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  5. Mp2g00410.1

Mp2g00410.1


Description : pre-mRNA-processing protein (PRP40A/B)


Gene families : OG_42_0002795 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002795_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp2g00410.1
Cluster HCAA Clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Bradi4g20404 No alias pre-mRNA-processing protein 40A 0.06 Orthogroups_2024-Update
Cre07.g351000 No alias pre-mRNA-processing protein 40A 0.02 Orthogroups_2024-Update
Glyma.10G255700 No alias pre-mRNA-processing protein 40B 0.02 Orthogroups_2024-Update
Glyma.14G089078 No alias pre-mRNA-processing protein 40A 0.03 Orthogroups_2024-Update
Glyma.20G135800 No alias pre-mRNA-processing protein 40B 0.04 Orthogroups_2024-Update
Kfl00663_0010 kfl00663_0010_v1.1 (at1g44910 : 268.0) Binds the carboxyl-terminal domain... 0.02 Orthogroups_2024-Update
MA_10433850g0010 No alias (at1g44910 : 302.0) Binds the carboxyl-terminal domain... 0.02 Orthogroups_2024-Update
Pp1s174_92V6 No alias protein binding 0.03 Orthogroups_2024-Update
Seita.2G179200.1 No alias pre-mRNA-processing protein *(PRP40A/B) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002713 FF_domain 662 710
IPR002713 FF_domain 735 791
IPR002713 FF_domain 593 643
IPR002713 FF_domain 871 918
IPR002713 FF_domain 526 575
IPR001202 WW_dom 295 323
IPR001202 WW_dom 339 364
No external refs found!