Sequence Description Alias PCC hrr PSME_00026296-RA (at5g05170 : 1544.0) Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening.; CONSTITUTIVE EXPRESSION OF VSP 1 (CEV1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: primary cell wall biogenesis, cellulose biosynthetic process, defense response; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: cellulose synthase 1 (TAIR:AT4G32410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 3088.0) & (original description: no original description) 0.9079781662606066 2 PSME_00037419-RA (at2g25800 : 716.0) CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT2G20010.2); Has 317 Blast hits to 232 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 29; Fungi - 20; Plants - 175; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). & (reliability: 1432.0) & (original description: no original description) 0.9010381244637009 19 PSME_00044892-RA (at3g55200 : 1672.0) Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: WD40 repeat (InterPro:IPR001680), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (TAIR:AT3G55220.1); Has 1074 Blast hits to 953 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 406; Fungi - 248; Plants - 228; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink). & (reliability: 3344.0) & (original description: no original description) 0.8969738415276508 24 PSME_00003677-RA (at4g24840 : 211.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 422.0) & (original description: no original description) 0.889791199207201 4 PSME_00016394-RA (at3g26560 : 1512.0) ATP-dependent RNA helicase, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Domain of unknown function DUF1605 (InterPro:IPR011709), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.2); Has 53052 Blast hits to 35825 proteins in 3176 species: Archae - 195; Bacteria - 13845; Metazoa - 17201; Fungi - 5520; Plants - 3365; Viruses - 1203; Other Eukaryotes - 11723 (source: NCBI BLink). & (reliability: 3024.0) & (original description: no original description) 0.8893930937545544 71 PSME_00041931-RA no hits & (original description: no original description) 0.8828470198342806 47 PSME_00006978-RA (at2g44710 : 377.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.2); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink). & (reliability: 754.0) & (original description: no original description) 0.8809837334109258 28 PSME_00004297-RA (at4g32410 : 1617.0) Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening.; cellulose synthase 1 (CESA1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: primary cell wall biogenesis, cellulose biosynthetic process, plant-type cell wall biogenesis, hyperosmotic salinity response; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: cellulose synthase 10 (TAIR:AT2G25540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 3234.0) & (original description: no original description) 0.880517607243336 47 PSME_00056654-RA (at1g62870 : 810.0) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). & (reliability: 1620.0) & (original description: no original description) 0.8801727187216092 11 PSME_00006076-RA (at1g59760 : 1096.0) RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink). & (reliability: 2192.0) & (original description: no original description) 0.8776842909187852 13 PSME_00007734-RA (at5g55230 : 486.0) Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to the spindle appears to be regulated by a phosphorylation sensitive switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution.; microtubule-associated proteins 65-1 (MAP65-1); FUNCTIONS IN: microtubule binding; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: microtubule-associated protein 65-2 (TAIR:AT4G26760.1). & (reliability: 972.0) & (original description: no original description) 0.8758820771885976 24 PSME_00002451-RA (at3g07660 : 428.0) Kinase-related protein of unknown function (DUF1296); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: Kinase-related protein of unknown function (DUF1296) (TAIR:AT3G13990.1); Has 3086 Blast hits to 1914 proteins in 327 species: Archae - 2; Bacteria - 372; Metazoa - 1089; Fungi - 466; Plants - 245; Viruses - 13; Other Eukaryotes - 899 (source: NCBI BLink). & (reliability: 856.0) & (original description: no original description) 0.8753975138628168 59 PSME_00010212-RA (at1g22930 : 736.0) T-complex protein 11; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT4G09150.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1472.0) & (original description: no original description) 0.8739466820526514 34 PSME_00030932-RA (at5g59010 : 509.0) Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Tetratricopeptide-like helical (InterPro:IPR011990), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase protein with tetratricopeptide repeat domain (TAIR:AT3G54030.1); Has 21140 Blast hits to 20932 proteins in 637 species: Archae - 6; Bacteria - 562; Metazoa - 1681; Fungi - 205; Plants - 18085; Viruses - 31; Other Eukaryotes - 570 (source: NCBI BLink). & (o24585|cri4_maize : 110.