Sequence Description Alias PCC hrr evm.model.tig00021463.25 no hits & (original description: no original description) 0.9746254346320741 1 evm.model.tig00020848.59 (original description: no original description) 0.9725282847772252 5 evm.model.tig00021319.55 (p93107|pf20_chlre : 563.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (at5g67320 : 133.0) Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.; high expression of osmotically responsive genes 15 (HOS15); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description) 0.9665012283001357 5 evm.model.tig00020918.14 no hits & (original description: no original description) 0.9661261804363318 4 evm.model.tig00000792.69 no hits & (original description: no original description) 0.9651864819864223 5 evm.model.tig00020544.1 no hits & (original description: no original description) 0.96161908292051 6 evm.model.tig00021234.21 no hits & (original description: no original description) 0.9614539250091453 8 evm.model.tig00020801.87 (at2g20050 : 117.0) protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, protein amino acid dephosphorylation, regulation of protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), cAMP/cGMP-dependent protein kinase (InterPro:IPR002373), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein phosphatase 2C-related (InterPro:IPR001932), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein kinase, catalytic domain (InterPro:IPR000719), Cyclic nucleotide-binding-like (InterPro:IPR018490), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G06270.1). & (reliability: 234.0) & (original description: no original description) 0.959031795776508 8 evm.model.tig00021070.72 (at1g21980 : 125.0) Type I phosphatidylinositol-4-phosphate 5-kinase. Preferentially phosphorylates PtdIns4P. Induced by water stress and abscisic acid in Arabidopsis thaliana. Expressed in procambial cells of leaves, flowers and roots. A N-terminal Membrane Occupation and Recognition Nexus (MORN)affects enzyme activity and distribution.; phosphatidylinositol-4-phosphate 5-kinase 1 (PIP5K1); CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase 2 (TAIR:AT1G77740.1); Has 28574 Blast hits to 7954 proteins in 630 species: Archae - 0; Bacteria - 3995; Metazoa - 4425; Fungi - 453; Plants - 2526; Viruses - 0; Other Eukaryotes - 17175 (source: NCBI BLink). & (q6ex42|pi5k1_orysa : 115.0) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC 2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) - Oryza sativa (Rice) & (reliability: 250.0) & (original description: no original description) 0.9584474025754632 9 evm.model.tig00020629.86 no hits & (original description: no original description) 0.9579457322043142 10 evm.model.tig00020996.11 no hits & (original description: no original description) 0.9553013591580757 11 evm.model.tig00001371.15 (at5g41790 : 106.0) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9m7j4|mfp1_tobac : 82.4) MAR-binding filament-like protein 1-1 - Nicotiana tabacum (Common tobacco) & (reliability: 212.0) & (original description: no original description) 0.9552685571802282 12 evm.model.tig00000852.47 no hits & (original description: no original description) 0.9546389914731699 13 evm.model.tig00000219.14 no hits & (original description: no original description) 0.9542467736006833 14 evm.model.tig00001095.23 no hits & (original description: no original description) 0.9541398119034283 15 evm.model.tig00020960.49 no hits & (original description: no original description) 0.9527973805837655 16 evm.model.tig00000980.2 (at2g18540 : 94.0) RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G36700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 188.0) & (original description: no original description) 0.9505997813863283 17 evm.model.tig00020675.88 (at1g02170 : 211.0) Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain; metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink). & (reliability: 422.0) & (original description: no original description) 0.9459902799123892 18 evm.model.tig00000970.35 no hits & (original description: no original description) 0.9454489836656859 19 evm.model.tig00000217.27 no hits & (original description: no original description) 0.9452519131873519 20 evm.model.tig00000076.91 no hits & (original description: no original description) 0.9440830560481537 21 evm.model.tig00000704.46 (at3g18130 : 83.6) Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B.; receptor for activated C kinase 1C (RACK1C_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1B (TAIR:AT1G48630.1); Has 88582 Blast hits to 37057 proteins in 965 species: Archae - 74; Bacteria - 10338; Metazoa - 34853; Fungi - 20136; Plants - 11319; Viruses - 6; Other Eukaryotes - 11856 (source: NCBI BLink). & (o24076|gblp_medsa : 82.0) Guanine nucleotide-binding protein subunit beta-like protein - Medicago sativa (Alfalfa) & (reliability: 167.2) & (original description: no original description) 0.9431086348131994 