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  5. Mp2g08690.1

Mp2g08690.1


Description : component RPL13a of LSU proteome component


Gene families : OG_42_0002020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp2g08690.1
Cluster HCAA Clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
166650 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
A4A49_55645 No alias 60s ribosomal protein l13a-4 0.07 Orthogroups_2024-Update
Bradi1g08260 No alias Ribosomal protein L13 family protein 0.09 Orthogroups_2024-Update
Bradi1g59280 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
Brara.B03455.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Brara.C03976.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.F02982.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.G00660.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.I00372.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.I01172.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Cre12.g532550 No alias Ribosomal protein L13 family protein 0.05 Orthogroups_2024-Update
Glyma.08G353900 No alias Ribosomal protein L13 family protein 0.03 Orthogroups_2024-Update
Glyma.08G354000 No alias Ribosomal protein L13 family protein 0.07 Orthogroups_2024-Update
Glyma.09G024000 No alias Ribosomal protein L13 family protein 0.09 Orthogroups_2024-Update
HORVU5Hr1G096060.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Kfl00360_0020 kfl00360_0020_v1.1 (at3g07110 : 303.0) Ribosomal protein L13 family... 0.03 Orthogroups_2024-Update
LOC_Os07g01870 No alias ribosomal protein L13, putative, expressed 0.02 Orthogroups_2024-Update
MA_186340g0010 No alias (at3g24830 : 331.0) Ribosomal protein L13 family... 0.07 Orthogroups_2024-Update
PSME_00002229-RA No alias (at3g24830 : 323.0) Ribosomal protein L13 family... 0.02 Orthogroups_2024-Update
Potri.002G242600 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
Pp1s165_40V6 No alias 60s ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s174_48V6 No alias 60s ribosomal protein 0.14 Orthogroups_2024-Update
Pp1s63_162V6 No alias 60s ribosomal protein 0.08 Orthogroups_2024-Update
Pp1s75_223V6 No alias 60s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s80_110V6 No alias 60s ribosomal protein 0.11 Orthogroups_2024-Update
Seita.9G087700.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.001G085400.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Sobic.009G022400.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Solyc05g053670 No alias 60S ribosomal protein L13a-like protein (AHRD V3.3 ***... 0.06 Orthogroups_2024-Update
Solyc09g091740 No alias 60S ribosomal protein L13a-like protein (AHRD V3.3 ***... 0.06 Orthogroups_2024-Update
Solyc12g098330 No alias 60S ribosomal protein L13a-like protein (AHRD V3.3 ***... 0.09 Orthogroups_2024-Update
Sopen05g032170 No alias Ribosomal protein L13 0.12 Orthogroups_2024-Update
Sopen09g034630 No alias Ribosomal protein L13 0.12 Orthogroups_2024-Update
Sopen12g033110 No alias Ribosomal protein L13 0.04 Orthogroups_2024-Update
evm.model.contig_3478.11 No alias (at3g24830 : 235.0) Ribosomal protein L13 family... 0.08 Orthogroups_2024-Update
evm.model.tig00000792.29 No alias (at3g24830 : 242.0) Ribosomal protein L13 family... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 12 120
No external refs found!