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  5. Mp1g07840.1

Mp1g07840.1


Description : component ARRS1 of ARPF2-ARRS1 complex


Gene families : OG_42_0006086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp1g07840.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Bradi2g37930 No alias ribosome biogenesis regulatory protein (RRS1) family protein 0.03 Orthogroups_2024-Update
Brara.D02321.1 No alias component *(ARRS1) of ARPF2-ARRS1 complex 0.04 Orthogroups_2024-Update
Cre01.g020950 No alias ribosome biogenesis regulatory protein (RRS1) family protein 0.05 Orthogroups_2024-Update
Seita.3G008500.1 No alias component *(ARRS1) of ARPF2-ARRS1 complex 0.05 Orthogroups_2024-Update
Sobic.003G043100.1 No alias component *(ARRS1) of ARPF2-ARRS1 complex 0.02 Orthogroups_2024-Update
Solyc12g006550 No alias Ribosome biogenesis regulatory protein homolog (AHRD... 0.03 Orthogroups_2024-Update
Sopen12g002500 No alias Ribosome biogenesis regulatory protein (RRS1) 0.02 Orthogroups_2024-Update
evm.model.contig_454.15 No alias (at2g37990 : 92.4) ribosome biogenesis regulatory... 0.02 Orthogroups_2024-Update
evm.model.tig00000215.62 No alias (at2g37990 : 164.0) ribosome biogenesis regulatory... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA 16Dec
BP GO:0042254 ribosome biogenesis IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Predicted GO
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0098519 nucleotide phosphatase activity, acting on free nucleotides IEP Predicted GO
InterPro domains Description Start Stop
IPR007023 Ribosom_reg 26 179
No external refs found!