Sequence Description Alias PCC hrr evm.model.tig00020537.80 no hits & (original description: no original description) 0.9849946913708852 1 evm.model.tig00000692.52 no hits & (original description: no original description) 0.9723113385610823 12 evm.model.tig00020610.91 no hits & (original description: no original description) 0.9692374073416267 4 evm.model.tig00020537.14 (at1g04020 : 90.1) Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.; breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink). & (reliability: 180.2) & (original description: no original description) 0.968265585685438 13 evm.model.tig00021127.96 no hits & (original description: no original description) 0.9680953576647955 16 evm.model.tig00020685.12 no hits & (original description: no original description) 0.966811224422721 28 evm.model.tig00000545.28 (at5g17410 : 387.0) Spc97 / Spc98 family of spindle pole body (SBP) component; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 1351 Blast hits to 1243 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 645; Fungi - 324; Plants - 181; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). & (reliability: 774.0) & (original description: no original description) 0.9656398225652904 15 evm.model.tig00020723.89 no hits & (original description: no original description) 0.9655604704948952 8 evm.model.tig00000157.74 no hits & (original description: no original description) 0.9623407742663418 9 evm.model.tig00000480.44 no hits & (original description: no original description) 0.9619892827886607 10 evm.model.tig00020849.8 no hits & (original description: no original description) 0.960963773037093 11 evm.model.tig00020943.79 no hits & (original description: no original description) 0.9607355326523884 18 evm.model.tig00020903.11 no hits & (original description: no original description) 0.9605216246470437 13 evm.model.tig00021612.54 no hits & (original description: no original description) 0.9601523171371286 16 evm.model.tig00020592.20 no hits & (original description: no original description) 0.958967296693725 15 evm.model.tig00000405.22 no hits & (original description: no original description) 0.9587444795691763 18 evm.model.tig00020710.116 no hits & (original description: no original description) 0.9586970607706445 28 evm.model.tig00000900.37 no hits & (original description: no original description) 0.9584861576700715 34 evm.model.tig00020684.23 no hits & (original description: no original description) 0.9576303066836768 24 evm.model.tig00001056.24 no hits & (original description: no original description) 0.9572164645014192 36 evm.model.tig00000789.15 (at4g32700 : 299.0) Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal progression of DNA replication and for correct expression of genes during development.; helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of gene expression, DNA replication, DNA recombination, photomorphogenesis; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), DNA/RNA helicase, C-terminal (InterPro:IPR001650), DNA polymerase A domain (InterPro:IPR002298), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 17628 Blast hits to 16579 proteins in 2941 species: Archae - 600; Bacteria - 7507; Metazoa - 1254; Fungi - 1190; Plants - 590; Viruses - 412; Other Eukaryotes - 6075 (source: NCBI BLink). & (reliability: 598.0) & (original description: no original description) 0.9566680185456854 52 evm.model.tig00001154.43 (at5g52910 : 104.0) homolog of Drosophila timeless; TIMELESS (ATIM); CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description) 0.956116780376192 28 evm.model.tig00021489.49 no hits & (original description: no original description) 0.9559928409628172 35 evm.model.tig00020961.65 no hits & (original description: no original description) 0.9557459232028751 29 evm.model.tig00000383.55 no hits & (original description: no original description) 0.9550972127499417 43 evm.model.tig00020553.90 no hits & (original description: no original description) 0.9549294492997709 46 evm.model.tig00000142.23 no hits & (original description: no original description) 0.9542346721088563 29 evm.model.tig00001299.12 (at4g31400 : 91.7) Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development.; CTF7; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: sister chromatid cohesion, embryo sac development, embryo development; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-repair protein, UmuC-like (InterPro:IPR001126); Has 328 Blast hits to 327 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 149; Fungi - 104; Plants - 43; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). & (reliability: 183.4) & (original description: no original description) 0.9539130500806174 39 evm.model.tig00020943.54 no hits & (original description: no original description) 0.9537174107148021 29 evm.model.tig00021617.23 no hits & (original description: no original description) 0.9536866058465866 30 evm.model.tig00021318.39 no hits & (original description: no original description) 0.9532573383626507 31 evm.model.tig00001636.4 no hits & (original description: no original description) 0.9529893567215464 32 evm.model.tig00020943.53 no hits & (original description: no original description) 0.9527231169634448 33 evm.model.tig00021181.9 no hits & (original description: no original description) 0.9522090775993296 34 evm.model.tig00000849.35 no hits & (original description: no original description) 0.9517541573523962 35 evm.model.tig00020556.69 no hits & (original