22 evm.model.tig00020723.68 no hits & (original description: no original description) 0.9427141944714322 23 evm.model.tig00021589.18 (at2g35890 : 201.0) member of Calcium Dependent Protein Kinase; calcium-dependent protein kinase 25 (CPK25); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calmodulin-domain protein kinase cdpk isoform 2 (TAIR:AT3G10660.1); Has 110743 Blast hits to 108941 proteins in 2972 species: Archae - 173; Bacteria - 14302; Metazoa - 39605; Fungi - 12638; Plants - 23064; Viruses - 489; Other Eukaryotes - 20472 (source: NCBI BLink). & (p53683|cdpk2_orysa : 180.0) Calcium-dependent protein kinase, isoform 2 (EC 2.7.11.1) (CDPK 2) - Oryza sativa (Rice) & (reliability: 402.0) & (original description: no original description) 0.9377698765303932 24 evm.model.tig00000718.72 no hits & (original description: no original description) 0.9371111299799831 33 evm.model.tig00021108.23 no hits & (original description: no original description) 0.9340953979104789 26 evm.model.tig00001154.26 (at2g41100 : 82.0) encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.; TOUCH 3 (TCH3); CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3). & (reliability: 164.0) & (original description: no original description) 0.9337901846404796 37 evm.model.tig00001030.35 no hits & (original description: no original description) 0.9326529685247417 28 evm.model.tig00020848.28 (at1g17410 : 112.0) Nucleoside diphosphate kinase family protein; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: UTP biosynthetic process, GTP biosynthetic process, CTP biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1). & (q01402|ndk2_spiol : 89.7) Nucleoside diphosphate kinase 2, chloroplast precursor (EC 2.7.4.6) (Nucleoside diphosphate kinase II) (NDK II) (NDP kinase II) (NDPK II) [Contains: Nucleoside diphosphate kinase 2 high-molecular-weight; Nucleoside diphosphate kinase 2 & (reliability: 224.0) & (original description: no original description) 0.9306214855954762 29 evm.model.tig00000053.14 (at5g23580 : 246.0) unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+; calmodulin-like domain protein kinase 9 (CDPK9); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 2 (TAIR:AT1G35670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p28583|cdpk_soybn : 237.0) Calcium-dependent protein kinase SK5 (EC 2.7.11.1) (CDPK) - Glycine max (Soybean) & (reliability: 492.0) & (original description: no original description) 0.9302265714567913 30 evm.model.tig00020510.42 (p46870|klp1_chlre : 416.0) Kinesin-like protein KLP1 - Chlamydomonas reinhardtii & (at2g28620 : 243.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45850.2); Has 49289 Blast hits to 35260 proteins in 1950 species: Archae - 481; Bacteria - 7561; Metazoa - 22029; Fungi - 4505; Plants - 3473; Viruses - 125; Other Eukaryotes - 11115 (source: NCBI BLink). & (reliability: 486.0) & (original description: no original description) 0.9297776971601833 31 evm.model.tig00021122.12 no hits & (original description: no original description) 0.9287542774002201 32 evm.model.tig00000836.24 no hits & (original description: no original description) 0.9279054200228053 33 evm.model.tig00000863.46 (at3g12300 : 295.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). & (reliability: 590.0) & (original description: no original description) 0.9262942363628316 34 evm.model.tig00001107.5 no hits & (original description: no original description) 0.924566650741562 35 evm.model.tig00000093.9 no hits & (original description: no original description) 0.9234005226312747 36 evm.model.tig00020934.50 no hits & (original description: no original description) 0.9227118275799678 37 evm.model.tig00000944.20 no hits & (original description: no original description) 0.9204026946637522 42 evm.model.tig00000692.22 no hits & (original description: no original description) 0.9198473122784351 39 evm.model.tig00020780.20 no hits & (original description: no original description) 0.9185642978656863 40 evm.model.tig00021357.32 no hits & (original description: no original description) 0.9182065176595927 41 evm.model.tig00020848.54 no hits & (original description: no original description) 0.9151872980054379 42 evm.model.tig00001229.13 no hits & (original description: no original description) 0.9147417577026868 43 evm.model.tig00000203.31 no hits & (original description: no original description) 0.9142649154792998 44 evm.model.tig00020964.22 (original description: no original description) 0.9118036100406461 45 evm.model.tig00001003.41 no hits & (original description: no original description) 0.9107545136292439 46 evm.model.tig00000319.27 no hits & (original description: no original description) 0.9107233929720582 47 evm.model.tig00000789.10 (at3g07960 : 125.0) Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol- 4-phosphate 5-kinase 5 (TAIR:AT2G41210.1); Has 28977 Blast hits to 7880 proteins in 615 species: Archae - 0; Bacteria - 4479; Metazoa - 4240; Fungi - 