Sequence Description Alias PCC hrr evm.model.tig00000955.23 (at5g46070 : 172.0) Guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: guanylate-binding family protein (TAIR:AT1G03830.2); Has 135716 Blast hits to 74856 proteins in 3470 species: Archae - 1642; Bacteria - 27962; Metazoa - 58309; Fungi - 11332; Plants - 7596; Viruses - 496; Other Eukaryotes - 28379 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description) 0.9372958152731145 4 evm.model.tig00001164.17 no hits & (original description: no original description) 0.9347483566008531 3 evm.model.tig00000829.5 (at3g18520 : 128.0) Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.; histone deacetylase 15 (HDA15); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, histone deacetylation; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9308 Blast hits to 9105 proteins in 1476 species: Archae - 223; Bacteria - 3234; Metazoa - 1500; Fungi - 655; Plants - 551; Viruses - 0; Other Eukaryotes - 3145 (source: NCBI BLink). & (p56521|hdac_maize : 87.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 256.0) & (original description: no original description) 0.9340623521450586 3 evm.model.tig00001164.12 (at3g43210 : 85.9) Encodes a kinesin TETRASPORE. Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis.; TETRASPORE (TES); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT1G18370.1); Has 14242 Blast hits to 13167 proteins in 521 species: Archae - 65; Bacteria - 318; Metazoa - 6487; Fungi - 1661; Plants - 2059; Viruses - 3; Other Eukaryotes - 3649 (source: NCBI BLink). & (reliability: 171.8) & (original description: no original description) 0.9246242520710091 5 evm.model.tig00020563.24 no hits & (original description: no original description) 0.914251012556163 5 evm.model.tig00000944.45 no hits & (original description: no original description) 0.9126849481673218 6 evm.model.tig00001718.6 (at2g20420 : 210.0) ATP citrate lyase (ACL) family protein; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit (InterPro:IPR005809), Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 9337 Blast hits to 9333 proteins in 2108 species: Archae - 181; Bacteria - 4147; Metazoa - 466; Fungi - 228; Plants - 81; Viruses - 0; Other Eukaryotes - 4234 (source: NCBI BLink). & (q6k9n6|sucb_orysa : 209.0) Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, beta chain) (SCS-beta) - Oryza sativa (Rice) & (reliability: 420.0) & (original description: no original description) 0.9117906479324351 7 evm.model.tig00000388.13 no hits & (original description: no original description) 0.9091705292861093 17 evm.model.tig00020875.11 (at5g22300 : 273.0) encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway.; nitrilase 4 (NIT4); CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), Nitrilase/cyanide hydratase, conserved site (InterPro:IPR000132); BEST Arabidopsis thaliana protein match is: nitrilase 3 (TAIR:AT3G44320.1); Has 7653 Blast hits to 7575 proteins in 1747 species: Archae - 162; Bacteria - 5078; Metazoa - 407; Fungi - 539; Plants - 330; Viruses - 11; Other Eukaryotes - 1126 (source: NCBI BLink). & (q42965|nrl4_tobac : 271.0) Nitrilase 4 (EC 3.5.5.1) - Nicotiana tabacum (Common tobacco) & (reliability: 546.0) & (original description: no original description) 0.9088459462255641 19 evm.model.tig00000863.24 no hits & (original description: no original description) 0.9065189645140477 10 evm.model.tig00000319.25 (p17300|act7_orysa : 472.0) Actin-7 - Oryza sativa (Rice) & (at5g09810 : 470.0) Member of Actin gene family.Mutants are defective in germination and root growth.; actin 7 (ACT7); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, nucleolus, cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15241 Blast hits to 14839 proteins in 3047 species: Archae - 8; Bacteria - 21; Metazoa - 5732; Fungi - 5247; Plants - 1603; Viruses - 2; Other Eukaryotes - 2628 (source: NCBI BLink). & (reliability: 912.0) & (original description: no original description) 0.9049966572956933 11 evm.model.tig00021582.6 no hits & (original description: no original description) 0.9043171049924599 12 evm.model.tig00000219.59 no hits & (original description: no original description) 0.900287753157953 13 evm.model.tig00000310.42 (at4g32140 : 102.0) EamA-like transporter family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: EamA-like transporter family (TAIR:AT3G07080.1); Has 1581 Blast hits to 1581 proteins in 473 species: Archae - 40; Bacteria - 583; Metazoa - 277; Fungi - 235; Plants - 87; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.8994397176143737 14 evm.model.tig00000158.14 (at1g67820 : 123.