Sequence Description Alias PCC hrr PSME_00026613-RA (p10330|nu5m_oenbe : 603.0) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH dehydrogenase subunit 5) - Oenothera bertiana (Bertero's evening primrose) & (atmg00665 : 588.0) Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from three different pre-cursors, NAD5a, NAD5b and NAD5c.; NADH dehydrogenase 5B (NAD5B); CONTAINS InterPro DOMAIN/s: NADH-plastoquinone oxidoreductase, chain 5 (InterPro:IPR003945), NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal (InterPro:IPR001516), NADH:ubiquinone/plastoquinone oxidoreductase (InterPro:IPR001750); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase 5A (TAIR:ATMG00513.1). & (reliability: 1176.0) & (original description: no original description) 0.8680274209706021 4 PSME_00033728-RA (atmg01360 : 448.0) cytochrome c oxidase subunit 1; cytochrome oxidase (COX1); CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit I bacterial type (InterPro:IPR014241), Cytochrome c oxidase, subunit I (InterPro:IPR000883). & (p60621|cox1_rapsa : 448.0) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) - Raphanus sativus (Radish) & (reliability: 896.0) & (original description: no original description) 0.8445433053014585 5 PSME_00003195-RA (p41643|psbc_pinth : 452.0) Photosystem II 44 kDa reaction center protein (P6 protein) (CP43) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00280 : 443.0) chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element.; photosystem II reaction center protein C (PSBC); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II protein PsbC (InterPro:IPR005869); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein B (TAIR:ATCG00680.1). & (reliability: 886.0) & (original description: no original description) 0.8366356008045316 10 PSME_00001174-RA (p41643|psbc_pinth : 422.0) Photosystem II 44 kDa reaction center protein (P6 protein) (CP43) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00280 : 414.0) chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element.; photosystem II reaction center protein C (PSBC); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II protein PsbC (InterPro:IPR005869); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein B (TAIR:ATCG00680.1). & (reliability: 828.0) & (original description: no original description) 0.8314904096857179 16 PSME_00002669-RA (original description: no original description) 0.8249341693308258 8 PSME_00023811-RA (p41643|psbc_pinth : 379.0) Photosystem II 44 kDa reaction center protein (P6 protein) (CP43) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00280 : 368.0) chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element.; photosystem II reaction center protein C (PSBC); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II protein PsbC (InterPro:IPR005869); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein B (TAIR:ATCG00680.1). & (reliability: 736.0) & (original description: no original description) 0.789420351065228 19 PSME_00028450-RA (atmg01360 : 142.0) cytochrome c oxidase subunit 1; cytochrome oxidase (COX1); CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit I bacterial type (InterPro:IPR014241), Cytochrome c oxidase, subunit I (InterPro:IPR000883). & (p60621|cox1_rapsa : 142.0) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) - Raphanus sativus (Radish) & (reliability: 284.0) & (original description: no original description) 0.7821513839917831 15 PSME_00023812-RA (p58386|psab_wheat : 347.0) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B) - Triticum aestivum (Wheat) & (atcg00340 : 346.0) Encodes the D1 subunit of photosystem I and II reaction centers.; PSAB; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis, light harvesting in photosystem I; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I psaB (InterPro:IPR006244), Photosystem I, PsaA/PsaB (InterPro:IPR001280), Photosystem I psaA/psaB, conserved site (InterPro:IPR020586); BEST Arabidopsis thaliana protein match is: Photosystem I, PsaA/PsaB protein (TAIR:ATCG00350.1). & (reliability: 692.0) & (original description: no original description) 0.7586454412131324 22 PSME_00026458-RA (p27754|rt03_oenbe : 125.0) Mitochondrial ribosomal protein S3 - Oenothera bertiana (Bertero's evening primrose) & (atmg00980 : 103.0) ribosomal protein L2; RPSL2; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrial large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S12, bacterial-type (InterPro:IPR005679); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT2G07675.1). & (reliability: 206.0) & (original description: no original description) 0.7523164219717593 13 PSME_00012989-RA (p06007|psbd_chlre : 161.0) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII D2 protein) - Chlamydomonas reinhardtii & (atcg00270 : 160.0) PSII D2 protein; photosystem II reaction center protein D (PSBD); FUNCTIONS IN: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport in photosystem II, photosynthesis, light harvesting in photosystem II; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosynthetic reaction centre, L/M (InterPro:IPR000484), Photosystem II reaction centre protein PsbD/D2 (InterPro:IPR005868); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein A (TAIR:ATCG00020.1). & (reliability: 320.0) & (original description: no original description) 0.74526904872828 15 PSME_00037030-RA (p04165|cyb_maize : 137.0) Cytochrome b - Zea mays (Maize) & (atmg00220 : 132.0) Mitochondrial apocytochrome b (cob) gene encodes a subunit of the ubiquinol-cytochrome c oxidoreductase and is part of a 5 kb transcript. The transcript also contains a pseudogene for ribosomal protein S14 called RPS15 and a tRNA(Ser) gene. Both the Cob and RPS15 genes are edited in the transcript.; apocytochrome b (COB); FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: aerobic respiration; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cytochrome b/b6 (InterPro:IPR016175), Cytochrome b/b6, C-terminal (InterPro:IPR005798), Di-haem cytochrome, transmembrane (InterPro:IPR016174), Cytochrome b/b6, N-terminal (InterPro:IPR005797); BEST Arabidopsis thaliana protein match is: Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal (TAIR:AT2G07727.1). & (reliability: 264.0) & (original description: no original description) 0.7437906976954664 11 PSME_00018386-RA (q02500|nu6m_wheat : 147.0) NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) (NADH dehydrogenase subunit 6) - Triticum aestivum (Wheat) & (atmg00270 : 145.0) NADH dehydrogenase subunit 6; NADH dehydrogenase 6 (NAD6); CONTAINS InterPro DOMAIN/s: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 (InterPro:IPR001457); BEST Arabidopsis thaliana protein match is: Cytochrome b/b6 protein (TAIR:ATMG00590.1). & (reliability: 290.0) & (original description: no original description) 0.7397663938764811 12 PSME_00021857-RA (p69551|psba_pinth : 509.0) Photosystem Q(B) protein (32 kDa thylakoid membrane protein) (Photosystem II protein D1) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00020 : 470.0) Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center core; photosystem II reaction center protein A (PSBA); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II reaction centre protein PsbA/D1 (InterPro:IPR005867), Photosynthetic reaction centre, L/M (InterPro:IPR000484); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein D (TAIR:ATCG00270.1). & (reliability: 940.0) & (original description: no original description) 0.7278532349357438 25 PSME_00051934-RA (p27062|nu3m_pangi : 143.0) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH dehydrogenase subunit 3) - Panax ginseng (Korean ginseng) & (atmg00990 : 137.0) NADH dehydrogenase subunit 3; NADH dehydrogenase 3 (NAD3); CONTAINS InterPro DOMAIN/s: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 (InterPro:IPR000440); BEST Arabidopsis thaliana protein match is: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein (TAIR:AT2G07751.1). & (reliability: 274.0) & (original description: no original description) 0.7229273248044715 72 PSME_00054853-RA (atmg00210 : 151.0) encodes a mitochondrial ribosomal protein L5, a constituent of the large subunit of the ribosomal complex; ribosomal protein L5 (RPL5); CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, N-terminal (InterPro:IPR020927); BEST Arabidopsis thaliana protein match is: Ribosomal L5P family protein (TAIR:AT2G07725.1). & (p26860|rm05_marpo : 132.0) Mitochondrial 60S ribosomal protein L5 - Marchantia polymorpha (Liverwort) & (reliability: 302.0) & (original description: no original description) 0.7190374780196904 15 PSME_00007864-RA (p41643|psbc_pinth : 110.0) Photosystem II 44 kDa reaction center protein (P6 protein) (CP43) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00280 : 103.0) chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element.; photosystem II reaction center protein C (PSBC); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II protein PsbC (InterPro:IPR005869); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein B (TAIR:ATCG00680.1). & (reliability: 206.0) & (original description: no original description) 0.7175716887671371 21 PSME_00000502-RA (q36814|psbd_wheat : 260.0) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII D2 protein) - Triticum aestivum (Wheat) & (atcg00270 : 259.0) PSII D2 protein; photosystem II reaction center protein D (PSBD); FUNCTIONS IN: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport in photosystem II, photosynthesis, light harvesting in photosystem II; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosynthetic reaction centre, L/M (InterPro:IPR000484), Photosystem II reaction centre protein PsbD/D2 (InterPro:IPR005868); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein A (TAIR:ATCG00020.1). & (reliability: 518.0) & (original description: no original description) 0.6999856215931027 29 PSME_00017597-RA (at1g31970 : 366.0) STRESS RESPONSE SUPPRESSOR 1 (STRS1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G63120.2); Has 53114 Blast hits to 49629 proteins in 3238 species: Archae - 911; Bacteria - 25415; Metazoa - 8113; Fungi - 5284; Plants - 3075; Viruses - 103; Other Eukaryotes - 10213 (source: NCBI BLink). & (p46942|db10_nicsy : 189.