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 948.0) & (original description: no original description) 0.8695365019802278 14 PSME_00029026-RA (at2g39940 : 308.0) Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.; CORONATINE INSENSITIVE 1 (COI1); BEST Arabidopsis thaliana protein match is: GRR1-like protein 1 (TAIR:AT4G03190.1); Has 1742 Blast hits to 1380 proteins in 128 species: Archae - 0; Bacteria - 2; Metazoa - 463; Fungi - 47; Plants - 1165; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 616.0) & (original description: no original description) 0.8689904255841205 15 PSME_00016742-RA (p27598|phsl_ipoba : 540.0) Alpha-1,4 glucan phosphorylase L isozyme, chloroplast precursor (EC 2.4.1.1) (Starch phosphorylase L) - Ipomoea batatas (Sweet potato) (Batate) & (at3g29320 : 535.0) Encodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose.; Glycosyl transferase, family 35; FUNCTIONS IN: phosphorylase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to water deprivation, response to temperature stimulus; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch/alpha-glucan phosphorylase (InterPro:IPR011833), Glycosyl transferase, family 35 (InterPro:IPR000811); BEST Arabidopsis thaliana protein match is: alpha-glucan phosphorylase 2 (TAIR:AT3G46970.1); Has 6408 Blast hits to 5779 proteins in 1768 species: Archae - 99; Bacteria - 4542; Metazoa - 558; Fungi - 166; Plants - 202; Viruses - 2; Other Eukaryotes - 839 (source: NCBI BLink). & (reliability: 1070.0) & (original description: no original description) 0.8669134201584616 47 PSME_00008483-RA (at4g15130 : 129.0) phosphorylcholine cytidylyltransferase2 (CCT2); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidyltransferase-related (InterPro:IPR004821), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: phosphorylcholine cytidylyltransferase (TAIR:AT2G32260.1); Has 2568 Blast hits to 2194 proteins in 660 species: Archae - 25; Bacteria - 876; Metazoa - 531; Fungi - 328; Plants - 264; Viruses - 0; Other Eukaryotes - 544 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description) 0.8653580149427332 18 PSME_00037711-RA (at3g09670 : 154.0) Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G02950.1); Has 880 Blast hits to 796 proteins in 129 species: Archae - 0; Bacteria - 16; Metazoa - 486; Fungi - 43; Plants - 152; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description) 0.8643020392067327 65 PSME_00028676-RA (at2g46700 : 549.0) CDPK-related kinase 3 (CRK3); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase (CDPK) family protein (TAIR:AT5G24430.1); Has 97610 Blast hits to 96449 proteins in 2853 species: Archae - 105; Bacteria - 12972; Metazoa - 36079; Fungi - 11803; Plants - 17625; Viruses - 411; Other Eukaryotes - 18615 (source: NCBI BLink). & (p53681|crk_dauca : 521.0) CDPK-related protein kinase (EC 2.7.11.1) (PK421) - Daucus carota (Carrot) & (reliability: 1040.0) & (original description: no original description) 0.8622328389158915 45 PSME_00033571-RA (at1g70580 : 368.0) Encodes a protein with glyoxylate aminotransferase activity. It can act on a number of different small substrates and amino acids in vitro.; alanine-2-oxoglutarate aminotransferase 2 (AOAT2); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: glutamate:glyoxylate aminotransferase (TAIR:AT1G23310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p52894|ala2_horvu : 249.0) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) - Hordeum vulgare (Barley) & (reliability: 736.0) & (original description: no original description) 0.861438010799208 22 PSME_00026556-RA (at3g04740 : 1277.0) encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors.; STRUWWELPETER (SWP); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: positive regulation of transcription, positive regulation of cell proliferation; LOCATED IN: mediator complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med14 (InterPro:IPR013947); Has 940 Blast hits to 375 proteins in 163 species: Archae - 0; Bacteria - 61; Metazoa - 117; Fungi - 104; Plants - 74; Viruses - 0; Other Eukaryotes - 584 (source: NCBI BLink). & (reliability: 2554.0) & (original description: no original description) 0.8604555031161566 23 PSME_00026293-RA (at1g17070 : 821.0) GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT2G42330.2); Has 1264 Blast hits to 1232 proteins in 250 species: Archae - 2; Bacteria - 6; Metazoa - 735; Fungi - 146; Plants - 190; Viruses - 1; Other Eukaryotes - 184 (source: NCBI BLink). & (reliability: 1642.0) & (original description: no original description) 0.8600689636545538 60 PSME_00008383-RA (at3g48430 : 465.0) Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.; relative of early flowering 6 (REF6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C2H2-like (InterPro:IPR015880), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, C2H2-type (InterPro:IPR007087), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (TAIR:AT5G04240.1); Has 105567 Blast hits to 35250 proteins in 1010 species: Archae - 0; Bacteria - 23; Metazoa - 99094; Fungi - 2247; Plants - 673; Viruses - 7; Other Eukaryotes - 3523 (source: NCBI BLink). & (reliability: 930.0) & (original description: no original description) 0.8591375534279703 57 PSME_00010969-RA no hits & (original description: no original description) 0.8589093146865887 87 PSME_00018575-RA (at5g46190 : 345.0) RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G18375.