Sequence Description Alias PCC hrr evm.model.tig00000093.107 no hits & (original description: no original description) 0.9390234037982018 1 evm.model.tig00001408.5 no hits & (original description: no original description) 0.9327603017201187 2 evm.model.tig00001371.20 (at3g01480 : 194.0) Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.; cyclophilin 38 (CYP38); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, photosystem II assembly, photosystem II stabilization, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G15520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o49939|tlp40_spiol : 193.0) Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (EC 5.2.1.8) (40 kDa thylakoid lumen PPIase) (40 kDa thylakoid lumen rotamase) - Spinacia oleracea (Spinach) & (reliability: 388.0) & (original description: no original description) 0.9288957456164343 3 evm.model.tig00020944.21 (p12359|psbo_spiol : 228.0) Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) - Spinacia oleracea (Spinach) & (at3g50820 : 213.0) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO proteins are encoded by two genes: <i>psbO1</i> and <i>psbO2</i>. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII.; photosystem II subunit O-2 (PSBO2); FUNCTIONS IN: oxygen evolving activity, poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, photoinhibition, photosystem II assembly, photosystem II stabilization, regulation of protein amino acid dephosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilising protein PsbO (InterPro:IPR002628); BEST Arabidopsis thaliana protein match is: PS II oxygen-evolving complex 1 (TAIR:AT5G66570.1); Has 534 Blast hits to 532 proteins in 148 species: Archae - 0; Bacteria - 144; Metazoa - 1; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink). & (reliability: 426.0) & (original description: no original description) 0.9149885044842562 4 evm.model.tig00020563.189 no hits & (original description: no original description) 0.9131493641604084 5 evm.model.tig00000737.19 (at2g23840 : 93.6) HNH endonuclease; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); Has 4176 Blast hits to 4176 proteins in 656 species: Archae - 6; Bacteria - 1679; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 29; Other Eukaryotes - 2425 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description) 0.9105115125359345 7 evm.model.tig00001017.5 (at5g57040 : 91.3) Lactoylglutathione lyase / glyoxalase I family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G80160.1); Has 1348 Blast hits to 1348 proteins in 501 species: Archae - 0; Bacteria - 1093; Metazoa - 6; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). & (reliability: 182.6) & (original description: no original description) 0.9090901549298903 7 evm.model.tig00001071.8 no hits & (original description: no original description) 0.899572355468611 8 evm.model.tig00021494.27 no hits & (original description: no original description) 0.8974526362625478 9 evm.model.tig00000269.114 no hits & (original description: no original description) 0.8876914913158168 10 evm.model.tig00001636.8 no hits & (original description: no original description) 0.8839859548515482 11 evm.model.tig00021493.18 no hits & (original description: no original description) 0.8789808397082227 12 evm.model.tig00021537.50 no hits & (original description: no original description) 0.873168353031965 13 evm.model.tig00020675.34 no hits & (original description: no original description) 0.8690275214294281 14 evm.model.tig00021537.49 no hits & (original description: no original description) 0.8679250477224774 16 evm.model.tig00000912.32 no hits & (original description: no original description) 0.8642568922182213 16 evm.model.tig00000076.154 no hits & (original description: no original description) 0.8585138576212805 17 evm.model.tig00021178.3 no hits & (original description: no original description) 0.8580353040758637 18 evm.model.tig00020912.35 no hits & (original description: no original description) 0.8557722343502998 19 evm.model.tig00021015.9 no hits & (original description: no original description) 0.8549658504207123 20 evm.model.tig00020780.3 (at5g23140 : 250.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear-encoded CLP protease P7 (NCLPP7); FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 150.