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  5. Mp3g02150.1

Mp3g02150.1


Description : DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana (sp|f4iny4|hvt1_arath : 1025.0)


Gene families : OG_42_0007946 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007946_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp3g02150.1
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
At2g30800 No alias DExH-box ATP-dependent RNA helicase DExH6... 0.03 Orthogroups_2024-Update
Bradi2g51017 No alias helicase in vascular tissue and tapetum 0.03 Orthogroups_2024-Update
PSME_00034853-RA No alias (at2g30800 : 852.0) Has RNA or DNA helicase activity and... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0004386 helicase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 451 528
IPR001374 R3H_dom 43 100
IPR007502 Helicase-assoc_dom 765 856
IPR001650 Helicase_C 578 700
IPR011709 DUF1605 927 1017
No external refs found!