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  5. Mp1g12380.1

Mp1g12380.1


Description : protein factor PRPF8/SUS2 of U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG_42_0004183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp1g12380.1
Cluster HCAA Clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
At1g80070 No alias SUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7] 0.02 Orthogroups_2024-Update
Bradi1g48264 No alias Pre-mRNA-processing-splicing factor 0.03 Orthogroups_2024-Update
Brara.A01074.1 No alias protein factor *(PRPF8/SUS2) of MAC... 0.02 Orthogroups_2024-Update
Cre01.g016050 No alias Pre-mRNA-processing-splicing factor 0.03 Orthogroups_2024-Update
GRMZM2G099355 No alias Pre-mRNA-processing-splicing factor 0.02 Orthogroups_2024-Update
Kfl00461_0140 kfl00461_0140_v1.1 (at1g80070 : 4182.0) a genetic locus involved in... 0.02 Orthogroups_2024-Update
Pp1s438_24V6 No alias pre-mrna processing factor 8 0.03 Orthogroups_2024-Update
Seita.4G060000.1 No alias protein factor *(PRPF8/SUS2) of MAC... 0.03 Orthogroups_2024-Update
Sopen07g004810 No alias PROCN (NUC071) domain 0.02 Orthogroups_2024-Update
evm.model.tig00000093.137 No alias (at1g80070 : 3340.0) a genetic locus involved in... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
MF GO:0017070 U6 snRNA binding IEA 16Dec
MF GO:0030623 U5 snRNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007051 spindle organization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0051225 spindle assembly IEP Predicted GO
CC GO:0070652 HAUS complex IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR012592 PROCN 416 821
IPR012984 PROCT 2232 2352
IPR019582 RRM_spliceosomal_PrP8 1006 1096
IPR021983 PRP8_domainIV 1780 2009
IPR000555 JAMM/MPN+_dom 2121 2219
IPR012591 PRO8NT 75 226
IPR019581 Prp8_U5-snRNA-bd 1230 1363
IPR019580 Prp8_U6-snRNA-bd 1462 1620
No external refs found!