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 500.0) & (original description: no original description) 0.8546491663122779 21 evm.model.tig00020571.11 (at4g10790 : 135.0) UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), UBX (InterPro:IPR001012); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G23040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description) 0.8509669975602739 22 evm.model.tig00001253.4 (at2g26670 : 219.0) Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast.; REVERSAL OF THE DET PHENOTYPE 4 (TED4); FUNCTIONS IN: heme oxygenase (decyclizing) activity, heme binding; INVOLVED IN: regulation of meristem growth, heme oxidation, red, far-red light phototransduction, chloroplast-nucleus signaling pathway, phytochromobilin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), Haem oxygenase-like (InterPro:IPR016053); BEST Arabidopsis thaliana protein match is: heme oxygenase 3 (TAIR:AT1G69720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 438.0) & (original description: no original description) 0.8504555744563834 23 evm.model.tig00020614.70 no hits & (original description: no original description) 0.8479674925772276 24 evm.model.tig00021494.17 no hits & (original description: no original description) 0.847083093363434 25 evm.model.tig00020909.11 (at4g17050 : 129.0) Encodes a protein with ureidoglycine aminohydrolase activity.; ureidoglycine aminohydrolase (UGLYAH); FUNCTIONS IN: ureidoglycine aminohydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: allantoin catabolic process, regulation of transcription; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin 2, conserved barrel (InterPro:IPR013096), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description) 0.8464270687751277 26 evm.model.tig00021234.42 no hits & (original description: no original description) 0.8454873968304693 30 evm.model.tig00021318.69 no hits & (original description: no original description) 0.8450141145387604 43 evm.model.tig00000219.34 no hits & (original description: no original description) 0.8432131812225028 29 evm.model.tig00001224.26 no hits & (original description: no original description) 0.8419954541887986 30 evm.model.tig00001265.14 no hits & (original description: no original description) 0.838644026117533 31 evm.model.tig00020961.15 no hits & (original description: no original description) 0.8365184929787757 32 evm.model.tig00020603.30 (at3g26070 : 118.0) Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26080.1); Has 483 Blast hits to 479 proteins in 86 species: Archae - 0; Bacteria - 99; Metazoa - 0; Fungi - 0; Plants - 334; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). & (reliability: 236.0) & (original description: no original description) 0.8354843173300507 33 evm.model.tig00021682.6 no hits & (original description: no original description) 0.8293677373843161 65 evm.model.tig00000367.31 no hits & (original description: no original description) 0.8293077109945862 40 evm.model.tig00000383.34 no hits & (original description: no original description) 0.8276696778229694 36 evm.model.tig00020904.102 no hits & (original description: no original description) 0.826116444257849 52 evm.model.tig00001466.3 no hits & (original description: no original description) 0.8259036493313915 38 evm.model.tig00020830.26 no hits & (original description: no original description) 0.822830481999204 39 evm.model.tig00000219.35 no hits & (original description: no original description) 0.8228176810605354 40 evm.model.tig00020703.42 no hits & (original description: no original description) 0.8216654446623726 52 evm.model.tig00001299.6 no hits & (original description: no original description) 0.8212636096451666 42 evm.model.tig00020941.49 (at2g27680 : 214.0) NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G06690.1); Has 12729 Blast hits to 12722 proteins in 1987 species: Archae - 303; Bacteria - 10047; Metazoa - 110; Fungi - 525; Plants - 450; Viruses - 0; Other Eukaryotes - 1294 (source: NCBI BLink). & (reliability: 428.0) & (original description: no original description) 0.8209827113677243 43 evm.model.tig00000093.54 (at2g45990 : 126.