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 690.0) & (original description: no original description) 0.8580877233589216 59 PSME_00006155-RA (at4g36760 : 738.0) Arabidopsis aminopeptidase P1; aminopeptidase P1 (APP1); FUNCTIONS IN: aminopeptidase activity, N-1-naphthylphthalamic acid binding; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site (InterPro:IPR001131), Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT3G05350.1); Has 10398 Blast hits to 10335 proteins in 2401 species: Archae - 277; Bacteria - 6310; Metazoa - 362; Fungi - 246; Plants - 146; Viruses - 0; Other Eukaryotes - 3057 (source: NCBI BLink). & (reliability: 1476.0) & (original description: no original description) 0.8575089304842677 72 PSME_00055986-RA (at4g11450 : 163.0) Protein of unknown function (DUF3527); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT1G63520.1); Has 132 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description) 0.8570455162618279 41 PSME_00026495-RA (at1g06840 : 651.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G01950.1); Has 194453 Blast hits to 138780 proteins in 4845 species: Archae - 155; Bacteria - 17954; Metazoa - 60073; Fungi - 10970; Plants - 82493; Viruses - 385; Other Eukaryotes - 22423 (source: NCBI BLink). & (o24585|cri4_maize : 243.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 1302.0) & (original description: no original description) 0.8557709672576717 31 PSME_00008174-RA (at2g26780 : 755.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 448 Blast hits to 380 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 190; Plants - 63; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 1510.0) & (original description: no original description) 0.8542173640373174 83 PSME_00007849-RA (at1g23780 : 105.0) F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23770.1); Has 310 Blast hits to 310 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description) 0.852833775588932 43 PSME_00002623-RA (at1g18890 : 771.0) encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro.; calcium-dependent protein kinase 1 (CDPK1); FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity; INVOLVED IN: response to water deprivation, response to salt stress, protein amino acid phosphorylation, N-terminal protein myristoylation, abscisic acid mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 30 (TAIR:AT1G74740.1); Has 125370 Blast hits to 119826 proteins in 3847 species: Archae - 176; Bacteria - 14154; Metazoa - 46310; Fungi - 16874; Plants - 24900; Viruses - 438; Other Eukaryotes - 22518 (source: NCBI BLink). & (p53683|cdpk2_orysa : 541.0) Calcium-dependent protein kinase, isoform 2 (EC 2.7.11.1) (CDPK 2) - Oryza sativa (Rice) & (reliability: 1542.0) & (original description: no original description) 0.8520440968379545 37 PSME_00000360-RA (at3g01100 : 163.0) unknown protein, has cDNAs and ESTs associated to it; hypothetical protein 1 (HYP1); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G69450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description) 0.8512855245665689 90 PSME_00016119-RA (at5g18480 : 227.0) plant glycogenin-like starch initiation protein 6 (PGSIP6); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process, biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 5 (TAIR:AT1G08990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 454.0) & (original description: no original description) 0.8503795720618835 54 PSME_00000597-RA (at5g20990 : 278.0) Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.; B73; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, conserved site (InterPro:IPR008284), Molybdenum cofactor synthesis (InterPro:IPR020817), MoeA, N-terminal and linker domain (InterPro:IPR005110), MoeA, C-terminal, domain IV (InterPro:IPR005111), Molybdopterin binding (InterPro:IPR001453); Has 13106 Blast hits to 12710 proteins in 1951 species: Archae - 648; Bacteria - 8919; Metazoa - 385; Fungi - 192; Plants - 74; Viruses - 0; Other Eukaryotes - 2888 (source: NCBI BLink). & (reliability: 556.0) & (original description: no original description) 0.8501246742065609 44 PSME_00019136-RA (at2g45910 : 290.0) U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT3G49060.1); Has 126911 Blast hits to 124541 proteins in 4743 species: Archae - 223; Bacteria - 14733; Metazoa - 47002; Fungi - 10910; Plants - 34737; Viruses - 429; Other Eukaryotes - 18877 (source: NCBI BLink). & (o24585|cri4_maize : 131.