Expression profile for evm.model.contig_543.1 (evm.model.contig_543.1)

Description : (gnl|cdd|68872 : 305.0) no description available & (at1g63210 : 129.0) Transcription elongation factor Spt6; FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: sperm cell, flower, cultured cell; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), SH2 motif (InterPro:IPR000980), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: global transcription factor group B1 (TAIR:AT1G65440.2); Has 3998 Blast hits to 3944 proteins in 1964 species: Archae - 20; Bacteria - 3376; Metazoa - 203; Fungi - 157; Plants - 65; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). & (gnl|cdd|37260 : 93.6) no description available & (reliability: 258.0) & (original description: no original description)

Condition specificity: 1 h after dark (SPM: 0.36, entropy: 2.63, tau: 0.22)
Tissue specificity: Dusk (SPM: 0.48, entropy: 2.25, tau: 0.19)
ZT time: ZT12-15 (SPM: 0.49, entropy: 1.92, tau: 0.2)

All conditions


Tissue specificity

Note: SPM calculations for this profile are done using the maximum value.


ZT time

Note: SPM calculations for this profile are done using the maximum value.