description: no original description) 0.9509298917144169 37 evm.model.tig00021035.22 no hits & (original description: no original description) 0.9506377175342797 37 evm.model.tig00020909.24 no hits & (original description: no original description) 0.9505735090957017 38 evm.model.tig00021348.12 (at2g20000 : 287.0) Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap.; HOBBIT (HBT); FUNCTIONS IN: binding; INVOLVED IN: in 10 processes; LOCATED IN: anaphase-promoting complex, nucleus, cell plate, spindle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G16320.1); Has 19127 Blast hits to 10740 proteins in 1344 species: Archae - 1126; Bacteria - 9300; Metazoa - 1888; Fungi - 782; Plants - 572; Viruses - 0; Other Eukaryotes - 5459 (source: NCBI BLink). & (reliability: 574.0) & (original description: no original description) 0.9498023184538816 39 evm.model.tig00021254.25 no hits & (original description: no original description) 0.9493281846384821 40 evm.model.tig00020616.20 no hits & (original description: no original description) 0.9491317654218291 41 evm.model.tig00020629.12 (at5g64630 : 142.0) Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.; FASCIATA 2 (FAS2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of histone chaperone HIRA (TAIR:AT3G44530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description) 0.9490931165917201 48 evm.model.tig00021719.5 no hits & (original description: no original description) 0.9478600448172365 46 evm.model.tig00000523.29 no hits & (original description: no original description) 0.9472204171255655 44 evm.model.tig00021072.44 no hits & (original description: no original description) 0.9471736539069807 45 evm.model.tig00020911.14 no hits & (original description: no original description) 0.9471696123394054 46 evm.model.tig00020556.80 (at1g08600 : 177.0) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (q7g8y3|isw2_orysa : 110.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 354.0) & (original description: no original description) 0.9467390088794764 47 evm.model.tig00000147.27 no hits & (original description: no original description) 0.9466560095515463 48 evm.model.tig00000042.231 (o81263|kith_orysa : 138.0) Thymidine kinase (EC 2.7.1.21) - Oryza sativa (Rice) & (at5g23070 : 136.0) Thymidine kinase; FUNCTIONS IN: thymidine kinase activity, ATP binding; INVOLVED IN: pyrimidine deoxyribonucleoside interconversion, anaerobic respiration; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidine kinase (InterPro:IPR001267), Thymidine kinase, conserved site (InterPro:IPR020633); BEST Arabidopsis thaliana protein match is: Thymidine kinase (TAIR:AT3G07800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description) 0.9463631466890142 49 evm.model.tig00000852.10 no hits & (original description: no original description) 0.945336168894101 50 evm.model.tig00000903.14 no hits & (original description: no original description) 0.9451706780318743 51 evm.model.tig00022104.3 no hits & (original description: no original description) 0.9448299160331646 52 evm.model.tig00020603.48 no hits & (original description: no original description) 0.944604619719022 53 evm.model.tig00000403.40 (at1g29630 : 229.0) 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G18090.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 458.0) & (original description: no original description) 0.9435917076231916 54 evm.model.tig00021135.15 no hits & (original description: no original description) 0.9434004384821032 55 evm.model.tig00021621.21 no hits & (original description: no original description) 0.9425644866665177 56 evm.model.tig00020800.19 no hits & (original description: no original description) 0.9423927774898274 57 evm.model.tig00001374.19 no hits & (original description: no original description) 0.9421718379165305 69 evm.model.tig00000383.47 no hits & (original description: no original description) 0.9406042448018915 59 evm.model.tig00000865.33 (p25387|gblp_chlre : 151.0) Guanine nucleotide-binding protein subunit beta-like protein - Chlamydomonas reinhardtii & (at3g49660 : 140.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description) 0.9400909096380332 62 evm.model.tig00000157.97 (at5g06680 : 125.0) Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.; spindle pole body component 98 (SPC98); CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259), Gamma tubulin complex protein 3 (InterPro:IPR015697); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT5G17410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description) 0.9400015361635143 61 evm.model.tig00020563.149 no hits & (original description: no original description) 0.9395542712069969 62 evm.model.tig00000157.106 no hits & (original description: no original description) 0.9394761658269171 63 evm.model.tig00000241.85 no hits & (original description: no original description) 0.9390188267051967 64 evm.model.tig00001030.24 (at5g19820 : 80.1) embryo defective 2734 (emb2734); FUNCTIONS IN: lyase activity, binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cell wall, phycobilisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G27640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 160.2) & (original description: no original description) 0.9389543044890296 65 evm.model.tig00021719.10 no hits & (original description: no original description) 0.9386289329149142 66 evm.model.tig00020961.145 (at4g15890 : 81.3) binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome condensation