Sequence Description Alias PCC hrr PSME_00018267-RA (at5g10980 : 223.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q71h73|h33_vitvi : 223.0) Histone H3.3 - Vitis vinifera (Grape) & (reliability: 446.0) & (original description: no original description) 0.8244046831077426 15 PSME_00013229-RA (at5g05360 : 116.0) unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description) 0.802931471182483 20 PSME_00012170-RA (at4g26555 : 101.0) FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G19830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description) 0.7765047232342324 91 PSME_00056859-RA (at1g04640 : 314.0) Lipoyltransferase, located in mitochondria but not found in chloroplasts; lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 628.0) & (original description: no original description) 0.7518317709528173 27 PSME_00015869-RA no hits & (original description: no original description) 0.750754394388388 41 PSME_00034476-RA (at1g52740 : 204.0) Encodes HTA9, a histone H2A protein.; histone H2A protein 9 (HTA9); FUNCTIONS IN: DNA binding; INVOLVED IN: detection of temperature stimulus, defense response to bacterium, regulation of flower development; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 11 (TAIR:AT3G54560.1); Has 3910 Blast hits to 3905 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 2573; Fungi - 292; Plants - 612; Viruses - 4; Other Eukaryotes - 429 (source: NCBI BLink). & (q84mp7|h2av3_orysa : 201.0) Probable histone H2A variant 3 - Oryza sativa (Rice) & (reliability: 408.0) & (original description: no original description) 0.7492161122108772 91 PSME_00021321-RA (at1g07700 : 98.2) Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 196.4) & (original description: no original description) 0.7485770917327949 83 PSME_00021811-RA no hits & (original description: no original description) 0.7457665681935861 20 PSME_00042739-RA (at1g15880 : 254.0) Golgi SNARE 11 protein (GOS11); golgi snare 11 (GOS11); BEST Arabidopsis thaliana protein match is: golgi snare 12 (TAIR:AT2G45200.1); Has 412 Blast hits to 412 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 123; Plants - 99; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). & (reliability: 508.0) & (original description: no original description) 0.7399614324218456 88 PSME_00012287-RA (p40619|hmgl_iponi : 123.0) HMG1/2-like protein - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (at3g51880 : 122.0) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.; high mobility group B1 (HMGB1); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3). & (reliability: 244.0) & (original description: no original description) 0.7397428100449157 28 PSME_00004872-RA (at3g13200 : 168.0) EMBRYO DEFECTIVE 2769 (EMB2769); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cwf15/Cwc15 cell cycle control protein (InterPro:IPR006973); Has 4871 Blast hits to 3670 proteins in 321 species: Archae - 3; Bacteria - 193; Metazoa - 1657; Fungi - 645; Plants - 225; Viruses - 150; Other Eukaryotes - 1998 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description) 0.7382894850054208 38 PSME_00042204-RA (p16577|ubc4_wheat : 285.0) Ubiquitin-conjugating enzyme E2-23 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) - Triticum aestivum (Wheat) & (at5g41340 : 282.0) Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated.; ubiquitin conjugating enzyme 4 (UBC4); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 5 (TAIR:AT1G63800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 564.0) & (original description: no original description) 0.7311364094361487 38 PSME_00040931-RA (at4g14710 : 288.0) ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: oxidation reduction, L-methionine salvage from methylthioadenosine; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Acireductone dioxygenase, ARD (InterPro:IPR004313), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase 1 (TAIR:AT4G14716.1). & (q58fk4|ard2_orysa : 273.0) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 (EC 1.13.-.-) (Aci-reductone dioxygenase 2) (Submergence-induced protein 2A) - Oryza sativa (Rice) & (reliability: 576.0) & (original description: no original description) 0.730022412555127 39 PSME_00010545-RA (at2g44360 : 90.9) unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 181.8) & (original description: no original description) 0.7294724165206234 53 PSME_00036687-RA (at2g04845 : 134.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 393 Blast hits to 383 proteins in 188 species: Archae - 0; Bacteria - 98; Metazoa - 122; Fungi - 80; Plants - 36; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description) 0.7194180631827892 85 PSME_00018319-RA (at1g26550 : 229.0) FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (TAIR:AT2G18040.1); Has 6979 Blast hits to 6709 proteins in 1619 species: Archae - 14; Bacteria - 5328; Metazoa - 276; Fungi - 185; Plants - 213; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink). & (reliability: 458.0) & (original description: no original description) 0.716251093433467 86 PSME_00013074-RA (at2g33590 : 94.7) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: response to cadmium ion, lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G33600.1); Has 13062 Blast hits to 13044 proteins in 1974 species: Archae - 275; Bacteria - 5592; Metazoa - 467; Fungi - 894; Plants - 2514; Viruses - 60; Other Eukaryotes - 3260 (source: NCBI BLink). & (reliability: 189.4) & (original description: no original description) 0.7083113794139952 63 PSME_00057135-RA (p11402|atpd_spiol : 146.0) ATP synthase delta chain, chloroplast precursor (EC 3.6.3.14) - Spinacia oleracea (Spinach) & (at4g09650 : 140.0) Encodes the chloroplast ATPase