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  5. Mp1g17010.1

Mp1g17010.1


Description : chromatin remodeling factor (Snf2)


Gene families : OG_42_0007138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp1g17010.1
Cluster HCAA Clusters: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
At2g46020 No alias ATP-dependent helicase BRM... 0.04 Orthogroups_2024-Update
Bradi3g01297 No alias transcription regulatory protein SNF2, putative 0.03 Orthogroups_2024-Update
Glyma.07G069400 No alias transcription regulatory protein SNF2, putative 0.02 Orthogroups_2024-Update
Glyma.09G257900 No alias transcription regulatory protein SNF2, putative 0.05 Orthogroups_2024-Update
Glyma.16G035100 No alias transcription regulatory protein SNF2, putative 0.03 Orthogroups_2024-Update
Glyma.18G234700 No alias transcription regulatory protein SNF2, putative 0.03 Orthogroups_2024-Update
HORVU6Hr1G006050.1 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Kfl00148_0270 kfl00148_0270_v1.1 (at2g46020 : 1119.0) Encodes a SWI/SNF chromatin... 0.02 Orthogroups_2024-Update
LOC_Os02g02290 No alias SNF2 family N-terminal domain containing protein, expressed 0.03 Orthogroups_2024-Update
PSME_00012052-RA No alias (at2g46020 : 1579.0) Encodes a SWI/SNF chromatin... 0.02 Orthogroups_2024-Update
Potri.014G086500 No alias transcription regulatory protein SNF2, putative 0.02 Orthogroups_2024-Update
Seita.2G227500.1 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Seita.2G227600.1 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
Sobic.004G009600.1 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
Sopen01g038570 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001487 Bromodomain 2239 2300
IPR000330 SNF2_N 1217 1515
IPR001650 Helicase_C 1535 1647
No external refs found!