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 252.0) & (original description: no original description) 0.8194413051130934 44 evm.model.tig00001071.7 no hits & (original description: no original description) 0.8188336578592181 45 evm.model.tig00000923.6 (at3g26060 : 158.0) encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus; ATPRX Q; FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1). & (reliability: 316.0) & (original description: no original description) 0.8165241405187331 46 evm.model.tig00001086.30 (at1g07030 : 101.0) Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G30160.1); Has 27351 Blast hits to 14015 proteins in 457 species: Archae - 0; Bacteria - 6; Metazoa - 11451; Fungi - 7735; Plants - 5292; Viruses - 0; Other Eukaryotes - 2867 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description) 0.8154916138629934 47 evm.model.tig00001669.8 no hits & (original description: no original description) 0.8150695171785315 55 evm.model.tig00000144.61 (at5g05740 : 220.0) S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442ñ454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171ñ179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.; ethylene-dependent gravitropism-deficient and yellow-green-like 2 (EGY2); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915); BEST Arabidopsis thaliana protein match is: Peptidase M50 family protein (TAIR:AT5G35220.1). & (reliability: 440.0) & (original description: no original description) 0.8150433059626225 50 evm.model.tig00021435.53 no hits & (original description: no original description) 0.8114472834619386 50 evm.model.tig00020553.69 no hits & (original description: no original description) 0.8106822474726011 51 evm.model.tig00000215.61 no hits & (original description: no original description) 0.8099411171172528 73 evm.model.tig00000204.107 no hits & (original description: no original description) 0.8091592303620246 54 evm.model.tig00021314.20 no hits & (original description: no original description) 0.8088524429973996 55 evm.model.tig00000093.145 no hits & (original description: no original description) 0.8064658938996222 86 evm.model.tig00020710.110 no hits & (original description: no original description) 0.8061062131373566 57 evm.model.tig00021339.24 no hits & (original description: no original description) 0.8055895306596365 58 evm.model.tig00000939.10 no hits & (original description: no original description) 0.804795860637471 59 evm.model.tig00020703.41 no hits & (original description: no original description) 0.8046234778071452 76 evm.model.tig00001388.10 no hits & (original description: no original description) 0.804275770936868 75 evm.model.tig00000227.39 (at4g23430 : 103.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: chloroplast, chloroplast inner membrane; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G23420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q41578|pora_wheat : 82.0) Protochlorophyllide reductase A, chloroplast precursor (EC 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) - Triticum aestivum (Wheat) & (reliability: 206.0) & (original description: no original description) 0.8025893609187905 62 evm.model.tig00021179.43 (at5g58200 : 165.0) Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843). & (reliability: 330.0) & (original description: no original description) 0.8007179914650963 63 evm.model.tig00000640.2 no hits & (original description: no original description) 0.8006754162419858 83 evm.model.tig00000147.21 no hits & (original description: no original description) 0.800139701986353 65 evm.model.tig00000144.189 no hits & (original description: no original description) 0.7997111948699084 66 evm.model.tig00000841.9 (at4g36760 : 421.0) Arabidopsis aminopeptidase P1; aminopeptidase P1 (APP1); FUNCTIONS IN: aminopeptidase activity, N-1-naphthylphthalamic acid binding; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site (InterPro:IPR001131), Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT3G05350.1); Has 10398 Blast hits to 10335 proteins in 2401 species: Archae - 277; Bacteria - 6310; Metazoa - 362; Fungi - 246; Plants - 146; Viruses - 0; Other Eukaryotes - 3057 (source: NCBI BLink). & (reliability: 842.0) & (original description: no original description) 0.7989572671420182 67 evm.model.tig00000478.14 no hits & (original description: no original description) 0.7965405479991511 68 evm.model.tig00000093.39 no hits & (original description: no original description) 0.7951551463690641 69 evm.model.tig00000711.40 no hits & (original description: no original description) 0.7943848381384778 70 evm.model.tig00020703.43 no hits & (original description: no original description) 0.7922617955354326 92 evm.model.tig00021312.44 no hits & (original description: no original description) 0.7901408832364689 73 evm.model.tig00021357.23 no hits & (original description: no original description) 0.7891809878395538 85 evm.model.tig00021428.30 no hits & (original description: no original description) 0.7875294441570594 99 