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G30020.1); Has 6733 Blast hits to 6560 proteins in 362 species: Archae - 6; Bacteria - 120; Metazoa - 1758; Fungi - 815; Plants - 2713; Viruses - 9; Other Eukaryotes - 1312 (source: NCBI BLink). & (reliability: 246.0) & (original description: no original description) 0.8937219863962497 15 evm.model.tig00001443.2 (at5g06140 : 140.0) Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.; sorting nexin 1 (SNX1); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: in 7 processes; LOCATED IN: endosome, microsome, retromer complex, membrane, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2B (TAIR:AT5G07120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description) 0.8926795309427634 34 evm.model.tig00021464.28 no hits & (original description: no original description) 0.890717165011721 34 evm.model.tig00020912.25 no hits & (original description: no original description) 0.8880700746909544 35 evm.model.tig00020675.112 no hits & (original description: no original description) 0.8878702113199942 20 evm.model.tig00020538.8 no hits & (original description: no original description) 0.8865200604778539 70 evm.model.tig00000525.12 (p48480|pp11_acecl : 246.0) Serine/threonine-protein phosphatase PP1 isozyme 1 (EC 3.1.3.16) - Acetabularia cliftonii (Green alga) & (at4g11240 : 241.0) encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.; TOPP7; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 3 (TAIR:AT1G64040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 482.0) & (original description: no original description) 0.8857527709322172 86 evm.model.tig00000900.6 no hits & (original description: no original description) 0.8850543680114414 66 evm.model.tig00000142.8 (original description: no original description) 0.8848143064978068 88 evm.model.tig00021350.7 (at5g26740 : 102.0) Protein of unknown function (DUF300); LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT3G05940.1); Has 921 Blast hits to 913 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 193; Plants - 245; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.881126279372156 25 evm.model.tig00000498.80 (q9zsv1|parp1_maize : 162.0) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1) (ADPRT 1) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) - Zea mays (Maize) & (at2g31320 : 158.0) Abiotic Stress-inducible gene.; poly(ADP-ribose) polymerase 2 (PARP2); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity, NAD or NADH binding, DNA binding, zinc ion binding; INVOLVED IN: DNA repair, response to oxidative stress, response to abscisic acid stimulus, protein amino acid ADP-ribosylation, response to abiotic stimulus; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PADR1 (InterPro:IPR012982), Zinc finger, PARP-type (InterPro:IPR001510), WGR (InterPro:IPR008893), Poly(ADP-ribose) polymerase, regulatory domain (InterPro:IPR004102), NAD+ ADP-ribosyltransferase (InterPro:IPR008288), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (TAIR:AT5G22470.1); Has 1243 Blast hits to 1018 proteins in 163 species: Archae - 0; Bacteria - 14; Metazoa - 746; Fungi - 100; Plants - 173; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink). & (reliability: 316.0) & (original description: no original description) 0.8809692278729953 26 evm.model.tig00000808.7 no hits & (original description: no original description) 0.8809580691407918 27 evm.model.tig00020589.5 (at4g27690 : 370.0) vacuolar protein sorting 26B (VPS26B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26A (TAIR:AT5G53530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 740.0) & (original description: no original description) 0.8806294493036284 57 evm.model.tig00020830.5 (at1g15500 : 101.0) ATNTT2; FUNCTIONS IN: ATP:ADP antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: ADP/ATP carrier protein (InterPro:IPR004667); BEST Arabidopsis thaliana protein match is: nucleotide transporter 1 (TAIR:AT1G80300.1); Has 767 Blast hits to 762 proteins in 173 species: Archae - 0; Bacteria - 466; Metazoa - 8; Fungi - 28; Plants - 101; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink). & (o24381|tlc1_soltu : 94.7) Plastidic ATP/ADP-transporter - Solanum tuberosum (Potato) & (reliability: 202.0) & (original description: no original description) 0.8794353056969297 66 evm.model.tig00000498.6 (at1g65820 : 116.0) microsomal glutathione s-transferase, putative; CONTAINS InterPro DOMAIN/s: Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein (InterPro:IPR001129); Has 388 Blast hits to 388 proteins in 129 species: Archae - 0; Bacteria - 4; Metazoa - 195; Fungi - 88; Plants - 65; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description) 0.8793337961366748 31 evm.model.tig00001408.20 no hits & (original description: no original description) 0.8783201999512219 98 evm.model.tig00021127.30 no hits & (original description: no original description) 0.878209666747425 78 evm.model.tig00000944.51 no hits & (original description: no