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 540.0) & (original description: no original description) 0.8493358781605265 41 PSME_00013536-RA (at5g26850 : 576.0) Uncharacterized protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1). & (reliability: 1152.0) & (original description: no original description) 0.8493005612572015 42 PSME_00035382-RA (at2g26140 : 879.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 4 (ftsh4); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 11 (TAIR:AT5G53170.1); Has 39775 Blast hits to 37259 proteins in 3240 species: Archae - 1584; Bacteria - 15744; Metazoa - 5149; Fungi - 3764; Plants - 3335; Viruses - 40; Other Eukaryotes - 10159 (source: NCBI BLink). & (q5z974|ftsh_orysa : 347.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1758.0) & (original description: no original description) 0.8478862397689786 97 PSME_00046822-RA (at1g47670 : 722.0) Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: LYS/HIS transporter 7 (TAIR:AT4G35180.1); Has 1570 Blast hits to 1567 proteins in 175 species: Archae - 0; Bacteria - 20; Metazoa - 174; Fungi - 154; Plants - 1118; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). & (reliability: 1444.0) & (original description: no original description) 0.8472949085379495 45 PSME_00018133-RA (at3g09560 : 357.0) Lipin family protein; FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphohydrolase 2 (TAIR:AT5G42870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 680.0) & (original description: no original description) 0.846593193889891 97 PSME_00043523-RA (at5g61910 : 82.4) DCD (Development and Cell Death) domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Copine (InterPro:IPR010734), C2 membrane targeting protein (InterPro:IPR018029), Kelch related (InterPro:IPR013089), C2 calcium-dependent membrane targeting (InterPro:IPR000008), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Calcium-dependent phospholipid-binding Copine family protein (TAIR:AT5G61900.3). & (reliability: 164.8) & (original description: no original description) 0.8446843383711526 74 PSME_00035770-RA (at3g15970 : 275.0) NUP50 (Nucleoporin 50 kDa) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993), Nuclear pore complex, NUP2/50/61 (InterPro:IPR015007); BEST Arabidopsis thaliana protein match is: NUP50 (Nucleoporin 50 kDa) protein (TAIR:AT1G52380.1); Has 4078 Blast hits to 2719 proteins in 441 species: Archae - 18; Bacteria - 1103; Metazoa - 1379; Fungi - 710; Plants - 228; Viruses - 8; Other Eukaryotes - 632 (source: NCBI BLink). & (reliability: 550.0) & (original description: no original description) 0.8429663855346131 55 PSME_00007228-RA (at2g29200 : 852.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink). & (reliability: 1704.0) & (original description: no original description) 0.8427174792041573 53 PSME_00012714-RA (at3g57660 : 509.0) Encodes a subunit of RNA polymerase I (aka RNA polymerase A).; nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink). & (p56300|rpoc1_chlvu : 92.8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) - Chlorella vulgaris (Green alga) & (reliability: 1018.0) & (original description: no original description) 0.8425774004626788 54 PSME_00056955-RA (at1g62870 : 811.0) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). & (reliability: 1622.0) & (original description: no original description) 0.8421156828846911 55 PSME_00013250-RA (at2g44710 : 263.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.2); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink). & (reliability: 526.0) & (original description: no original description) 0.8420842802271482 56 PSME_00000075-RA (at5g66150 : 247.0) Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 494.0) & (original description: no original description) 0.8408822520060778 57 PSME_00013711-RA (at3g11240 : 434.0) Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.; arginine-tRNA protein transferase 2 (ATE2); FUNCTIONS IN: arginyltransferase activity; INVOLVED IN: regulation of seed germination, regulation of lipid catabolic process, protein arginylation, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Arginine-tRNA-protein transferase, N-terminal (InterPro:IPR007471), Arginine-tRNA-protein transferase 1, eukaryotic (InterPro:IPR017137), Arginine-tRNA-protein transferase, C-terminal (InterPro:IPR007472); BEST Arabidopsis thaliana protein match is: arginine-tRNA protein transferase 1 (TAIR:AT5G05700.1); Has 2270 Blast hits to 2031 proteins in 783 species: Archae - 0; Bacteria - 1438; Metazoa - 213; Fungi - 241; Plants - 48; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink). & (reliability: 