evm.model.tig00020563.171 (at3g27110 : 254.0) Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 2654 Blast hits to 2654 proteins in 909 species: Archae - 247; Bacteria - 2042; Metazoa - 0; Fungi - 12; Plants - 34; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink). & (reliability: 508.0) & (original description: no original description) 0.7860861798497706 84 evm.model.tig00021366.19 no hits & (original description: no original description) 0.7853809263605317 79 evm.model.tig00020904.103 no hits & (original description: no original description) 0.7849705011731958 79 evm.model.tig00021435.52 no hits & (original description: no original description) 0.7843786748629054 94 evm.model.tig00000733.12 no hits & (original description: no original description) 0.7841435794295163 81 evm.model.tig00001416.8 (at3g48870 : 359.0) Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import.; HSP93-III; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: mitochondrion, chloroplast, chloroplast stroma, Tic complex; EXPRESSED IN: guard cell; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1). & (p35100|clpc_pea : 349.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 718.0) & (original description: no original description) 0.7831563421116761 85 evm.model.tig00020684.27 no hits & (original description: no original description) 0.7816248216934162 85 evm.model.tig00000383.60 (at1g10760 : 187.0) Encodes an &#945;-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.; STARCH EXCESS 1 (SEX1); FUNCTIONS IN: protein binding, alpha-glucan, water dikinase activity; INVOLVED IN: cold acclimation, response to symbiotic fungus, response to trehalose stimulus, circadian rhythm, starch catabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192); BEST Arabidopsis thaliana protein match is: phosphoglucan, water dikinase (TAIR:AT4G24450.1); Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196; Bacteria - 1989; Metazoa - 24; Fungi - 8; Plants - 221; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). & (q9awa5|gwd1_soltu : 177.0) Alpha-glucan water dikinase, chloroplast precursor (EC 2.7.9.4) (EC 2.7.13.3) (Starch-related R1 protein) - Solanum tuberosum (Potato) & (reliability: 374.0) & (original description: no original description) 0.7787978912161243 86 evm.model.tig00020934.47 (q6ty83|apx3_orysa : 160.0) Probable L-ascorbate peroxidase 3 (EC 1.11.1.11) (OsAPx03) - Oryza sativa (Rice) & (at4g35000 : 149.0) Encodes a microsomal ascorbate peroxidase APX3. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The APX3 protein interacts with AKR2 (ankyrin-containing protein that interacts with AFT1) and AFT1, a 14-3-3 protein.; ascorbate peroxidase 3 (APX3); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 5 (TAIR:AT4G35970.1); Has 9863 Blast hits to 8656 proteins in 1251 species: Archae - 86; Bacteria - 3261; Metazoa - 20; Fungi - 794; Plants - 3685; Viruses - 0; Other Eukaryotes - 2017 (source: NCBI BLink). & (reliability: 298.0) & (original description: no original description) 0.778268080550236 87 evm.model.tig00000670.26 (at1g54080 : 83.6) oligouridylate-binding protein 1A (UBP1A); FUNCTIONS IN: mRNA 3'-UTR binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 22193 Blast hits to 15481 proteins in 722 species: Archae - 0; Bacteria - 1057; Metazoa - 11734; Fungi - 2918; Plants - 4318; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.7780025937329971 88 evm.model.tig00021582.14 no hits & (original description: no original description) 0.7778846801189223 89 evm.model.tig00021531.10 no hits & (original description: no original description) 0.777545282051458 90 evm.model.tig00000402.51 no hits & (original description: no original description) 0.7766838008499164 91 evm.model.tig00001408.6 no hits & (original description: no original description) 0.776420783863899 92 evm.model.tig00000217.49 no hits & (original description: no original description) 0.7740748465632935 93 evm.model.tig00021137.20 (at1g66340 : 141.0) Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.; ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink). & (o49230|etr1_braol : 141.0) Ethylene receptor (EC 2.7.13.3) - Brassica oleracea (Wild cabbage) & (reliability: 282.0) & (original description: no original description) 0.7683732042731956 96 evm.model.tig00000317.18 no hits & (original description: no original description) 0.7677421122391999 97 evm.model.tig00000204.106 no hits & (original description: no original description) 0.7634316382675744 100