Description : Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana (sp|o04647|pp399_arath : 530.0)
Gene families : OG_42_0008933 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008933_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Marchantia polymorpha: Mp1g22180.1 | |
Cluster | HCAA Clusters: Cluster_103 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
110655 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Pp1s98_10V6 | No alias | pentatricopeptide repeat-containing | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR033443 | PPR_long | 529 | 679 |
IPR002885 | Pentatricopeptide_repeat | 477 | 523 |
IPR002885 | Pentatricopeptide_repeat | 408 | 456 |
IPR002885 | Pentatricopeptide_repeat | 964 | 1009 |
IPR002885 | Pentatricopeptide_repeat | 858 | 904 |
IPR002885 | Pentatricopeptide_repeat | 787 | 835 |
IPR002885 | Pentatricopeptide_repeat | 267 | 315 |
IPR002885 | Pentatricopeptide_repeat | 759 | 779 |
IPR002885 | Pentatricopeptide_repeat | 1037 | 1062 |
IPR002885 | Pentatricopeptide_repeat | 1107 | 1135 |
IPR002885 | Pentatricopeptide_repeat | 376 | 400 |
IPR002885 | Pentatricopeptide_repeat | 931 | 960 |
No external refs found! |