protein, HCP-6-related (InterPro:IPR012371), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G57060.1); Has 443 Blast hits to 428 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 128; Plants - 61; Viruses - 3; Other Eukaryotes - 63 (source: NCBI BLink). & (reliability: 162.6) & (original description: no original description) 0.9385683157253737 67 evm.model.tig00000254.117 no hits & (original description: no original description) 0.9381943127535767 68 evm.model.tig00000157.83 no hits & (original description: no original description) 0.9379857520364434 70 evm.model.tig00001265.8 no hits & (original description: no original description) 0.9378124127858966 70 evm.model.tig00000989.31 no hits & (original description: no original description) 0.9373890288581257 71 evm.model.tig00020902.44 no hits & (original description: no original description) 0.9363116836645091 72 evm.model.tig00000704.11 no hits & (original description: no original description) 0.9362365632573859 73 evm.model.tig00000692.44 no hits & (original description: no original description) 0.9362120350482102 74 evm.model.tig00021137.17 no hits & (original description: no original description) 0.9359512068104577 75 evm.model.tig00021435.12 (at5g27410 : 88.6) D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Methyltransferase-16, putative (InterPro:IPR019410); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT3G05190.1). & (reliability: 177.2) & (original description: no original description) 0.9357403340934984 76 evm.model.tig00001374.22 no hits & (original description: no original description) 0.9350061508034839 77 evm.model.tig00000215.102 (at5g13840 : 103.0) FIZZY-related 3 (FZR3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: FIZZY-related 2 (TAIR:AT4G22910.1). & (reliability: 187.2) & (original description: no original description) 0.934923677628741 78 evm.model.tig00020553.193 no hits & (original description: no original description) 0.934734838746102 79 evm.model.tig00020554.132 no hits & (original description: no original description) 0.9346059892375146 80 evm.model.tig00020554.125 no hits & (original description: no original description) 0.9345564857817338 81 evm.model.tig00000903.5 no hits & (original description: no original description) 0.9345209832972361 82 evm.model.tig00021742.7 no hits & (original description: no original description) 0.9341534372839616 83 evm.model.tig00021036.108 no hits & (original description: no original description) 0.9341168174598106 84 evm.model.tig00000139.19 no hits & (original description: no original description) 0.9337139963682668 85 evm.model.tig00020995.12 no hits & (original description: no original description) 0.932787446323889 86 evm.model.tig00020538.50 no hits & (original description: no original description) 0.9327437222399715 87 evm.model.tig00001497.2 no hits & (original description: no original description) 0.9325524915989083 88 evm.model.tig00000489.16 (at4g02070 : 188.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.; MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1). & (q9xgc9|msh2_maize : 111.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 376.0) & (original description: no original description) 0.9324362936966856 89 evm.model.tig00021036.12 no hits & (original description: no original description) 0.9322481727216424 90 evm.model.tig00000754.31 (at1g08130 : 306.0) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 80.9) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 612.0) & (original description: no original description) 0.9314256079718525 91 evm.model.tig00001574.4 no hits & (original description: no original description) 0.9313458362632625 92 evm.model.tig00001073.15 no hits & (original description: no original description) 0.9313368062960298 100 evm.model.tig00021616.10 (at4g25540 : 375.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). & (q9xgc9|msh2_maize : 143.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 750.0) & (original description: no original description) 0.9307545460084925 97 evm.model.tig00000880.33 no hits & (original description: no original description) 0.9306683942887926 95 evm.model.tig00001331.9 (at1g02970 : 220.0) Protein kinase that negatively regulates the entry into mitosis.; WEE1 kinase homolog (WEE1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.2); Has 100256 Blast hits to 98965 proteins in 4396 species: Archae - 165; Bacteria - 12308; Metazoa - 39873; Fungi - 10996; Plants - 18240; Viruses - 408; Other Eukaryotes - 18266 (source: NCBI BLink). & (q6ret6|ccamk_pea : 107.0) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (EC 2.7.11.17) (PsCCaMK) (Ps-SYM9) (Fragment) - Pisum sativum (Garden pea) & (reliability: 440.0) & (original description: no original description) 0.9306482073069072 96 evm.model.tig00020675.29 no hits & (original description: no original description) 0.9305948762372108 97 evm.model.tig00001107.10 (at1g67630 : 106.0) DNA polymerase alpha 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha, subunit B N-terminal (InterPro:IPR013627), DNA polymerase alpha, subunit B (InterPro:IPR016722), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 415 Blast hits to 412 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description) 0.9296376455350958 98 evm.model.tig00020537.22 no hits & (original description: no original description) 0.9296292527010921 99 evm.model.tig00021434.9 no hits & (original description: no original description) 0.9294410707040588 100