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 732.0) & (original description: no original description) 0.691245387939623 98 PSME_00007865-RA (p41640|psab_pinth : 787.0) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00340 : 764.0) Encodes the D1 subunit of photosystem I and II reaction centers.; PSAB; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis, light harvesting in photosystem I; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I psaB (InterPro:IPR006244), Photosystem I, PsaA/PsaB (InterPro:IPR001280), Photosystem I psaA/psaB, conserved site (InterPro:IPR020586); BEST Arabidopsis thaliana protein match is: Photosystem I, PsaA/PsaB protein (TAIR:ATCG00350.1). & (reliability: 1528.0) & (original description: no original description) 0.6876346830481238 31 PSME_00033727-RA (atmg01360 : 152.0) cytochrome c oxidase subunit 1; cytochrome oxidase (COX1); CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit I bacterial type (InterPro:IPR014241), Cytochrome c oxidase, subunit I (InterPro:IPR000883). & (p05502|cox1_sorbi : 152.0) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) - Sorghum bicolor (Sorghum) (Sorghum vulgare) & (reliability: 304.0) & (original description: no original description) 0.6771079580492502 21 PSME_00012991-RA (p06404|psbd_marpo : 116.0) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII D2 protein) - Marchantia polymorpha (Liverwort) & (atcg00270 : 115.0) PSII D2 protein; photosystem II reaction center protein D (PSBD); FUNCTIONS IN: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport in photosystem II, photosynthesis, light harvesting in photosystem II; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosynthetic reaction centre, L/M (InterPro:IPR000484), Photosystem II reaction centre protein PsbD/D2 (InterPro:IPR005868); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein A (TAIR:ATCG00020.1). & (reliability: 230.0) & (original description: no original description) 0.67632058128969 27 PSME_00018769-RA (p56648|rbl_vitvi : 182.0) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) - Vitis vinifera (Grape) & (atcg00490 : 178.0) large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.; RBCL; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: response to cadmium ion, carbon fixation, peptidyl-cysteine S-nitrosylation, response to abscisic acid stimulus; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, large subunit, C-terminal (InterPro:IPR000685), Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal (InterPro:IPR017443), Ribulose bisphosphate carboxylase, large subunit, N-terminal (InterPro:IPR017444), Ribulose bisphosphate carboxylase, large chain, active site (InterPro:IPR020878); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase large chain, catalytic domain (TAIR:AT2G07732.1). & (reliability: 356.0) & (original description: no original description) 0.6729084417066199 29 PSME_00053850-RA (p10803|psbd_secce : 587.0) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII D2 protein) - Secale cereale (Rye) & (atcg00270 : 585.0) PSII D2 protein; photosystem II reaction center protein D (PSBD); FUNCTIONS IN: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport in photosystem II, photosynthesis, light harvesting in photosystem II; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosynthetic reaction centre, L/M (InterPro:IPR000484), Photosystem II reaction centre protein PsbD/D2 (InterPro:IPR005868); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein A (TAIR:ATCG00020.1). & (reliability: 1170.0) & (original description: no original description) 0.6492513141911829 37 PSME_00029561-RA (p41604|atpi_pinth : 243.0) Chloroplast ATP synthase a chain precursor (EC 3.6.3.14) (ATPase subunit IV) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00150 : 217.0) Encodes a subunit of ATPase complex CF0, which is a proton channel that supplies the proton motive force to drive ATP synthesis by CF1 portion of the complex.; ATPI; FUNCTIONS IN: hydrogen ion channel activity; INVOLVED IN: dATP biosynthetic process from ADP; LOCATED IN: chloroplast thylakoid membrane, chloroplast ATP synthase complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit A (InterPro:IPR000568). & (reliability: 434.0) & (original description: no original description) 0.6211946234431636 91 PSME_00034558-RA (p41624|psbb_pinth : 132.0) Photosystem II P680 chlorophyll A apoprotein (CP-47 protein) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00680 : 124.0) encodes for CP47, subunit of the photosystem II reaction center.; photosystem II reaction center protein B (PSBB); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction, photosystem II assembly; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II, PsbB (InterPro:IPR017486); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein C (TAIR:ATCG00280.1). & (reliability: 248.0) & (original description: no original description) 0.6195906397072947 92