delta-subunit.; ATP synthase delta-subunit gene (ATPD); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: response to cold, defense response to bacterium, photosynthetic electron transport in photosystem I, photosynthetic electron transport in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit, conserved site (InterPro:IPR020781), ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 4372 Blast hits to 4372 proteins in 1436 species: Archae - 0; Bacteria - 2635; Metazoa - 155; Fungi - 114; Plants - 153; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description) 0.70767505629294 64 PSME_00025340-RA no hits & (original description: no original description) 0.703167936802156 70 PSME_00004961-RA (at3g48330 : 93.6) encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.; protein-l-isoaspartate methyltransferase 1 (PIMT1); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: protein modification process, response to salt stress, aging, response to abscisic acid stimulus, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, seed; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: protein-l-isoaspartate methyltransferase 2 (TAIR:AT5G50240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43209|pimt_wheat : 88.6) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) (Protein-beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) - Triticum aestivum (Wheat) & (reliability: 187.2) & (original description: no original description) 0.7027827837087594 72 PSME_00025750-RA (at4g18593 : 159.0) dual specificity protein phosphatase-related; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description) 0.701416232279787 87 PSME_00037716-RA no hits & (original description: no original description) 0.7010152554295717 75 PSME_00034312-RA (at5g06480 : 147.0) Immunoglobulin E-set superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT3G11780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description) 0.6964029034013071 99 PSME_00023770-RA (p19954|rr30_spiol : 248.0) Plastid-specific 30S ribosomal protein 1, chloroplast precursor (PSRP-1) (CS-S5) (CS5) (S22) (Ribosomal protein 1) - Spinacia oleracea (Spinach) & (at5g24490 : 246.0) 30S ribosomal protein, putative; FUNCTIONS IN: structural constituent of ribosome, binding; INVOLVED IN: translation, primary metabolic process; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30Ae/sigma 54 modulation protein (InterPro:IPR003489); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 492.0) & (original description: no original description) 0.6954171744372654 83 PSME_00026982-RA (at1g08710 : 171.0) F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 110 Blast hits to 110 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 49; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description) 0.6933602203805888 86 PSME_00002503-RA (at3g55600 : 102.0) Membrane fusion protein Use1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Use1 (InterPro:IPR019150); BEST Arabidopsis thaliana protein match is: Membrane fusion protein Use1 (TAIR:AT1G54110.1); Has 235 Blast hits to 235 proteins in 85 species: Archae - 1; Bacteria - 13; Metazoa - 90; Fungi - 42; Plants - 82; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). & (reliability: 191.0) & (original description: no original description) 0.6908267043595168 87 PSME_00004027-RA (p29344|rr1_spiol : 395.0) 30S ribosomal protein S1, chloroplast precursor (CS1) - Spinacia oleracea (Spinach) & (at5g30510 : 381.0) ribosomal protein S1 (RPS1); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding proteins superfamily (TAIR:AT1G71720.1); Has 27453 Blast hits to 18967 proteins in 2720 species: Archae - 77; Bacteria - 20681; Metazoa - 178; Fungi - 177; Plants - 343; Viruses - 0; Other Eukaryotes - 5997 (source: NCBI BLink). & (reliability: 762.0) & (original description: no original description) 0.6903207681403923 90 PSME_00011835-RA (at5g39510 : 113.0) Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.; SHOOT GRAVITROPSIM 4 (SGR4); FUNCTIONS IN: receptor activity; INVOLVED IN: gravitropism, Golgi to vacuole transport, protein targeting to vacuole; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: vesicle transport V-snare 13 (TAIR:AT3G29100.1); Has 744 Blast hits to 742 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 276; Fungi - 144; Plants - 174; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). & (reliability: 226.0) & (original description: no original description) 0.685782209050971 96 PSME_00018088-RA (at1g75510 : 188.0) Transcription initiation factor IIF, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter; LOCATED IN: mitochondrion, transcription factor TFIIF complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196), Transcription initiation factor IIF, beta subunit, subgroup (InterPro:IPR016640); BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit (TAIR:AT3G52270.1); Has 346 Blast hits to 346 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 128; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). & (reliability: 376.0) & (original description: no original description) 0.6849534581032332 97 PSME_00019695-RA (at3g24030 : 311.0) hydroxyethylthiazole kinase family protein; FUNCTIONS IN: catalytic activity, hydroxyethylthiazole kinase activity; INVOLVED IN: thiamin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hydroxyethylthiazole kinase (InterPro:IPR000417), Hydroxyethylthiazole kinase, monofunctional (InterPro:IPR011144); Has 2753 Blast hits to 2753 proteins in 1214 species: Archae - 124; Bacteria - 2340; Metazoa - 2; Fungi - 135; Plants - 43; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 622.0) & (original description: no original description) 0.6828408811942382 100