Sequence Description Alias PCC hrr evm.model.tig00001001.9 no hits & (original description: no original description) 0.9424715825025759 1 evm.model.tig00020703.22 no hits & (original description: no original description) 0.931010822349802 8 evm.model.tig00021348.42 no hits & (original description: no original description) 0.9304691022549985 4 evm.model.tig00000889.12 no hits & (original description: no original description) 0.9227317257304604 73 evm.model.tig00000144.188 (at5g66750 : 92.4) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 80.9) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 184.8) & (original description: no original description) 0.9167803837279264 51 evm.model.tig00000093.55 no hits & (original description: no original description) 0.9137063625569961 42 evm.model.tig00020904.52 no hits & (original description: no original description) 0.9094422662835552 66 evm.model.tig00001187.10 no hits & (original description: no original description) 0.9081775473549312 8 evm.model.tig00020537.3 no hits & (original description: no original description) 0.9043088336181498 64 evm.model.tig00021352.40 (at5g46280 : 487.0) MINICHROMOSOME MAINTENANCE 3 (MCM3); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT4G02060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43704|mcm3_maize : 436.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 974.0) & (original description: no original description) 0.9041057702322082 72 evm.model.tig00000711.30 no hits & (original description: no original description) 0.9029688595745214 11 evm.model.tig00020912.79 no hits & (original description: no original description) 0.9014265740556567 12 evm.model.tig00000093.4 no hits & (original description: no original description) 0.9000807894424437 90 evm.model.tig00000737.5 (at4g12620 : 196.0) Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.; origin of replication complex 1B (ORC1B); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin recognition complex 1 (TAIR:AT4G14700.1); Has 5914 Blast hits to 5512 proteins in 383 species: Archae - 477; Bacteria - 4; Metazoa - 3209; Fungi - 806; Plants - 927; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink). & (reliability: 392.0) & (original description: no original description) 0.8973789592536647 48 evm.model.tig00021348.83 no hits & (original description: no original description) 0.896780563874938 76 evm.model.tig00021428.10 no hits & (original description: no original description) 0.8951019678912149 28 evm.model.tig00000042.66 (at4g13400 : 219.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G63290.1); Has 390 Blast hits to 389 proteins in 142 species: Archae - 0; Bacteria - 106; Metazoa - 14; Fungi - 122; Plants - 74; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). & (reliability: 438.0) & (original description: no original description) 0.8920483121259838 18 evm.model.tig00001333.26 no hits & (original description: no original description) 0.8915589568015009 32 evm.model.tig00001336.21 no hits & (original description: no original description) 0.8914824294892719 20 evm.model.tig00020556.70 (at2g43410 : 99.0) FPA is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous pathway). Mutations in FPA result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.; FPA; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 504799 Blast hits to 501692 proteins in 22138 species: Archae - 10949; Bacteria - 306025; Metazoa - 96089; Fungi - 13914; Plants - 29775; Viruses - 36050; Other Eukaryotes - 11997 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description) 0.889503832532887 23 evm.model.tig00021521.14 no hits & (original description: no original description) 0.8891389437022105 71 evm.model.tig00021680.23 no hits & (original description: no original description) 0.8884199617474521 25 evm.model.tig00000900.23 no hits & (original description: no original description) 0.8878038319145772 50 evm.model.tig00000880.20 no hits & (original description: no original description) 0.887583663388304 37 evm.model.tig00000037.21 (at4g29000 : 153.0) Tesmin/TSO1-like CXC domain-containing protein; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT2G20110.1); Has 1016 Blast hits to 666 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 4; Plants - 322; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description) 0.8841291437242955 49 evm.model.tig00020746.1 no hits & (original description: no original description) 0.8814166503167413 91 evm.model.tig00000042.241 no hits & (original description: no original description) 0.8812396080020841 98 evm.model.tig00000733.11 no hits & (original description: no original description) 0.8788249278958415 35 evm.model.tig00000624.6 no hits & (original description: no original description) 0.8784928044145478 70 evm.model.tig00000555.18 no hits & (original description: no original description) 0.8777416437217299 37 evm.model.tig00000042.61 no hits & (original description: no original description) 0.8763333409125204 71 evm.model.tig00000157.82 (q6zdy8|dhsa_orysa : 846.0) Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1) (FP) (Flavoprotein subunit of complex II) - Oryza sativa (Rice) & (at5g66760 : 841.0) One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.; succinate dehydrogenase 1-1 (SDH1-1); FUNCTIONS IN: cobalt ion binding, succinate dehydrogenase activity, ATP binding; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrial respiratory chain complex II, mitochondrion, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, flavoprotein subunit (InterPro:IPR011281), Fumarate reductase/succinate dehydrogenase, FAD-binding site (InterPro:IPR003952), Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (InterPro:IPR015939), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Succinate dehydrogenase/fumarate reductase, flavoprotein subunit (InterPro:IPR014006), Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (InterPro:IPR004112); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 1-2 (TAIR:AT2G18450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1682.0) & (original description: no original description) 0.8723564495859583 39 evm.model.tig00020554.162 no hits & (original description: no original description) 0.8699515941892924 41 evm.model.tig00020556.95 no hits & (original description: no original description) 0.8685856974411107 63 evm.model.tig00001466.2 no hits & (original description: no original description) 0.8666140301902084 97 evm.model.tig00000889.1 (at2g24820 : 139.0) translocon at the inner envelope membrane of chloroplasts 55-II (TIC55-II); FUNCTIONS IN: oxidoreductase activity, 2 iron, 2 sulfur cluster binding, chlorophyllide a oxygenase [overall] activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (TAIR:AT3G44880.1); Has 5409 Blast hits to 5405 proteins in 897 species: Archae - 6; Bacteria - 3841; Metazoa - 59; Fungi - 58; Plants - 409; Viruses - 0; Other Eukaryotes - 1036 (source: NCBI BLink). & (q9zwm5|cao_chlre : 103.0) Chlorophyllide a oxygenase, chloroplast precursor (EC 1.13.12.14) (Chlorophyll a oxygenase) (Chlorophyll b synthase) - Chlamydomonas reinhardtii & (reliability: 278.0) & (original description: no original description) 0.8660061495772763 48 evm.model.tig00000981.6 no hits & (original description: no original description) 0.8659559506105331 49 evm.model.tig00000169.3 no hits & (original description: no original description) 0.8637173838450006 88 evm.model.tig00000057.127 no hits & (original description: no original description) 0.8619704118989798 54 evm.model.tig00000189.1 no hits & (original description: no original description) 0.8617832016811074 70 evm.model.tig00021038.44 no hits & (original description: no original description) 0.8590929221752724 57 evm.model.tig00021351.9 no hits & (original description: no original description) 0.8590606790820714 58 evm.model.tig00021374.49 (at3g57870 : 204.0) Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.; sumo conjugation enzyme 1 (SCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 9584 Blast hits to 9566 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 4206; Fungi - 2037; Plants - 1834; Viruses - 20; Other Eukaryotes - 1487 (source: NCBI BLink). & (p35130|ubc2_medsa : 110.0) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) - Medicago sativa (Alfalfa) & (reliability: 408.0) & (original description: no original description) 0.8561876753006448 62 evm.model.tig00021720.8 no hits & (original description: no original description) 0.8543744523346319 67 evm.model.tig00000076.100 no hits & (original description: no original description) 0.8512000643480319 69 evm.model.tig00000865.65 no hits & (original description: no original description) 0.8484676519432098 72 evm.model.tig00021035.25 no hits & (original description: no original description) 0.8476171823733398 77 evm.model.tig00000319.21 (at3g10180 : 246.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G59540.1); Has 155291 Blast hits to 84008 proteins in 3275 species: Archae - 1854; Bacteria - 27736; Metazoa - 67441; Fungi - 13681; Plants - 10077; Viruses - 530; Other Eukaryotes - 33972 (source: NCBI BLink). & (p46869|fla10_chlre : 181.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 492.0) & (original description: no original description) 0.8460072592636211 76 evm.model.tig00000073.48 no hits & (original description: no original description) 0.8449598518484306 80 evm.model.tig00000145.29 no hits & (original description: no original description) 0.8401885806097389 85 evm.model.tig00000571.8 no hits & (original description: no original description) 0.8396649198020126 87 evm.model.tig00001056.19 (at2g21470 : 275.0) Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.; SUMO-activating enzyme 2 (SAE2); CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme repeat (InterPro:IPR000127), Ubiquitin-activating enzyme (InterPro:IPR019572), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: E1 C-terminal related 1 (TAIR:AT5G19180.1). & (p31251|ube12_wheat : 135.0) Ubiquitin-activating enzyme E1 2 - Triticum aestivum (Wheat) & (reliability: 550.0) & (original description: no original description) 0.8394976037196681 89 evm.model.tig00021015.12 no hits & (original description: no original description) 0.8393475435223878 90 evm.model.tig00000640.2 no hits & (original description: no original description) 0.8384221059866788 91 evm.model.tig00020592.29 no hits & (original description: no original description) 0.8382353698693029 92 evm.model.tig00020703.41 no hits & (original description: no original description) 0.8378114670940335 93 evm.model.tig00020904.102 no hits & (original description: no original description) 0.8357607902391153 96 evm.model.tig00021537.29 no hits & (original description: no original description) 0.8354379757622112 98