468; Plants - 2497; Viruses - 0; Other Eukaryotes - 17293 (source: NCBI BLink). & (q6ex42|pi5k1_orysa : 86.7) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC 2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) - Oryza sativa (Rice) & (reliability: 250.0) & (original description: no original description) 0.9101093335396038 48 evm.model.tig00000241.144 (original description: no original description) 0.91010515461494 60 evm.model.tig00000615.26 (at4g35740 : 207.0) Encodes RECQ3, an ATP-dependent helicase.; RecQl3; FUNCTIONS IN: ATP binding, ATP-dependent helicase activity; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 28158 Blast hits to 28089 proteins in 2765 species: Archae - 286; Bacteria - 16813; Metazoa - 3341; Fungi - 2669; Plants - 1491; Viruses - 10; Other Eukaryotes - 3548 (source: NCBI BLink). & (reliability: 414.0) & (original description: no original description) 0.9098768489871233 50 evm.model.tig00001049.8 (q43772|ugpa_horvu : 296.0) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) - Hordeum vulgare (Barley) & (at5g17310 : 289.0) UDP-glucose pyrophosphorylase 2 (UGP2); FUNCTIONS IN: UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: response to cadmium ion, callose deposition in cell wall, response to salt stress, metabolic process, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase, subgroup (InterPro:IPR016267), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UDP-GLUCOSE PYROPHOSPHORYLASE 1 (TAIR:AT3G03250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 578.0) & (original description: no original description) 0.9096058912901178 51 evm.model.tig00000863.16 (at5g41790 : 116.0) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9m7j4|mfp1_tobac : 90.5) MAR-binding filament-like protein 1-1 - Nicotiana tabacum (Common tobacco) & (reliability: 232.0) & (original description: no original description) 0.9095468522810057 52 evm.model.tig00021072.33 no hits & (original description: no original description) 0.9073586299076386 53 evm.model.tig00021017.12 no hits & (original description: no original description) 0.9046945095998736 54 evm.model.tig00020848.39 (at5g40530 : 206.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Methyltransferase-related (InterPro:IPR007823); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q41651|cypb_vicfa : 92.0) Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) (CYP B) - Vicia faba (Broad bean) & (reliability: 412.0) & (original description: no original description) 0.9035989939480374 82 evm.model.tig00021339.29 (at5g63440 : 93.2) Protein of unknown function (DUF167); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF167) (TAIR:AT1G49170.1); Has 732 Blast hits to 732 proteins in 300 species: Archae - 13; Bacteria - 428; Metazoa - 192; Fungi - 6; Plants - 66; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). & (reliability: 186.4) & (original description: no original description) 0.903535761090497 56 evm.model.tig00001164.22 (q39584|dyl3_chlre : 163.0) Dynein 18 kDa light chain, flagellar outer arm - Chlamydomonas reinhardtii & (at2g27030 : 95.5) encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.; calmodulin 5 (CAM5); FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 3 (TAIR:AT3G56800.1); Has 36011 Blast hits to 23475 proteins in 1766 species: Archae - 4; Bacteria - 234; Metazoa - 15635; Fungi - 7487; Plants - 7311; Viruses - 0; Other Eukaryotes - 5340 (source: NCBI BLink). & (reliability: 191.0) & (original description: no original description) 0.9032971140662028 57 evm.model.tig00001229.7 no hits & (original description: no original description) 0.9015960829745896 65 evm.model.tig00021612.11 no hits & (original description: no original description) 0.9009621843454986 70 evm.model.tig00021464.25 no hits & (original description: no original description) 0.9003237556031526 75 evm.model.tig00000441.26 no hits & (original description: no original description) 0.8999616196051021 61 evm.model.tig00000808.11 no hits & (original description: no original description) 0.899443617556169 62 evm.model.tig00001466.14 no hits & (original description: no original description) 0.8993101973028961 63 evm.model.tig00000037.36 no hits & (original description: no original description) 0.89914187221046 64 evm.model.tig00001206.17 no hits & (original description: no original description) 0.8980128806530423 65 evm.model.tig00000042.24 no hits & (original description: no original description) 0.8967403138709108 78 evm.model.tig00000704.22 no hits & (original description: no original description) 0.8963238764360776 67 evm.model.tig00001093.3 no hits & (original description: no original description) 0.8957024072261804 68 evm.model.tig00000350.35 no hits & (original description: no original description) 0.895636346935359 69 evm.model.tig00022075.56 no hits & (original description: no original description) 0.8954937786196664 70 evm.model.tig00021464.30 (at4g14965 : 102.0) membrane-associated