868.0) & (original description: no original description) 0.8396736353082379 58 PSME_00023730-RA (at2g18730 : 249.0) diacylglycerol kinase 3 (DGK3); FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206), Diacylglycerol kinase, accessory domain (InterPro:IPR000756), Diacylglycerol kinase, plant (InterPro:IPR016961); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase 7 (TAIR:AT4G30340.1); Has 1626 Blast hits to 1441 proteins in 243 species: Archae - 0; Bacteria - 214; Metazoa - 985; Fungi - 0; Plants - 266; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). & (reliability: 498.0) & (original description: no original description) 0.8395612361161511 60 PSME_00022495-RA (at3g07810 : 261.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G47620.2); Has 54120 Blast hits to 30425 proteins in 1467 species: Archae - 38; Bacteria - 13586; Metazoa - 19029; Fungi - 4969; Plants - 7799; Viruses - 151; Other Eukaryotes - 8548 (source: NCBI BLink). & (reliability: 522.0) & (original description: no original description) 0.8394749038494017 61 PSME_00015327-RA (at1g52360 : 276.0) Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3). & (reliability: 552.0) & (original description: no original description) 0.8394249267445931 62 PSME_00002508-RA (at3g45780 : 433.0) Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.; phototropin 1 (PHOT1); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 8 processes; LOCATED IN: internal side of plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: phototropin 2 (TAIR:AT5G58140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q67ux0|ado2_orysa : 93.2) Putative adagio-like protein 2 - Oryza sativa (Rice) & (reliability: 866.0) & (original description: no original description) 0.8392957202495729 86 PSME_00007985-RA (at3g10770 : 194.0) Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT5G05100.1); Has 381 Blast hits to 381 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 60; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (reliability: 388.0) & (original description: no original description) 0.8384623049932528 67 PSME_00006321-RA (at1g77030 : 712.0) hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DBP10CT (InterPro:IPR012541), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 42888 Blast hits to 42073 proteins in 3063 species: Archae - 831; Bacteria - 21864; Metazoa - 5973; Fungi - 4375; Plants - 2654; Viruses - 31; Other Eukaryotes - 7160 (source: NCBI BLink). & (p46942|db10_nicsy : 204.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 1424.0) & (original description: no original description) 0.8384443918500069 68 PSME_00001599-RA (at1g11290 : 625.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 160.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1154.0) & (original description: no original description) 0.8383669302914769 69 PSME_00004717-RA (at1g14610 : 273.0) Required for proper proliferation of basal cells.; TWIN 2 (TWN2); FUNCTIONS IN: valine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (TAIR:AT5G16715.1); Has 39194 Blast hits to 36732 proteins in 3122 species: Archae - 839; Bacteria - 19755; Metazoa - 1534; Fungi - 892; Plants - 369; Viruses - 3; Other Eukaryotes - 15802 (source: NCBI BLink). & (reliability: 546.0) & (original description: no original description) 0.8365439329563481 95 PSME_00009031-RA (at5g10470 : 421.0) Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA2. Demarcates the division site in plant cells.; kinesin like protein for actin based chloroplast movement 1 (KAC1); FUNCTIONS IN: microtubule binding, protein binding, microtubule motor activity; INVOLVED IN: preprophase band assembly, chloroplast avoidance movement, chloroplast accumulation movement, cytokinesis; LOCATED IN: cytosol, plasma membrane, membrane, cell plate, phragmoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin like protein for actin based chloroplast movement 2 (TAIR:AT5G65460.1); Has 13820 Blast hits to 12778 proteins in 615 species: Archae - 30; Bacteria - 578; Metazoa - 6060; Fungi - 1488; Plants - 1898; Viruses - 6; Other Eukaryotes - 3760 (source: NCBI BLink). & (p46869|fla10_chlre : 124.