Sequence Description Alias PCC hrr evm.model.tig00020685.12 no hits & (original description: no original description) 0.9649817922312485 31 evm.model.tig00000849.10 no hits & (original description: no original description) 0.9637321714367416 4 evm.model.tig00000523.29 no hits & (original description: no original description) 0.963595339128267 7 evm.model.tig00001056.24 no hits & (original description: no original description) 0.9611034706864077 30 evm.model.tig00000489.16 (at4g02070 : 188.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.; MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1). & (q9xgc9|msh2_maize : 111.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 376.0) & (original description: no original description) 0.9586719852172848 19 evm.model.tig00021616.10 (at4g25540 : 375.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). & (q9xgc9|msh2_maize : 143.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 750.0) & (original description: no original description) 0.9573016246236403 34 evm.model.tig00000900.37 no hits & (original description: no original description) 0.9562117158260793 38 evm.model.tig00020629.12 (at5g64630 : 142.0) Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.; FASCIATA 2 (FAS2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of histone chaperone HIRA (TAIR:AT3G44530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description) 0.9554086693273646 35 evm.model.tig00000219.16 (at2g14260 : 192.0) encodes proline iminopeptidase; proline iminopeptidase (PIP); FUNCTIONS IN: aminopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S33, proline iminopeptidase 1 (InterPro:IPR005944), Peptidase S33, prolyl aminopeptidase (InterPro:IPR002410), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description) 0.9553948222198274 9 evm.model.tig00000851.12 no hits & (original description: no original description) 0.9552910141439156 10 evm.model.tig00022104.3 no hits & (original description: no original description) 0.9549576519673337 21 evm.model.tig00021127.96 no hits & (original description: no original description) 0.9529423020262314 41 evm.model.tig00000189.50 (at2g47980 : 176.0) Essential to the monopolar orientation of the kinetochores during meiosis.; sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description) 0.9520592759044565 14 evm.model.tig00020943.54 no hits & (original description: no original description) 0.9503035773990803 35 evm.model.tig00020537.14 (at1g04020 : 90.1) Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.; breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink). & (reliability: 180.2) & (original description: no original description) 0.9498054368625639 46 evm.model.tig00001304.2 (at5g43530 : 228.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: in 6 functions; LOCATED IN: chloroplast envelope; EXPRESSED IN: shoot apex, embryo, male gametophyte, flower, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 442.0) & (original description: no original description) 0.947898958685791 32 evm.model.tig00000237.42 (o48653|dpola_orysa : 568.0) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g67100 : 554.0) Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.; INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1108.0) & (original description: no original description) 0.9477862100497729 55 evm.model.tig00001154.43 (at5g52910 : 104.0) homolog of Drosophila timeless; TIMELESS (ATIM); CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description) 0.94724411578564 48 evm.model.tig00021181.9 no hits & (original description: no original description) 0.9451255125771872 33 evm.model.tig00000789.15 (at4g32700 : 299.0) Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal progression of DNA replication and for correct expression of genes during development.; helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of gene expression, DNA replication, DNA recombination, photomorphogenesis; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), DNA/RNA helicase, C-terminal (InterPro:IPR001650), DNA polymerase A domain (InterPro:IPR002298), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 17628 Blast hits to 16579 proteins in 2941 species: Archae - 600; Bacteria - 7507; Metazoa - 1254; Fungi - 1190; Plants - 590; Viruses - 412; Other Eukaryotes - 6075 (source: NCBI BLink). & (reliability: 598.0) & (original description: no original description) 0.9448700312027007 81 evm.model.tig00001545.7 (q9lre6|dpod1_orysa : 1007.0) DNA polymerase delta catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g63960 : 1000.0) EMBRYO DEFECTIVE 2780 (EMB2780); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: recovery protein 3 (TAIR:AT1G67500.2). & (reliability: 2000.0) & (original description: no original description) 0.9429014723150793 56 evm.model.tig00020553.90 no hits & (original description: no original description) 0.9427874643650734 70 evm.model.tig00021137.17 no hits & (original description: no original description) 0.9426240738797661 51 evm.model.tig00001224.8 (at3g18524 : 614.0) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.; MUTS homolog 2 (MSH2); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, negative regulation of reciprocal meiotic recombination; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein, MSH2 (InterPro:IPR011184); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 13560 Blast hits to 13453 proteins in 2654 species: Archae - 128; Bacteria - 8942; Metazoa - 734; Fungi - 813; Plants - 457; Viruses - 3; Other Eukaryotes - 2483 (source: NCBI BLink). & (q9xgc9|msh2_maize : 591.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 1228.0) & (original description: no original description) 0.9420396678097162 56 evm.model.tig00001374.19 no hits & (original description: no original description) 0.9415672421134117 70 evm.model.tig00000383.55 no hits & (original description: no original description) 0.9406638676052541 73 evm.model.tig00020610.91 no hits & (original description: no original description) 0.9401074296410034 66 evm.model.tig00001331.9 (at1g02970 : 220.0) Protein kinase that negatively regulates the entry into mitosis.; WEE1 kinase homolog (WEE1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.2); Has 100256 Blast hits to 98965 proteins in 4396 species: Archae - 165; Bacteria - 12308; Metazoa - 39873; Fungi - 10996; Plants - 18240; Viruses - 408; Other Eukaryotes - 18266 (source: NCBI BLink). & (q6ret6|ccamk_pea : 107.0) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (EC 2.7.11.17) (PsCCaMK) (Ps-SYM9) (Fragment) - Pisum sativum (Garden pea) & (reliability: 440.0) & (original description: no original description) 0.9392560537395779 52 evm.model.tig00000692.52 no hits & (original description: no original description) 0.9391170745444865 81 evm.model.tig00021428.12 (at2g46520 : 613.0) cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative; FUNCTIONS IN: protein transporter activity, importin-alpha export receptor activity, binding; INVOLVED IN: intracellular protein transport, cell proliferation, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), CAS/CSE, C-terminal (InterPro:IPR005043), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Exportin/Importin, Cse1-like (InterPro:IPR013713); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.2); Has 1154 Blast hits to 1141 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 461; Fungi - 384; Plants - 163; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink). & (reliability: 1226.0) & (original description: no original description) 0.9389261991277373 30 evm.model.tig00001574.4 no hits & (original description: no original description) 0.9388513970231572 31 evm.model.tig00021318.67 (at5g47010 : 96.3) Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes.; LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink). & (reliability: 192.6) & (original description: no original description) 0.9385703779550435 32 evm.model.tig00001073.15 no hits & (original description: no original description) 0.938045550401844 76 evm.model.tig00020563.82 no hits & (original description: no original description) 0.9378694008515801 34 evm.model.tig00000571.19 (at2g19330 : 115.0) Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 6 (PIRL6); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 7 (TAIR:AT4G29880.1); Has 63918 Blast hits to 28732 proteins in 1043 species: Archae - 35; Bacteria - 6419; Metazoa - 27911; Fungi - 2141; Plants - 23572; Viruses - 21; Other Eukaryotes - 3819 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description) 0.9374820779330009 57 evm.model.tig00020603.48 no hits & (original description: no original description) 0.9342519757351908 61 evm.model.tig00000754.31 (at1g08130 : 306.0) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 80.9) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 612.0) & (original description: no original description) 0.934207643521033 73 evm.model.tig00001107.10 (at1g67630 : 106.0) DNA polymerase alpha 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha, subunit