Expression profile for MA_10426077g0010 (MA_10426077g0010)

Description : (at5g14170 : 561.0) CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.; CHC1; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT3G01890.1); Has 1254 Blast hits to 1169 proteins in 258 species: Archae - 0; Bacteria - 112; Metazoa - 460; Fungi - 424; Plants - 177; Viruses - 4; Other Eukaryotes - 77 (source: NCBI BLink). & (reliability: 1122.0) & (original description: no original description)

Condition specificity: 1 h after dark (SPM: 0.35, entropy: 2.46, tau: 0.19)
Tissue specificity: Night (SPM: 0.47, entropy: 2.25, tau: 0.15)
ZT time: ZT16-19 (SPM: 0.46, entropy: 1.79, tau: 0.15)

All conditions


Tissue specificity

Note: SPM calculations for this profile are done using the maximum value.


ZT time

Note: SPM calculations for this profile are done using the maximum value.