original description) 0.8777397870002451 42 evm.model.tig00001067.17 no hits & (original description: no original description) 0.8757750258109451 35 evm.model.tig00001086.22 (at2g17790 : 429.0) Encodes a protein with similarity to yeast VPS35 which encodes a component of the retromer involved in retrograde endosomal transport. Mutants partially suppress the loss of VTI11 function in Arabidopsis and restores gravitropism in the double mutant.; VPS35 homolog A (VPS35A); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35 homolog B (TAIR:AT1G75850.1); Has 618 Blast hits to 509 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 224; Plants - 73; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). & (reliability: 858.0) & (original description: no original description) 0.8755773167217339 56 evm.model.tig00020610.43 no hits & (original description: no original description) 0.8724414880635417 37 evm.model.tig00020909.41 no hits & (original description: no original description) 0.8715726409654795 39 evm.model.tig00020912.60 no hits & (original description: no original description) 0.8708572966073638 40 evm.model.tig00001537.11 no hits & (original description: no original description) 0.8707064026203923 41 evm.model.tig00000388.23 no hits & (original description: no original description) 0.8704597150371761 42 evm.model.tig00020780.23 (at5g17530 : 261.0) phosphoglucosamine mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, putative / glucose phosphomutase, putative (TAIR:AT1G70820.1). & (reliability: 522.0) & (original description: no original description) 0.8701045588240904 92 evm.model.tig00000444.17 (at1g79050 : 281.0) recA DNA recombination family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination/repair protein RecA, conserved site (InterPro:IPR020584), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 19704 Blast hits to 19632 proteins in 5647 species: Archae - 493; Bacteria - 14777; Metazoa - 222; Fungi - 191; Plants - 243; Viruses - 74; Other Eukaryotes - 3704 (source: NCBI BLink). & (reliability: 562.0) & (original description: no original description) 0.8695770580382498 92 evm.model.tig00020553.157 (at1g33680 : 104.0) KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 52223 Blast hits to 31714 proteins in 1554 species: Archae - 80; Bacteria - 6342; Metazoa - 24247; Fungi - 9116; Plants - 4309; Viruses - 323; Other Eukaryotes - 7806 (source: NCBI BLink). & (reliability: 196.4) & (original description: no original description) 0.8678248442227764 80 evm.model.tig00021070.108 (at2g38710 : 185.0) AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 370.0) & (original description: no original description) 0.867122484720761 54 evm.model.tig00020878.21 no hits & (original description: no original description) 0.8662340053250223 63 evm.model.tig00001525.17 no hits & (original description: no original description) 0.8661187333183643 53 evm.model.tig00021319.38 (at2g03120 : 185.0) homologous to Signal Peptide Peptidases (SPP), required for pollen development and pollen germination. No homozygotes could be recovered from a T-DNA insertion mutant.; signal peptide peptidase (SPP); FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: pollen germination, pollen development; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (TAIR:AT4G33410.1); Has 989 Blast hits to 959 proteins in 196 species: Archae - 4; Bacteria - 0; Metazoa - 468; Fungi - 136; Plants - 243; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). & (reliability: 370.0) & (original description: no original description) 0.8659464443745064 85 evm.model.tig00000806.47 (at4g39660 : 303.0) alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,; alanine:glyoxylate aminotransferase 2 (AGT2); FUNCTIONS IN: zinc ion binding, alanine-glyoxylate transaminase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: PYRIMIDINE 4 (TAIR:AT3G08860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 606.0) & (original description: no original description) 0.8648551989573136 78 evm.model.tig00000383.39 (at2g02560 : 617.0) Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.; cullin-associated and neddylation dissociated (CAND1); FUNCTIONS IN: binding; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, vegetative to reproductive phase transition of meristem; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), TATA-binding protein interacting (TIP20) (InterPro:IPR013932); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1234.0) & (original description: no original description) 0.8647972895880585 63 evm.model.tig00021680.25 (at5g67320 : 318.0) Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.; high expression of osmotically responsive genes 15 (HOS15); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 636.0) & (original description: no original description) 0.8646597579840293 87 evm.model.tig00000754.8 (at1g16320 : 89.7) Uncharacterized conserved protein (DUF2358); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT1G79510.2); Has 274 Blast hits to 274 proteins in 79 species: Archae - 0; Bacteria - 78; Metazoa - 80; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description) 0.8612470443294241 62 evm.model.tig00000254.82 (at1g63120 : 87.0) AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein.; RHOMBOID-like 2 (RBL2); CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 6 (TAIR:AT1G12750.3); Has 6856 Blast hits to 6855 proteins in 1947 species: Archae - 152; Bacteria - 4411; Metazoa - 521; Fungi - 179; Plants - 374; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description) 0.8597865499624641 64 evm.model.tig00000944.44 no hits & (original description: no original description) 0.8597852038067689 81 evm.model.tig00000402.8 no hits & (original description: no original description) 0.859318118731596 66 evm.model.tig00000042.121 no hits & (original description: no original description) 0.8592761002711099 67 evm.model.tig00022075.46 (at5g58290 : 470.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 462.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 940.0) & (original description: no original description) 0.8590797897946224 80 evm.model.tig00021038.83 "(at5g12840 : 105.0) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.; ""nuclear factor Y, subunit A1"" (NF-YA1); CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A9 (TAIR:AT3G20910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description)" 0.8585848494620192 70 evm.model.tig00020904.38 no hits & (original description: no original description) 0.8558723951251581 96 evm.model.tig00021037.50 no hits & (original description: no original description) 0.8553979842412835 90 evm.model.tig00021680.16 (at5g42970 : 409.0) encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.; CONSTITUTIVE PHOTOMORPHOGENIC 8 (COP8); FUNCTIONS IN: protein binding; INVOLVED IN: cullin deneddylation, negative regulation of photomorphogenesis, G2 phase of mitotic cell cycle, photomorphogenesis; LOCATED IN: signalosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase subunit 5B (TAIR:AT5G64760.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 818.0) & (original description: no original description) 0.8535926792051318 86 evm.model.tig00001095.12 no hits & (original description: no original description) 0.8533547664875806 87 evm.model.tig00001085.8 no hits & (original description: no original description) 0.8518267669706793 90 evm.model.tig00000478.39 no hits & (original description: no original description) 0.8508562218123302 92 evm.model.tig00021608.5 (at3g61140 : 479.0) Represses photomorphogenesis and induces skotomorphogenesis in the dark. Component of the nuclear-localized COP9 complex. Mutants display striking purple coloration due to anthocyanin accumulation in their cotyledons, first become defective during embryogenesis and exhibit limited seedling development.; FUSCA 6 (FUS6); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), 26S proteasome, regulatory subunit Rpn7 (InterPro:IPR019585); BEST Arabidopsis thaliana protein match is: COP9 signalosome complex-related / CSN complex-related (TAIR:AT3G12850.1); Has 1199 Blast hits to 1198 proteins in 240 species: Archae - 0; Bacteria - 0; Metazoa - 515; Fungi - 231; Plants - 316; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink). & (reliability: 958.0) & (original description: no original description) 0.8497200301167355 95 evm.model.tig00020904.94 (at2g37250 : 116.0) encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growth; adenosine kinase (ADK); CONTAINS InterPro DOMAIN/s: Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G39270.1); Has 14783 Blast hits to 14646 proteins in 5115 species: Archae - 103; Bacteria - 9935; Metazoa - 1161; Fungi - 479; Plants - 468; Viruses - 0; Other Eukaryotes - 2637 (source: NCBI BLink). & (q8hsw1|kadc_soltu : 110.0) Adenylate kinase, chloroplast precursor (EC 2.7.4.3) (ATP-AMP transphosphorylase) - Solanum tuberosum (Potato) & (reliability: 232.0) & (original description: no original description) 0.8493964383321041 96 evm.model.tig00021435.14 (at2g26990 : 299.0) Represses photomorphogenesis and induces skotomorphogenesis in the dark.; FUSCA 12 (FUS12); INVOLVED IN: cullin deneddylation, photomorphogenesis, protein catabolic process; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: non-ATPase subunit 9 (TAIR:AT1G29150.1); Has 881 Blast hits to 877 proteins in 239 species: Archae - 2; Bacteria - 9; Metazoa - 323; Fungi - 235; Plants - 190; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 598.0) & (original description: no original description) 0.8485202795421993 100