24; Other Eukaryotes - 6325 (source: NCBI BLink). & (reliability: 846.0) & (original description: no original description) 0.7970812475447845 64 PSME_00011728-RA (at1g05940 : 389.0) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.; cationic amino acid transporter 9 (CAT9); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 4 (TAIR:AT3G03720.1); Has 34191 Blast hits to 33870 proteins in 2358 species: Archae - 527; Bacteria - 27519; Metazoa - 1917; Fungi - 2586; Plants - 410; Viruses - 0; Other Eukaryotes - 1232 (source: NCBI BLink). & (reliability: 778.0) & (original description: no original description) 0.7947257549142952 69 PSME_00031059-RA (at5g49830 : 682.0) Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.; exocyst complex component 84B (EXO84B); LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: Vps51/Vps67 family (components of vesicular transport) protein (TAIR:AT1G10385.1); Has 307 Blast hits to 283 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 55; Plants - 127; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink). & (reliability: 1364.0) & (original description: no original description) 0.7946114542310178 86 PSME_00019529-RA (p29620|kc47_orysa : 478.0) CDC2+/CDC28-related protein kinase R2 (EC 2.7.11.22) - Oryza sativa (Rice) & (at1g18040 : 474.0) cyclin-dependent kinase D1;3 (CDKD1;3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;1 (TAIR:AT1G73690.1); Has 119527 Blast hits to 118054 proteins in 4087 species: Archae - 74; Bacteria - 13556; Metazoa - 44153; Fungi - 12365; Plants - 29368; Viruses - 395; Other Eukaryotes - 19616 (source: NCBI BLink). & (reliability: 948.0) & (original description: no original description) 0.7943957418376811 72 PSME_00017897-RA (at1g06770 : 182.0) Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.; DREB2A-interacting protein 1 (DRIP1); BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description) 0.7893647575946466 84 PSME_00001084-RA (at4g35230 : 491.0) Encodes BR-signaling kinase 1 (BSK1), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.; BR-signaling kinase 1 (BSK1); FUNCTIONS IN: binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway, N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase protein with tetratricopeptide repeat domain (TAIR:AT5G59010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o24585|cri4_maize : 127.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 884.0) & (original description: no original description) 0.7889607857651675 85 PSME_00000763-RA (at5g19000 : 263.0) BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), BTB/POZ (InterPro:IPR013069), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1). & (reliability: 526.0) & (original description: no original description) 0.7882727878597282 86 PSME_00023511-RA (at2g39650 : 205.0) Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT2G38820.2); Has 395 Blast hits to 393 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 410.0) & (original description: no original description) 0.787236634071528 88 PSME_00010992-RA no hits & (original description: no original description) 0.7851959485171296 92 PSME_00033718-RA (at1g73360 : 595.0) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. It is involved in trichome branching.; homeodomain GLABROUS 11 (HDG11); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 12 (TAIR:AT1G17920.1); Has 12070 Blast hits to 11936 proteins in 534 species: Archae - 0; Bacteria - 0; Metazoa - 9179; Fungi - 319; Plants - 2364; Viruses - 8; Other Eukaryotes - 200 (source: NCBI BLink). & (reliability: 1190.0) & (original description: no original description) 0.7851634598184835 93 PSME_00019103-RA (at3g06190 : 352.0) BTB-POZ and MATH domain 2 (BPM2); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 704.0) & (original description: no original description) 0.7846791007612967 97