Sequence Description Alias PCC hrr evm.model.tig00020710.116 no hits & (original description: no original description) 0.986577762647995 1 evm.model.tig00001299.12 (at4g31400 : 91.7) Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development.; CTF7; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: sister chromatid cohesion, embryo sac development, embryo development; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-repair protein, UmuC-like (InterPro:IPR001126); Has 328 Blast hits to 327 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 149; Fungi - 104; Plants - 43; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). & (reliability: 183.4) & (original description: no original description) 0.9801361228772615 6 evm.model.tig00000042.231 (o81263|kith_orysa : 138.0) Thymidine kinase (EC 2.7.1.21) - Oryza sativa (Rice) & (at5g23070 : 136.0) Thymidine kinase; FUNCTIONS IN: thymidine kinase activity, ATP binding; INVOLVED IN: pyrimidine deoxyribonucleoside interconversion, anaerobic respiration; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidine kinase (InterPro:IPR001267), Thymidine kinase, conserved site (InterPro:IPR020633); BEST Arabidopsis thaliana protein match is: Thymidine kinase (TAIR:AT3G07800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description) 0.9772477841876895 4 evm.model.tig00021489.49 no hits & (original description: no original description) 0.9755409650593345 8 evm.model.tig00021036.12 no hits & (original description: no original description) 0.9752602580228703 5 evm.model.tig00021612.54 no hits & (original description: no original description) 0.9741135475714879 6 evm.model.tig00000545.28 (at5g17410 : 387.0) Spc97 / Spc98 family of spindle pole body (SBP) component; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 1351 Blast hits to 1243 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 645; Fungi - 324; Plants - 181; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). & (reliability: 774.0) & (original description: no original description) 0.9738883002276809 7 evm.model.tig00020553.90 no hits & (original description: no original description) 0.9721907720774478 14 evm.model.tig00020961.65 no hits & (original description: no original description) 0.9716511275070691 9 evm.model.tig00000692.52 no hits & (original description: no original description) 0.9711565904610272 14 evm.model.tig00000405.22 no hits & (original description: no original description) 0.9698014239801719 11 evm.model.tig00020616.19 no hits & (original description: no original description) 0.9677322963348056 12 evm.model.tig00020537.14 (at1g04020 : 90.1) Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.; breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink). & (reliability: 180.2) & (original description: no original description) 0.9644544649825926 22 evm.model.tig00021127.96 no hits & (original description: no original description) 0.9640406059063064 24 evm.model.tig00020685.12 no hits & (original description: no original description) 0.9640267561747484 34 evm.model.tig00020684.23 no hits & (original description: no original description) 0.9634434198027658 16 evm.model.tig00021035.22 no hits & (original description: no original description) 0.9632982119713565 17 evm.model.tig00000900.37 no hits & (original description: no original description) 0.9630555763020192 22 evm.model.tig00021072.44 no hits & (original description: no original description) 0.9614734933390033 19 evm.model.tig00000139.19 no hits & (original description: no original description) 0.9613692821582649 20 evm.model.tig00020943.79 no hits & (original description: no original description) 0.9598393938345855 21 evm.model.tig00000142.23 no hits & (original description: no original description) 0.9593876421862267 22 evm.model.tig00021135.15 no hits & (original description: no original description) 0.9584174973376193 23 evm.model.tig00000989.31 no hits & (original description: no original description) 0.9546152760171189 24 evm.model.tig00000806.37 no hits & (original description: no original description) 0.9531977128923912 25 evm.model.tig00000254.117 no hits & (original description: no original description) 0.9520186473975526 26 evm.model.tig00000480.44 no hits & (original description: no original description) 0.9519570950263847 27 evm.model.tig00001056.24 no hits & (original description: no original description) 0.9499841451671919 52 evm.model.tig00020537.22 no hits & (original description: no original description) 0.9497385578997583 29 evm.model.tig00020849.8 no hits & (original description: no original description) 0.9495837326567459 30 evm.model.tig00020554.125 no hits & (original description: no original description) 0.9493192298951372 31 evm.model.tig00020961.28 (at4g35740 : 303.0) Encodes RECQ3, an ATP-dependent helicase.; RecQl3; FUNCTIONS IN: ATP binding, ATP-dependent helicase activity; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 28158 Blast hits to 28089 proteins in 2765 species: Archae - 286; Bacteria - 16813; Metazoa - 3341; Fungi - 2669; Plants - 1491; Viruses - 10; Other Eukaryotes - 3548 (source: NCBI BLink). & (p46942|db10_nicsy : 90.5) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 580.0) & (original description: no original description) 0.9491317654218291 41 evm.model.tig00000147.27 no hits & (original description: no original description) 0.9486496235954236 33 evm.model.tig00021318.39 no hits & (original description: no original description) 0.9482490539500679 34 evm.model.tig00021719.5 no hits & (original description: no original description) 0.9472105460152936 47 evm.model.tig00020801.34 no hits & (original description: no original description) 0.946565510437626 36 evm.model.tig00001154.43 (at5g52910 : 104.0) homolog of Drosophila timeless; TIMELESS (ATIM); CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description) 0.9456319020299222 50 evm.model.tig00001030.24 (at5g19820 : 80.1) embryo defective 2734 (emb2734); FUNCTIONS IN: lyase activity, binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cell wall, phycobilisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G27640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 160.2) & (original description: no original description) 0.9451780132966902 38 evm.model.tig00020537.80 no hits & (original description: no original description) 0.9450772057698913 51 evm.model.tig00000789.15 (at4g32700 : 299.0) Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal progression of DNA replication and for correct expression of genes during development.; helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of gene expression, DNA replication, DNA recombination, photomorphogenesis; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), DNA/RNA helicase, C-terminal (InterPro:IPR001650), DNA polymerase A domain (InterPro:IPR002298), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 17628 Blast hits to 16579 proteins in 2941 species: Archae - 600; Bacteria - 7507; Metazoa - 1254; Fungi - 1190; Plants - 590; Viruses - 412; Other Eukaryotes - 6075 (source: NCBI BLink). & (reliability: 598.0) & (original description: no original description) 0.9446916964966553 83 evm.model.tig00000237.27 (at5g52800 : 126.0) DNA primases; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA primase, UL52/UL70 type, Herpesviridae (InterPro:IPR004340); Has 201 Blast hits to 173 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 0; Plants - 45; Viruses - 8; Other Eukaryotes - 66 (source: NCBI BLink). & (reliability: 252.0) & (original description: no original description) 0.9436547905623394 41 evm.model.tig00020614.39 (at3g19210 : 499.0) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination.; homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1). & (q7g8y3|isw2_orysa : 192.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 998.0) & (original description: no original description) 0.9424167594776469 42 evm.model.tig00000865.33 (p25387|gblp_chlre : 151.0) Guanine nucleotide-binding protein subunit beta-like protein - Chlamydomonas reinhardtii & (at3g49660 : 140.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description) 0.9416565710344762 58 evm.model.tig00000254.120 no hits & (original description: no original description) 0.9413291312141732 44 evm.model.tig00020563.196 (original description: no original description) 0.9410655083248145 45 evm.model.tig00000241.85 no hits & (original description: no original description) 0.9405662224898449 46 evm.model.tig00020943.41 (at2g25100 : 214.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, RNA binding, catalytic activity, nucleic acid binding; INVOLVED IN: RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit A (InterPro:IPR004649), Ribonuclease HII/HIII (InterPro:IPR001352), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); Has 6305 Blast hits to 6298 proteins in 2456 species: Archae - 256; Bacteria - 4469; Metazoa - 152; Fungi - 137; Plants - 56; Viruses - 3; Other Eukaryotes - 1232 (source: NCBI BLink). & (reliability: 428.0) & (original description: no original description) 0.9404368244785063 47 evm.model.tig00000076.67 (at1g44110 : 156.0) Cyclin A1;1 (CYCA1;1); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCLIN A1;2 (TAIR:AT1G77390.1); Has 4548 Blast hits to 4417 proteins in 376 species: Archae - 0; Bacteria - 4; Metazoa - 1999; Fungi - 