progesterone binding protein 4 (MAPR4); FUNCTIONS IN: heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane-associated progesterone binding protein 2 (TAIR:AT2G24940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.8953918493688576 71 evm.model.tig00021352.63 no hits & (original description: no original description) 0.8946609245257946 74 evm.model.tig00020830.104 no hits & (original description: no original description) 0.8943251531139004 95 evm.model.tig00020780.61 no hits & (original description: no original description) 0.8942560748135225 74 evm.model.tig00000769.26 no hits & (original description: no original description) 0.8940953599329703 75 evm.model.tig00020816.29 no hits & (original description: no original description) 0.8938676987457479 97 evm.model.tig00020961.56 no hits & (original description: no original description) 0.8935317163604289 77 evm.model.tig00021616.9 no hits & (original description: no original description) 0.8934785275702346 79 evm.model.tig00000704.47 no hits & (original description: no original description) 0.8933189336118423 79 evm.model.tig00000789.40 no hits & (original description: no original description) 0.8924691320752405 81 evm.model.tig00020911.12 no hits & (original description: no original description) 0.8924513973275415 99 evm.model.tig00020554.139 (at4g29860 : 134.0) Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development.; EMBRYO DEFECTIVE 2757 (EMB2757); FUNCTIONS IN: nucleotide binding; INVOLVED IN: acquisition of desiccation tolerance, embryo development, embryo development ending in seed dormancy; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: stem, rosette leaf, fruit, root, cultured cell; EXPRESSED DURING: F mature embryo stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 24053 Blast hits to 12842 proteins in 620 species: Archae - 42; Bacteria - 6408; Metazoa - 6694; Fungi - 5230; Plants - 2600; Viruses - 0; Other Eukaryotes - 3079 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description) 0.8922588678125771 83 evm.model.tig00000704.39 (at5g10010 : 125.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description) 0.8919982595032105 84 evm.model.tig00021012.35 no hits & (original description: no original description) 0.8917396554050894 85 evm.model.tig00001408.22 no hits & (original description: no original description) 0.8911190327236674 86 evm.model.tig00020710.125 no hits & (original description: no original description) 0.8893978887318669 88 evm.model.tig00000076.107 no hits & (original description: no original description) 0.8885894764571345 89 evm.model.tig00001542.19 no hits & (original description: no original description) 0.8885885363864879 94 evm.model.tig00000128.6 no hits & (original description: no original description) 0.8880055088082857 95 evm.model.tig00020848.19 (at1g60620 : 348.0) RNA polymerase I subunit 43 (RPAC43); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT1G60850.1); Has 1342 Blast hits to 1342 proteins in 354 species: Archae - 247; Bacteria - 1; Metazoa - 281; Fungi - 345; Plants - 107; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink). & (reliability: 696.0) & (original description: no original description) 0.8879572372668622 92 evm.model.tig00021293.16 no hits & (original description: no original description) 0.8873227296331812 93 evm.model.tig00000350.21 no hits & (original description: no original description) 0.8871670480035351 94 evm.model.tig00000754.29 (p31022|rab7_pea : 311.0) Ras-related protein Rab7 - Pisum sativum (Garden pea) & (at3g16100 : 303.0) RAB GTPase homolog G3C (RABG3c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3D (TAIR:AT1G52280.1); Has 25544 Blast hits to 25522 proteins in 774 species: Archae - 27; Bacteria - 219; Metazoa - 13379; Fungi - 3488; Plants - 2822; Viruses - 20; Other Eukaryotes - 5589 (source: NCBI BLink). & (reliability: 606.0) & (original description: no original description) 0.8869607433139026 95 evm.model.tig00021127.35 no hits & (original description: no original description) 0.8862648218062054 97 evm.model.tig00000829.22 (at5g26570 : 86.7) chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.; PHOSPHOGLUCAN WATER DIKINASE (PWD); FUNCTIONS IN: carbohydrate kinase activity, catalytic activity, phosphoglucan, water dikinase activity; INVOLVED IN: protein amino acid autophosphorylation, carbohydrate metabolic process, starch metabolic process, starch catabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044); BEST Arabidopsis thaliana protein match is: Pyruvate phosphate dikinase, PEP/pyruvate binding domain (TAIR:AT1G10760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q2qtc2|pwd_orysa : 83.6) Phosphoglucan, water dikinase, chloroplast precursor (EC 2.7.9.5) - Oryza sativa (Rice) & (reliability: 173.4) & (original description: no original description) 0.8849804455488891 98 evm.model.tig00000692.26 no hits & (original description: no original description) 0.8844136986705441 99