Sequence Description Alias PCC hrr evm.model.tig00001371.15 (at5g41790 : 106.0) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9m7j4|mfp1_tobac : 82.4) MAR-binding filament-like protein 1-1 - Nicotiana tabacum (Common tobacco) & (reliability: 212.0) & (original description: no original description) 0.9462381007078451 8 evm.model.tig00020780.61 no hits & (original description: no original description) 0.9257608274821713 23 evm.model.tig00020964.22 (original description: no original description) 0.9250045524623071 17 evm.model.tig00020537.8 no hits & (original description: no original description) 0.9231475879014172 7 evm.model.tig00001229.7 no hits & (original description: no original description) 0.9218031514836414 32 evm.model.tig00020848.39 (at5g40530 : 206.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Methyltransferase-related (InterPro:IPR007823); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q41651|cypb_vicfa : 92.0) Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) (CYP B) - Vicia faba (Broad bean) & (reliability: 412.0) & (original description: no original description) 0.9194638533678631 44 evm.model.tig00021522.3 (at5g49310 : 83.6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.; importin alpha isoform 5 (IMPA-5); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.906361384805396 77 evm.model.tig00001154.26 (at2g41100 : 82.0) encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.; TOUCH 3 (TCH3); CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3). & (reliability: 164.0) & (original description: no original description) 0.9048764383285127 84 evm.model.tig00021234.21 no hits & (original description: no original description) 0.9048229410631022 43 evm.model.tig00020848.59 (original description: no original description) 0.9003262082572598 63 evm.model.tig00000615.26 (at4g35740 : 207.0) Encodes RECQ3, an ATP-dependent helicase.; RecQl3; FUNCTIONS IN: ATP binding, ATP-dependent helicase activity; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 28158 Blast hits to 28089 proteins in 2765 species: Archae - 286; Bacteria - 16813; Metazoa - 3341; Fungi - 2669; Plants - 1491; Viruses - 10; Other Eukaryotes - 3548 (source: NCBI BLink). & (reliability: 414.0) & (original description: no original description) 0.8931353091641139 41 evm.model.tig00020918.14 no hits & (original description: no original description) 0.8915035548950199 60 evm.model.tig00021350.34 no hits & (original description: no original description) 0.8915031933442656 64 evm.model.tig00021319.55 (p93107|pf20_chlre : 563.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (at5g67320 : 133.0) Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.; high expression of osmotically responsive genes 15 (HOS15); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description) 0.8887418609174035 91 evm.model.tig00000042.52 no hits & (original description: no original description) 0.8884003158482918 83 evm.model.tig00000215.127 no hits & (original description: no original description) 0.8873249976586709 73 evm.model.tig00000219.14 no hits & (original description: no original description) 0.8872300049735089 89 evm.model.tig00021589.2 no hits & (original description: no original description) 0.8870121114996129 92 evm.model.tig00020943.30 no hits & (original description: no original description) 0.8866096273855704 23 evm.model.tig00000704.36 (at5g10010 : 115.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description) 0.8835992298151188 26 evm.model.tig00000144.173 no hits & (original description: no original description) 0.8791161183996771 38 evm.model.tig00021119.8 no hits & (original description: no original description) 0.872893595729207 45 evm.model.tig00021612.56 no hits & (original description: no original description) 0.8726273133180734 38 evm.model.tig00020544.2 no hits & (original description: no original description) 0.8678076454632901 38 evm.model.tig00001095.23 no hits & (original description: no original description) 0.8674023494782426 61 evm.model.tig00000863.16 (at5g41790 : 116.0) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9m7j4|mfp1_tobac : 90.5) MAR-binding filament-like protein 1-1 - Nicotiana tabacum (Common tobacco) & (reliability: 232.0) & (original description: no original description) 0.8669674140792872 64 evm.model.tig00021017.42 no hits & (original description: no original description) 0.8665845615934716 43 evm.model.tig00021433.2 (at3g23890 : 475.0) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.; topoisomerase II (TOPII); CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, subunit A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta (InterPro:IPR013759), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase II, eukaryotic-type (InterPro:IPR001154), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o24308|top2_pea : 456.0) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II) (PsTopII) - Pisum sativum (Garden pea) & (reliability: 950.0) & (original description: no original description) 0.8635428650900677 48 evm.model.tig00022075.56 no hits & (original description: no original description) 0.863054280732865 74 evm.model.tig00021357.32 no hits & (original description: no original description) 0.8604685200955825 77 evm.model.tig00000350.21 no hits & (original description: no original description) 0.8529673633339471 81 evm.model.tig00020684.7 no hits & (original description: no original description) 0.85138805486198 69 evm.model.tig00021122.12 no hits & (original description: no original description) 0.8510062401227756 79 evm.model.tig00000403.30 no hits & (original description: no original description) 0.8491701273274105 63 evm.model.tig00020614.41 no hits & (original description: no original description) 0.8484507530414183 94 evm.model.tig00020780.20 no hits & (original description: no original description) 0.8479014784621802 87 evm.model.tig00000037.35 no hits & (original description: no original description) 0.8459995862602077 94 evm.model.tig00020531.45 no hits & (original description: no original description) 0.8458711718174642 71 evm.model.tig00000073.38 no hits & (original description: no original description) 0.8415174101408355 79