561; Plants - 1168; Viruses - 34; Other Eukaryotes - 782 (source: NCBI BLink). & (p30278|ccnb2_medsa : 124.0) G2/mitotic-specific cyclin-2 (B-like cyclin) (CycMs2) (Fragment) - Medicago sativa (Alfalfa) & (reliability: 312.0) & (original description: no original description) 0.9402303430672171 48 evm.model.tig00020556.69 no hits & (original description: no original description) 0.9396433248864016 68 evm.model.tig00021319.67 (at2g29570 : 310.0) Functionally interacts with POLH to repair DNA damaged by UVB damage.; proliferating cell nuclear antigen 2 (PCNA2); FUNCTIONS IN: DNA binding, DNA polymerase processivity factor activity; INVOLVED IN: regulation of DNA replication, error-prone translesion synthesis; LOCATED IN: PCNA complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730), Proliferating cell nuclear antigen, PCNA, C-terminal (InterPro:IPR022649), Proliferating cell nuclear antigen, PCNA, conserved site (InterPro:IPR022659), Proliferating cell nuclear antigen, PCNA, N-terminal (InterPro:IPR022648); BEST Arabidopsis thaliana protein match is: proliferating cellular nuclear antigen 1 (TAIR:AT1G07370.1); Has 1860 Blast hits to 1848 proteins in 457 species: Archae - 391; Bacteria - 0; Metazoa - 314; Fungi - 169; Plants - 159; Viruses - 73; Other Eukaryotes - 754 (source: NCBI BLink). & (o82134|pcna_pea : 310.0) Proliferating cell nuclear antigen - Pisum sativum (Garden pea) & (reliability: 620.0) & (original description: no original description) 0.9363928593712617 59 evm.model.tig00000383.47 no hits & (original description: no original description) 0.9356228734078906 57 evm.model.tig00000704.11 no hits & (original description: no original description) 0.9354284996126246 52 evm.model.tig00001049.34 no hits & (original description: no original description) 0.9344294630992357 53 evm.model.tig00020592.20 no hits & (original description: no original description) 0.934288828508008 54 evm.model.tig00000523.29 no hits & (original description: no original description) 0.9333836946871575 55 evm.model.tig00020830.65 (at5g38110 : 204.0) This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.; anti- silencing function 1b (ASF1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA mediated transformation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like (InterPro:IPR006818); BEST Arabidopsis thaliana protein match is: ASF1 like histone chaperone (TAIR:AT1G66740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 408.0) & (original description: no original description) 0.933086350411712 56 evm.model.tig00001304.2 (at5g43530 : 228.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: in 6 functions; LOCATED IN: chloroplast envelope; EXPRESSED IN: shoot apex, embryo, male gametophyte, flower, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 442.0) & (original description: no original description) 0.9329283038606523 58 evm.model.tig00021621.21 no hits & (original description: no original description) 0.9327302252348841 58 evm.model.tig00001229.9 no hits & (original description: no original description) 0.9319906312252978 59 evm.model.tig00001073.15 no hits & (original description: no original description) 0.9315282301918908 99 evm.model.tig00001107.10 (at1g67630 : 106.0) DNA polymerase alpha 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha, subunit B N-terminal (InterPro:IPR013627), DNA polymerase alpha, subunit B (InterPro:IPR016722), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 415 Blast hits to 412 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description) 0.9313685163574061 89 evm.model.tig00021742.7 no hits & (original description: no original description) 0.9313472694087856 76 evm.model.tig00020927.53 no hits & (original description: no original description) 0.9305460326873143 63 evm.model.tig00001024.7 no hits & (original description: no original description) 0.929291503901019 64 evm.model.tig00000498.58 no hits & (original description: no original description) 0.9285800723978475 65 evm.model.tig00001030.21 no hits & (original description: no original description) 0.9284316586843364 66 evm.model.tig00001000.13 no hits & (original description: no original description) 0.9282905776888626 67 evm.model.tig00020995.12 no hits & (original description: no original description) 0.928097943254045 68 evm.model.tig00000157.83 no hits & (original description: no original description) 0.9278308887923727 92 evm.model.tig00020911.14 no hits & (original description: no original description) 0.9273777229173537 71 evm.model.tig00000882.29 no hits & (original description: no original description) 0.9273717312658942 71 evm.model.tig00020684.26 (at3g02920 : 