B N-terminal (InterPro:IPR013627), DNA polymerase alpha, subunit B (InterPro:IPR016722), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 415 Blast hits to 412 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description) 0.9339137650056091 78 evm.model.tig00000823.19 (at2g06510 : 172.0) Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.; replication protein A 1A (RPA1A); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT4G19130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description) 0.9333757176020723 39 evm.model.tig00021432.30 no hits & (original description: no original description) 0.9330498939627646 40 evm.model.tig00000227.41 (at1g77620 : 80.9) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; INVOLVED IN: DNA repair, cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 1511 Blast hits to 1466 proteins in 328 species: Archae - 281; Bacteria - 0; Metazoa - 363; Fungi - 421; Plants - 133; Viruses - 9; Other Eukaryotes - 304 (source: NCBI BLink). & (reliability: 161.8) & (original description: no original description) 0.9329652823711924 41 evm.model.tig00021489.49 no hits & (original description: no original description) 0.9316783783013084 89 evm.model.tig00000571.18 no hits & (original description: no original description) 0.9314861957316815 43 evm.model.tig00020556.69 no hits & (original description: no original description) 0.9314413656573689 89 evm.model.tig00000157.83 no hits & (original description: no original description) 0.9309788240228617 81 evm.model.tig00021742.7 no hits & (original description: no original description) 0.9298410587603175 80 evm.model.tig00000144.127 no hits & (original description: no original description) 0.9273200185800614 48 evm.model.tig00000383.89 no hits & (original description: no original description) 0.9272391678545714 88 evm.model.tig00000113.108 no hits & (original description: no original description) 0.9258745186001016 52 evm.model.tig00001085.10 no hits & (original description: no original description) 0.9252418381816544 53 evm.model.tig00000388.44 no hits & (original description: no original description) 0.9251926282466614 54 evm.model.tig00001299.12 (at4g31400 : 91.7) Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development.; CTF7; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: sister chromatid cohesion, embryo sac development, embryo development; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-repair protein, UmuC-like (InterPro:IPR001126); Has 328 Blast hits to 327 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 149; Fungi - 104; Plants - 43; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). & (reliability: 183.4) & (original description: no original description) 0.9250718735809831 100 evm.model.tig00000073.22 no hits & (original description: no original description) 0.9233061377101489 57 evm.model.tig00021135.15 no hits & (original description: no original description) 0.9229552515532432 60 evm.model.tig00000204.89 no hits & (original description: no original description) 0.9227584719184646 59 evm.model.tig00021348.12 (at2g20000 : 287.0) Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap.; HOBBIT (HBT); FUNCTIONS IN: binding; INVOLVED IN: in 10 processes; LOCATED IN: anaphase-promoting complex, nucleus, cell plate, spindle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G16320.1); Has 19127 Blast hits to 10740 proteins in 1344 species: Archae - 1126; Bacteria - 9300; Metazoa - 1888; Fungi - 782; Plants - 572; Viruses - 0; Other Eukaryotes - 5459 (source: NCBI BLink). & (reliability: 574.0) & (original description: no original description) 0.9223750252445896 74 evm.model.tig00001187.15 no hits & (original description: no original description) 0.9220907327989377 61 evm.model.tig00021462.13 (at3g54610 : 310.0) Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14.; histone acetyltransferase of the GNAT family 1 (HAG1); FUNCTIONS IN: histone acetyltransferase activity, DNA binding, H3 histone acetyltransferase activity; INVOLVED IN: flower development, histone acetylation, response to light stimulus, positive regulation of transcription, root morphogenesis; LOCATED IN: histone acetyltransferase complex, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Bromodomain, conserved site (InterPro:IPR018359), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1); Has 13698 Blast hits to 5805 proteins in 367 species: Archae - 4; Bacteria - 1437; Metazoa - 4852; Fungi - 1484; Plants - 516; Viruses - 1; Other Eukaryotes - 