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  5. Mp1g22180.1

Mp1g22180.1


Description : Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana (sp|o04647|pp399_arath : 530.0)


Gene families : OG_42_0008933 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008933_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp1g22180.1
Cluster HCAA Clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
110655 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s98_10V6 No alias pentatricopeptide repeat-containing 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR033443 PPR_long 529 679
IPR002885 Pentatricopeptide_repeat 477 523
IPR002885 Pentatricopeptide_repeat 408 456
IPR002885 Pentatricopeptide_repeat 964 1009
IPR002885 Pentatricopeptide_repeat 858 904
IPR002885 Pentatricopeptide_repeat 787 835
IPR002885 Pentatricopeptide_repeat 267 315
IPR002885 Pentatricopeptide_repeat 759 779
IPR002885 Pentatricopeptide_repeat 1037 1062
IPR002885 Pentatricopeptide_repeat 1107 1135
IPR002885 Pentatricopeptide_repeat 376 400
IPR002885 Pentatricopeptide_repeat 931 960
No external refs found!