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 842.0) & (original description: no original description) 0.8354452366219652 73 PSME_00032391-RA (at5g12370 : 509.0) exocyst complex component sec10 (SEC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: exocytosis, vesicle docking; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec10 (InterPro:IPR009976); Has 533 Blast hits to 489 proteins in 174 species: Archae - 0; Bacteria - 6; Metazoa - 178; Fungi - 253; Plants - 59; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). & (q2qv94|exoc5_orysa : 484.0) Exocyst complex component 5 (Exocyst complex component Sec10) - Oryza sativa (Rice) & (reliability: 1018.0) & (original description: no original description) 0.8344470023543351 99 PSME_00052351-RA (at1g20780 : 174.0) Encodes a protein containing a U-box and an ARM domain.; senescence-associated E3 ubiquitin ligase 1 (SAUL1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of chlorophyll catabolic process, regulation of chlorophyll biosynthetic process, leaf senescence, regulation of abscisic acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G76390.2); Has 2790 Blast hits to 2660 proteins in 201 species: Archae - 0; Bacteria - 20; Metazoa - 434; Fungi - 161; Plants - 1969; Viruses - 3; Other Eukaryotes - 203 (source: NCBI BLink). & (q64ha9|spl11_orysa : 80.9) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 348.0) & (original description: no original description) 0.8323410677726147 76 PSME_00035819-RA (at2g17190 : 198.0) ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquilin (InterPro:IPR015496), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT2G17200.1); Has 11292 Blast hits to 6186 proteins in 743 species: Archae - 6; Bacteria - 243; Metazoa - 4778; Fungi - 1683; Plants - 2450; Viruses - 166; Other Eukaryotes - 1966 (source: NCBI BLink). & (reliability: 396.0) & (original description: no original description) 0.8322603290538227 98 PSME_00041217-RA (at2g29200 : 595.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink). & (reliability: 1190.0) & (original description: no original description) 0.8309850137979745 80 PSME_00004447-RA (at1g04860 : 279.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 2 (UBP2); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 1 (TAIR:AT2G32780.1); Has 10400 Blast hits to 6714 proteins in 274 species: Archae - 0; Bacteria - 50; Metazoa - 5279; Fungi - 1927; Plants - 1459; Viruses - 5; Other Eukaryotes - 1680 (source: NCBI BLink). & (reliability: 558.0) & (original description: no original description) 0.8307048645168604 81 PSME_00028566-RA (at1g12470 : 577.0) zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pep3/Vps18/deep orange (InterPro:IPR007810), Zinc finger, RING-type (InterPro:IPR001841); Has 495 Blast hits to 471 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 170; Fungi - 162; Plants - 42; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). & (reliability: 1154.0) & (original description: no original description) 0.8303894744550285 82 PSME_00010875-RA (at2g32600 : 330.0) hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, intracellular, spliceosomal complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 18078 Blast hits to 8181 proteins in 576 species: Archae - 26; Bacteria - 1885; Metazoa - 7255; Fungi - 1800; Plants - 3678; Viruses - 906; Other Eukaryotes - 2528 (source: NCBI BLink). & (reliability: 660.0) & (original description: no original description) 0.8297186401280283 84 PSME_00002640-RA (at4g13650 : 724.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 139.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1448.0) & (original description: no original description) 0.8296793250916881 85 PSME_00056175-RA (at2g16640 : 939.0) multimeric translocon complex in the outer envelope membrane 132 (TOC132); FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Toc86/159 (InterPro:IPR005690), AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: translocon outer complex protein 120 (TAIR:AT3G16620.1); Has 7054 Blast hits to 4909 proteins in 545 species: Archae - 31; Bacteria - 596; Metazoa - 2433; Fungi - 793; Plants - 579; Viruses - 84; Other Eukaryotes - 2538 (source: NCBI BLink). & (q41009|toc34_pea : 128.0) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa chloroplast outer envelope protein) (GTP-binding protein OEP34) (GTP-binding protein IAP34) - Pisum sativum (Garden pea) & (reliability: 1878.0) & (original description: no original description) 0.8294629892394075 86 PSME_00022823-RA (at5g04930 : 1015.0) Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.; aminophospholipid ATPase 1 (ALA1); FUNCTIONS IN: protein binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, phospholipid transport, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G13900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 2030.0) & (original description: no original description) 0.8293438460404197 87 PSME_00008271-RA (at2g16280 : 398.0) Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).; 3-ketoacyl-CoA synthase 9 (KCS9); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: response to cold, response to light stimulus, very long-chain fatty acid metabolic process, response to osmotic stress, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 4 (TAIR:AT1G19440.1); Has 4705 Blast hits to 4688 proteins in 1155 species: Archae - 0; Bacteria - 1679; Metazoa - 0; Fungi - 8; Plants - 2880; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). & (p28583|cdpk_soybn : 165.0) Calcium-dependent protein kinase SK5 (EC 2.7.11.1) (CDPK) - Glycine