Species
Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
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Help
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Co-expression neighborhood: Bradi1g32970 (Brachypodium release)

Nodes show
No Feature
Clade
Depth
Family(default)
Label Co-occ.

Default

Clade

Family

Label Co-occ.

Edge Color
No Feature (default)
Depth
PCC
HRR
Edge Width
Default
Depth
HRR Filter
Cutoff: 100

Layout
Breadthfirst
Circle
Concentric
Cose
Grid
Random

Export
Data
Image

Export Data

(compatible with Cytoscape)

Other formats, compatible with Cytoscape.js

(network only)

(network + colors/shapes)

Export Image

Custom Heatmap <tr> <td class="col-md-3"><strong>Image</strong></td> <td class="col-md-9"><button class="btn btn-default" id="cy-download-svg">SVG</button> <button class="btn btn-default" id="cy-download-img-lowres">PNG</button></td> </tr> <tr><td><br></td></tr> <tr> <td class="col-md-3"><strong>Legend</strong></td> <td class="col-md-9"><button class="btn btn-default" id="cy-download-svg-legend">SVG</button> <button class="btn btn-default" id="cy-download-png-legend">PNG</button></td> </tr> <tr><td><br></td></tr> </tbody> </table> </div> <div class="modal-footer"> <button type="button" class="btn btn-default" data-dismiss="modal">Close</button> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); }, function(xhr, status, error) { // Upon failure... set the tooltip content to error api.set('content.text', status + ': ' + error); }); return 'Loading...'; // Set some initial text } }, show: { effect: function() { $(this).fadeTo(500, 1); } }, hide: { effect: function() { $(this).fadeTo(500, 0); } }, position: { viewport: $(window) }, style: 'qtip-bootstrap' }); }); } $(function () { init_qtip(); $("#leafy_loader").html(get_loader_svg('loader_leafy')); init_planet_loader('loader_leafy'); $('[data-toggle="popover"]').popover({container: 'body'}); $('a[data-target=#helpModal], abbr[data-target=#helpModal]').click(function(ev) { ev.preventDefault(); var target = $(this).attr("href"); // load the url and show modal on success $("#helpModal .modal-content").load(target, function() { $("#helpModal").modal("show"); }); }); }); </script> <script src="/static/js/planet_pagination.js"></script> <script src="/static/js/planet_ajax_table.js"></script> <script type="text/javascript"> var csrf_token = "IjMyZjBlMjk2MDRlZTRmMTg0NzNhNzVhMzgxNTNjYWIyMDY2MmQwYjki.Gh-u8A.I1LucS5qWzCbbeaoKD9sFOpAE_c"; $.ajaxSetup({ beforeSend: function(xhr, settings) { if (!/^(GET|HEAD|OPTIONS|TRACE)$/i.test(settings.type) && !this.crossDomain) { xhr.setRequestHeader("X-CSRFToken", csrf_token); } } }); </script> <script src="/static/js/bootstrap-slider.min.js"></script> <script> $( document ).ready(function() { $('#footer').hide(2000); $('[data-toggle="tooltip"]').tooltip(); $('#cy-edge-score').slider({ formatter: function(value) { return 'Cut-off: ' + value; } }); $('#cy-edge-score').on("slide", function(slideEvt) { $("#cy-edge-score-value").text(slideEvt.value); }); }); </script> <script src="/static/js/pablo.min.js"></script> <script src="/static/js/planet_svg_legend.js"></script> <script src="/static/js/XMLWriter-1.0.0-min.js"></script> <script src="/static/js/planet_xgmml.js"></script> <script src="/static/js/planet_svg.js"></script> <script src="/static/js/cytoscape.min.js"></script> <script src="/static/js/cytoscape-qtip.js"></script> <script src="/static/js/planet_graph.js"></script> <script> $(document).ready(function () { init_planet_loader(''); }); </script> </body> </html>

Image with Legend

Other Options