90.9) RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication protein A, subunit RPA32 (InterPro:IPR014646), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication protein A, C-terminal (InterPro:IPR014892); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2). & (reliability: 181.8) & (original description: no original description) 0.9271222265022324 75 evm.model.tig00020610.91 no hits & (original description: no original description) 0.9262152783885975 99 evm.model.tig00001574.4 no hits & (original description: no original description) 0.9258953869876211 75 evm.model.tig00000144.81 (at5g05970 : 123.0) a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis; NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1 (NEDD1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: in 6 processes; LOCATED IN: kinetochore microtubule, CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 246.0) & (original description: no original description) 0.9256978155709756 76 evm.model.tig00000692.44 no hits & (original description: no original description) 0.9256050473645785 77 evm.model.tig00020610.90 no hits & (original description: no original description) 0.9254660257289635 78 evm.model.tig00000663.27 no hits & (original description: no original description) 0.9246854816832414 79 evm.model.tig00020563.149 no hits & (original description: no original description) 0.9243691215074461 80 evm.model.tig00000388.21 (at3g18630 : 220.0) Encodes a uracil-DNA glycosylase (UDG) involved in a base excision DNA repair pathway in mitochondria.; uracil dna glycosylase (UNG); FUNCTIONS IN: uracil DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Uracil-DNA glycosylase (InterPro:IPR002043), Uracil-DNA glycosylase-like (InterPro:IPR005122); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10550.1); Has 5606 Blast hits to 5606 proteins in 2219 species: Archae - 2; Bacteria - 4117; Metazoa - 124; Fungi - 141; Plants - 47; Viruses - 234; Other Eukaryotes - 941 (source: NCBI BLink). & (reliability: 440.0) & (original description: no original description) 0.9241724496505984 81 evm.model.tig00020556.23 no hits & (original description: no original description) 0.9239153526943725 82 evm.model.tig00000411.22 no hits & (original description: no original description) 0.9233915376541093 83 evm.model.tig00000940.20 (at4g35470 : 118.0) Encodes PIRL4, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 4 (PIRL4); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 5 (TAIR:AT2G17440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description) 0.9232987282414156 84 evm.model.tig00021350.35 (at1g78770 : 429.0) anaphase promoting complex 6 (APC6); FUNCTIONS IN: binding; INVOLVED IN: regulation of DNA endoreduplication, phloem or xylem histogenesis, cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-3 (InterPro:IPR011716), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 10888 Blast hits to 7341 proteins in 968 species: Archae - 487; Bacteria - 4678; Metazoa - 2008; Fungi - 460; Plants - 439; Viruses - 0; Other Eukaryotes - 2816 (source: NCBI BLink). & (reliability: 858.0) & (original description: no original description) 0.9231110207969194 85 evm.model.tig00020723.89 no hits & (original description: no original description) 0.9229227650725527 86 evm.model.tig00020909.24 no hits & (original description: no original description) 0.9218691228707789 98 evm.model.tig00021127.68 no hits & (original description: no original description) 0.9211481268291167 89 evm.model.tig00020603.31 no hits & (original description: no original description) 0.9208179749477327 90 evm.model.tig00000076.52 no hits & (original description: no original description) 0.9205055694104437 92 evm.model.tig00000241.178 (q9lre5|dpod2_orysa : 317.0) DNA polymerase delta small subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at2g42120 : 311.0) DNA polymerase delta small subunit (POLD2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 622.0) & (original description: no original description) 0.9194391358851952 94 evm.model.tig00000157.74 no hits & (original description: no original description) 0.9193108611458033 99 evm.model.tig00021318.67 (at5g47010 : 96.3) Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes.; LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink). & (reliability: 192.6) & (original description: no original description) 0.9185056505062469 96 evm.model.tig00001636.4 no hits & (original description: no original description) 0.9180597788453023 97 evm.model.tig00020800.19 no hits & (original description: no original description) 0.9178372431010309 98 evm.model.tig00000903.5 no hits & (original description: no original description) 0.9175478808597008 100