max (Soybean) & (reliability: 786.0) & (original description: no original description) 0.8288052350673247 88 PSME_00039918-RA (at5g05850 : 380.0) Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.; plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 760.0) & (original description: no original description) 0.8285635969326052 89 PSME_00017357-RA (at2g32700 : 546.0) Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.; LEUNIG_homolog (LUH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: flower development, negative regulation of transcription, embryo development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (TAIR:AT4G32551.1). & (reliability: 1092.0) & (original description: no original description) 0.8283458898623539 90 PSME_00001162-RA (at4g02280 : 1258.0) Encodes a protein with sucrose synthase activity (SUS3). It appears to be important for sucrose metabolism in developing seeds, especially during the late maturation phase, about 18 days after flowering.; sucrose synthase 3 (SUS3); CONTAINS InterPro DOMAIN/s: Sucrose synthase, plant/cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 2 (TAIR:AT5G49190.1); Has 6506 Blast hits to 6505 proteins in 1621 species: Archae - 256; Bacteria - 4351; Metazoa - 95; Fungi - 50; Plants - 824; Viruses - 0; Other Eukaryotes - 930 (source: NCBI BLink). & (o24301|sus2_pea : 1258.0) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2) - Pisum sativum (Garden pea) & (reliability: 2516.0) & (original description: no original description) 0.826392486584099 94 PSME_00017097-RA (at4g21670 : 688.0) encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl.; C-terminal domain phosphatase-like 1 (CPL1); FUNCTIONS IN: double-stranded RNA binding, phosphatase activity, nucleotide phosphatase activity; INVOLVED IN: abscisic acid mediated signaling pathway, negative regulation of transcription, response to abiotic stimulus; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: carboxyl-terminal domain (ctd) phosphatase-like 2 (TAIR:AT5G01270.2); Has 330 Blast hits to 317 proteins in 105 species: Archae - 0; Bacteria - 31; Metazoa - 57; Fungi - 81; Plants - 112; Viruses - 1; Other Eukaryotes - 48 (source: NCBI BLink). & (reliability: 1376.0) & (original description: no original description) 0.8262522337904395 95 PSME_00020558-RA (at5g55860 : 142.0) Plant protein of unknown function (DUF827); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT1G12150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description) 0.8262453644779072 96 PSME_00000590-RA (at5g03040 : 274.0) IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 1 (TAIR:AT3G09710.1). & (reliability: 548.0) & (original description: no original description) 0.825725803086628 97 PSME_00023822-RA (q7xqp4|sapk7_orysa : 332.0) Serine/threonine-protein kinase SAPK7 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 7) - Oryza sativa (Rice) & (at1g60940 : 323.0) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.; SNF1-related protein kinase 2.10 (SNRK2.10); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like, plant (InterPro:IPR015740); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10940.1); Has 111565 Blast hits to 109717 proteins in 3008 species: Archae - 112; Bacteria - 13169; Metazoa - 40737; Fungi - 12092; Plants - 25831; Viruses - 494; Other Eukaryotes - 19130 (source: NCBI BLink). & (reliability: 646.0) & (original description: no original description) 0.8255843245281745 98 PSME_00018978-RA (at4g13780 : 299.0) methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative; FUNCTIONS IN: methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, methionyl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G40660.1); Has 17985 Blast hits to 17920 proteins in 2983 species: Archae - 503; Bacteria - 10276; Metazoa - 591; Fungi - 596; Plants - 228; Viruses - 3; Other Eukaryotes - 5788 (source: NCBI BLink). & (q9zts1|sym_orysa : 296.0) Probable methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS) - Oryza sativa (Rice) & (reliability: 598.0) & (original description: no original description) 0.8255536428146284 99 PSME_00032117-RA (at1g63680 : 514.0) Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis. Localized to plastids. AtMurE is involved in chloroplast biogenesis.; MURE; FUNCTIONS IN: acid-amino acid ligase activity, ATP binding, ligase activity; INVOLVED IN: chloroplast fission, chloroplast organization, biosynthetic process; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (InterPro:IPR005761), Mur ligase, N-terminal (InterPro:IPR000713), Mur ligase, C-terminal (InterPro:IPR004101); Has 18234 Blast hits to 18170 proteins in 2587 species: Archae - 50; Bacteria - 13487; Metazoa - 59; Fungi - 43; Plants - 60; Viruses - 2; Other Eukaryotes - 4533 (source: NCBI BLink). & (reliability: 1028.0) & (original description: no original description) 0.8255337294307167 100