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  5. At5g04460

At5g04460


Description : RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]


Gene families : OG_42_0001919 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001919_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g04460
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Glyma.11G191900 No alias Ring/U-Box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G082400 No alias Ring/U-Box superfamily protein 0.06 Orthogroups_2024-Update
Glyma.12G179300 No alias Ring/U-Box superfamily protein 0.04 Orthogroups_2024-Update
HORVU6Hr1G092920.1 No alias E3 ubiquitin ligase *(STUBL5) 0.03 Orthogroups_2024-Update
Potri.010G231100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G372400.1 No alias E3 ubiquitin ligase *(STUBL5) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!