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  5. Mp2g13680.1

Mp2g13680.1


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana (sp|q38953|deah5_arath : 1533.0)


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp2g13680.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
A4A49_00699 No alias pre-mrna-splicing factor atp-dependent rna helicase deah7 0.02 Orthogroups_2024-Update
At1g32490 No alias ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5] 0.02 Orthogroups_2024-Update
At2g35340 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
At2g47250 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Orthogroups_2024-Update
At3g26560 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Orthogroups_2024-Update
At4g18465 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Orthogroups_2024-Update
Bradi1g18830 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Bradi1g64190 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Bradi3g13460 No alias ATP-dependent RNA helicase, putative 0.04 Orthogroups_2024-Update
Bradi4g19990 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Brara.B00468.1 No alias RNA helicase *(Prp16) 0.02 Orthogroups_2024-Update
Cre03.g182950 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
GRMZM2G480809 No alias RNA helicase family protein 0.05 Orthogroups_2024-Update
Glyma.01G060700 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.01G142700 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.02G119000 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.06G201700 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.13G342400 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.14G217400 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.15G031900 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.17G256200 No alias ATP-dependent RNA helicase, putative 0.02 Orthogroups_2024-Update
Glyma.19G218200 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G007860.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00085_0100 kfl00085_0100_v1.1 (at1g32490 : 1214.0) Encodes a homolog of the yeast PRP2... 0.02 Orthogroups_2024-Update
LOC_Os02g50370 No alias helicase domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g20554 No alias ATP-dependent RNA helicase, putative, expressed 0.01 Orthogroups_2024-Update
MA_10435486g0020 No alias (at3g26560 : 411.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
MA_8723931g0010 No alias (at5g13010 : 928.0) embryo defective 3011 (EMB3011);... 0.02 Orthogroups_2024-Update
PSME_00004225-RA No alias (at3g62310 : 1190.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
PSME_00016394-RA No alias (at3g26560 : 1512.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
PSME_00019512-RA No alias (at3g62310 : 1077.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
Potri.012G034200 No alias ATP-dependent RNA helicase, putative 0.03 Orthogroups_2024-Update
Seita.1G136100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G313400.1 No alias RNA helicase *(Prp16) 0.02 Orthogroups_2024-Update
Sobic.004G174200.1 No alias RNA helicase *(Prp2) 0.04 Orthogroups_2024-Update
Solyc05g015040 No alias RNA helicase DEAH-box 15 0.02 Orthogroups_2024-Update
Sopen01g053030 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.03 Orthogroups_2024-Update
evm.model.tig00000842.2 No alias (at3g26560 : 568.0) ATP-dependent RNA helicase,... 0.01 Orthogroups_2024-Update
evm.model.tig00000984.27 No alias (at1g32490 : 711.0) Encodes a homolog of the yeast PRP2... 0.02 Orthogroups_2024-Update
evm.model.tig00021589.29 No alias (at3g26560 : 868.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0004386 helicase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0007155 cell adhesion IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009891 positive regulation of biosynthetic process IEP Predicted GO
BP GO:0009893 positive regulation of metabolic process IEP Predicted GO
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010628 positive regulation of gene expression IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0022610 biological adhesion IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031325 positive regulation of cellular metabolic process IEP Predicted GO
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Predicted GO
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predicted GO
BP GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0034243 regulation of transcription elongation from RNA polymerase II promoter IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051254 positive regulation of RNA metabolic process IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 1166 1241
IPR003029 S1_domain 328 386
IPR007502 Helicase-assoc_dom 1020 1108
IPR001650 Helicase_C 828 958
No external refs found!