5404 (source: NCBI BLink). & (reliability: 620.0) & (original description: no original description) 0.9218887207775497 62 evm.model.tig00000545.42 no hits & (original description: no original description) 0.9209453240341889 76 evm.model.tig00020554.107 no hits & (original description: no original description) 0.9206753776930949 65 evm.model.tig00020554.16 no hits & (original description: no original description) 0.9197372410276863 80 evm.model.tig00000692.44 no hits & (original description: no original description) 0.9181098138287226 69 evm.model.tig00000383.47 no hits & (original description: no original description) 0.9179137963813496 97 evm.model.tig00001042.14 (at1g05910 : 332.0) cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1); Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526; Bacteria - 25275; Metazoa - 14857; Fungi - 7046; Plants - 4267; Viruses - 557; Other Eukaryotes - 14126 (source: NCBI BLink). & (p54774|cdc48_soybn : 130.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 664.0) & (original description: no original description) 0.9174844761667702 76 evm.model.tig00000194.33 no hits & (original description: no original description) 0.917300787952665 72 evm.model.tig00001694.3 no hits & (original description: no original description) 0.9170247895686507 73 evm.model.tig00021108.13 (at1g08730 : 660.0) Class XI myosin gene; XIC; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 57567 Blast hits to 36765 proteins in 2556 species: Archae - 784; Bacteria - 7621; Metazoa - 29049; Fungi - 4176; Plants - 2435; Viruses - 163; Other Eukaryotes - 13339 (source: NCBI BLink). & (reliability: 1320.0) & (original description: no original description) 0.9160389868780002 76 evm.model.tig00000190.18 no hits & (original description: no original description) 0.9158489261063216 77 evm.model.tig00021582.17 no hits & (original description: no original description) 0.913344361169128 80 evm.model.tig00000361.77 (at3g10180 : 311.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G59540.1); Has 155291 Blast hits to 84008 proteins in 3275 species: Archae - 1854; Bacteria - 27736; Metazoa - 67441; Fungi - 13681; Plants - 10077; Viruses - 530; Other Eukaryotes - 33972 (source: NCBI BLink). & (p46869|fla10_chlre : 233.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 622.0) & (original description: no original description) 0.913091543142346 81 evm.model.tig00000889.12 no hits & (original description: no original description) 0.9111561415025103 97 evm.model.tig00000711.46 (at2g27170 : 471.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN7 (TTN7); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 158776 Blast hits to 77347 proteins in 3496 species: Archae - 2059; Bacteria - 28403; Metazoa - 67946; Fungi - 11949; Plants - 6773; Viruses - 706; Other Eukaryotes - 40940 (source: NCBI BLink). & (reliability: 942.0) & (original description: no original description) 0.9109629494102665 85 evm.model.tig00000789.3 no hits & (original description: no original description) 0.9107677776006718 86 evm.model.tig00020610.94 no hits & (original description: no original description) 0.9104787950978691 87 evm.model.tig00021179.51 no hits & (original description: no original description) 0.909605315551764 88 evm.model.tig00000144.112 no hits & (original description: no original description) 0.9095083987875254 89 evm.model.tig00021254.25 no hits & (original description: no original description) 0.9078350495832127 91 evm.model.tig00021621.29 no hits & (original description: no original description) 0.9077679428415336 92 evm.model.tig00020830.119 no hits & (original description: no original description) 0.9073961656598338 93 evm.model.tig00000388.53 no hits & (original description: no original description) 0.9068963908384103 95 evm.model.tig00020909.3 (at3g04810 : 212.0) Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.; NIMA-related kinase 2 (NEK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 3 (TAIR:AT5G28290.1); Has 124376 Blast hits to 122221 proteins in 4182 species: Archae - 113; Bacteria - 14280; Metazoa - 45892; Fungi - 12262; Plants - 30619; Viruses - 487; Other Eukaryotes - 20723 (source: NCBI BLink). & (q5qn75|m2k1_orysa : 129.0) Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK1) (OsMEK1) - Oryza sativa (Rice) & (reliability: 424.0) & (original description: no original description) 0.9064062068091493 96 evm.model.tig00020563.29 (at2g28840 : 85.5) XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description) 0.9058591253857519 99